Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006660.1 Hibiscus syriacus cultivar Beakdansim tig00016481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68636
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:245 original size:14 final size:15
Alignment explanation
Indices: 220--248 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
210 TCTAAAGTTC
220 TCTTCTCTTCTTCAT
1 TCTTCTCTTCTTCAT
235 TCTTC-CTTCTTCAT
1 TCTTCTCTTCTTCAT
249 ACGTGAAGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.34, G:0.00, T:0.59
Consensus pattern (15 bp):
TCTTCTCTTCTTCAT
Found at i:25780 original size:78 final size:78
Alignment explanation
Indices: 25620--25780 Score: 209
Period size: 78 Copynumber: 2.1 Consensus size: 78
25610 TAGATTCAAT
* * * * * *
25620 TATTTTATTATTAAAAATGTTAAGATTTCATATTGCAACCTGCTTTCTTAATGAACTATGATATT
1 TATTTTATTAATAAAAATATTAACATTACAAATTGCAACCTGATTTCTTAATGAACTATGATATT
* *
25685 CTTGGATGCAACC
66 ATTGGATGAAACC
*
25698 TATTTTATTAATAAAAATATTAACATTACAAATTGCAACCT-ATTTCTTAGTGAACTATGATATT
1 TATTTTATTAATAAAAATATTAACATTACAAATTGCAACCTGATTTCTTAATGAACTATGATATT
25762 ATT-GAGTGAAACC
66 ATTGGA-TGAAACC
25775 ATATTT
1 -TATTT
25781 CTTATATATA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
76 2 0.03
77 29 0.40
78 41 0.57
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (78 bp):
TATTTTATTAATAAAAATATTAACATTACAAATTGCAACCTGATTTCTTAATGAACTATGATATT
ATTGGATGAAACC
Found at i:26112 original size:19 final size:19
Alignment explanation
Indices: 26088--26126 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26078 AAACCTCCCA
26088 ATAAGATCTATAAATAGAT
1 ATAAGATCTATAAATAGAT
26107 ATAAGATCTATAAATAGAT
1 ATAAGATCTATAAATAGAT
26126 A
1 A
26127 CAGTTTACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (19 bp):
ATAAGATCTATAAATAGAT
Found at i:34251 original size:32 final size:31
Alignment explanation
Indices: 34210--34288 Score: 126
Period size: 32 Copynumber: 2.6 Consensus size: 31
34200 CAGGGGTGAG
*
34210 ATTGGTCGCCATGCAGTCGGGGCGAAGCAGGT
1 ATTGGTCGCCATGCAGTCGGGGCGAAG-AAGT
34242 ATTGGTCGCCATGCAGTCGGGGCGAAGAAGT
1 ATTGGTCGCCATGCAGTCGGGGCGAAGAAGT
34273 A--GGTCGCCATGCAGTC
1 ATTGGTCGCCATGCAGTC
34289 TGTTGAAGGT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
29 15 0.33
31 4 0.09
32 27 0.59
ACGTcount: A:0.20, C:0.23, G:0.38, T:0.19
Consensus pattern (31 bp):
ATTGGTCGCCATGCAGTCGGGGCGAAGAAGT
Found at i:34939 original size:16 final size:15
Alignment explanation
Indices: 34918--34958 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
34908 AATTTAAGGC
34918 AAATAAGATAAAAATA
1 AAATAA-ATAAAAATA
34934 AAATAAATAAAAATA
1 AAATAAATAAAAATA
34949 ATAATAAATA
1 A-AATAAATA
34959 TACTAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (15 bp):
AAATAAATAAAAATA
Found at i:34969 original size:12 final size:12
Alignment explanation
Indices: 34925--34971 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
34915 GGCAAATAAG
*
34925 ATAA-AAATAAA
1 ATAATAAATATA
*
34936 ATAAATAAAAATA
1 AT-AATAAATATA
34949 ATAATAAATATA
1 ATAATAAATATA
*
34961 CTAATAAATAT
1 ATAATAAATAT
34972 GACATAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 2 0.07
12 21 0.70
13 7 0.23
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAATAAATATA
Found at i:34982 original size:16 final size:15
Alignment explanation
Indices: 34931--34984 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 15
34921 TAAGATAAAA
* *
34931 ATAAAATAAATAAAA
1 ATAAAATAAATATAC
34946 ATAATAATAAATATAC
1 ATAA-AATAAATATAC
34962 -T--AATAAATATGAC
1 ATAAAATAAATAT-AC
34975 ATAAAATAAA
1 ATAAAATAAA
34985 AAACAACATG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
12 9 0.28
13 2 0.06
14 1 0.03
15 5 0.16
16 15 0.47
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (15 bp):
ATAAAATAAATATAC
Found at i:36690 original size:36 final size:36
Alignment explanation
Indices: 36467--36840 Score: 262
Period size: 36 Copynumber: 10.4 Consensus size: 36
36457 AATATAATAT
* *
36467 AAACTATATAATATATATATATTTCAAAAAT-ATTTTTTA
1 AAACTATATATTATATATAT-TTTC-AAAATGA--TTTCA
* *
36506 AAAC--TATA-TAT-TATATTCT-AAAA-AATTTCCA
1 AAACTATATATTATATATATTTTCAAAATGATTT-CA
*
36537 AAACTATATATTATATA-GTTTTCAAAATGATTT-A
1 AAACTATATATTATATATATTTTCAAAATGATTTCA
* * * *
36571 AAAATAT-TA-TATA-AGA-TTTCAAAATATGTTTTTA
1 AAACTATATATTATATATATTTTC-AAA-ATGATTTCA
* *
36605 AAACTATATATTATATA-ATTTTTCAAAAATGTTTTTTAA
1 AAACTATATATTATATATA-TTTTC-AAAATG--ATTTCA
36644 AAACTATATATTATATATATTTTCAAAATGATTTCA
1 AAACTATATATTATATATATTTTCAAAATGATTTCA
36680 AAACTATATATTATATATATTTTC-AAATGCATTTTCAA
1 AAACTATATATTATATATATTTTCAAAATG-A-TTTC-A
* * ** *
36718 AAACTATACATTATATATGTTTTCAAAATTTTTTAA
1 AAACTATATATTATATATATTTTCAAAATGATTTCA
* * *
36754 AAACTATATACTATATATATTTTCGAAAT-ATTTTCG
1 AAACTATATATTATATATATTTTCAAAATGA-TTTCA
* * **
36790 AAACTATATAGTACATATATTTT-AAAAACATTTTCA
1 AAACTATATATTATATATATTTTCAAAATGA-TTTCA
*
36826 AAAAT-TATATTATAT
1 AAACTATATATTATAT
36841 TGCTATAAAA
Statistics
Matches: 277, Mismatches: 32, Indels: 56
0.76 0.09 0.15
Matches are distributed among these distances:
30 3 0.01
31 10 0.04
32 12 0.04
33 12 0.04
34 22 0.08
35 29 0.10
36 101 0.36
37 15 0.05
38 37 0.13
39 35 0.13
40 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (36 bp):
AAACTATATATTATATATATTTTCAAAATGATTTCA
Found at i:36743 original size:74 final size:74
Alignment explanation
Indices: 36604--36840 Score: 261
Period size: 74 Copynumber: 3.2 Consensus size: 74
36594 ATATGTTTTT
* *
36604 AAAACTATATATTATATA-ATTTTTCAAAAATGTTTTTTAAAAACTATATATTATATATATTTTC
1 AAAACTATATATTATATATA-TTTTC-AAAATGATTTTCAAAAACTATATATTATATATATTTTC
36668 AAAATGATTTC
64 AAAATGATTTC
* *
36679 AAAACTATATATTATATATATTTTC-AAATGCATTTTCAAAAACTATACATTATATATGTTTTCA
1 AAAACTATATATTATATATATTTTCAAAATG-ATTTTCAAAAACTATATATTATATATATTTTCA
** *
36743 AAATTTTTTA
65 AAATGATTTC
* * * * *
36753 AAAACTATATACTATATATATTTTCGAAAT-ATTTTC-GAAACTATATAGTACATATATTTT-AA
1 AAAACTATATATTATATATATTTTCAAAATGATTTTCAAAAACTATATATTATATATATTTTCAA
**
36815 AAACATTTTC
66 AATGA-TTTC
*
36825 AAAAAT-TATATTATAT
1 AAAACTATATATTATAT
36841 TGCTATAAAA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
71 13 0.09
72 27 0.19
73 11 0.08
74 60 0.43
75 27 0.19
76 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (74 bp):
AAAACTATATATTATATATATTTTCAAAATGATTTTCAAAAACTATATATTATATATATTTTCAA
AATGATTTC
Found at i:37712 original size:165 final size:163
Alignment explanation
Indices: 37432--39059 Score: 1489
Period size: 165 Copynumber: 9.8 Consensus size: 163
37422 GAATATAATT
* * * * ** *
37432 GAACTCGGAGGTCTTCGGTTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTGAATGATGTGC
1 GAACTCGAAGGTCTTTGG-TCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGC
* * *
37497 CCTCCAAGCTGAGAGTAATTGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTAT
37562 ACTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTC
130 ACTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTC
*
37597 GAACTCCAAGGTCTTTTGGTCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGC
1 GAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGC
* *
37662 CCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTAT
37727 ACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTC
130 ACTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTC
*
37762 GAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGC
1 GAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGC
* *
37827 CCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTAT
37892 ACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTC
130 ACTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTC
* ** * * * * *
37927 GAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCTAG-ATTCAAGTTGTGCTGCAAATGATATG
1 GAACTCGAAGGTCTTTGG-TCACAGATAACCCTTCTAGCATT-GAGTTATGCTGTAAATGATGTG
* * * * * * * * *
37991 -CCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGA
64 CCCTCGAAGCTGAGAGTAATCGAACTCGAGGGTC-TTTGG---CAGATAACCCTTCTCGACTTAA
* ** * * * *
38055 GTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
125 GCTATACTGCAAATGATGTG-CCTTG-AGCTGAGCGTAGTC
* ** * * * * * *
38096 GAACTTGGGGGTCTTTGG---CAGATAGCCCTTCTCG-ACTTAAGCTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCA-TTGAGTTATGCTGTAAATGATGTGC
* * * * * * * *
38157 CGTTG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTC-TTTGG---CAGATAACCCTTCTCGACTTAAG
* * * * * *
38221 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGAGTAATC
126 CTATACTGCAAATGATGTG-CCTTG-AGCTGAGCGTAGTC
** * * * * * *
38261 GAACTCGGGGGTCTTTGG---CAGATAGCCCTTCTCG-ACTTAAGCTATACTGCAAATGATGTGC
1 GAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCA-TTGAGTTATGCTGTAAATGATGTGC
* * * * * * * *
38322 CGTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCTAGA-TTCAA
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTC--T--TTGGCAGATAACCCTTCTCGACTT-AA
* * * *
38385 GTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTC
125 GCTATACTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTC
* *
38425 GAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGC
1 GAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGC
* * *
38490 CCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTAT
*
38555 ACTGCAAATGATGTGTCGTTGAGCTGAGCGTAGTC
130 ACTGCAAATGATGTG-CCTTGAGCTGAGCGTAGTC
* *
38590 GAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGC
1 GAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGC
* * *
38655 CTTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTAT
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTAT
38720 ACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTC
130 ACTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTC
* ** * * * * *
38755 GAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCTAG-ATTCAAGTTGTGCTGCAAATGATATG
1 GAACTCGAAGGTCTTTGG-TCACAGATAACCCTTCTAGCATT-GAGTTATGCTGTAAATGATGTG
* * * * * * * * *
38819 -CCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGA
64 CCCTCGAAGCTGAGAGTAATCGAACTCGAGGGTC-TTTGG---CAGATAACCCTTCTCGACTTAA
* * * * * *
38883 GTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
125 GCTATACTGCAAATGATGTG-CCTTG-AGCTGAGCGTAGTC
** * * * * * * *
38924 GAACTCGGGGGTCTTTGGT---AGATAGCTCTTCTCG-ACTTAAGCTATACTGCAAATGATGTG-
1 GAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCA-TTGAGTTATGCTGTAAATGATGTGC
* * * * * * * * * *
38984 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTGGTGGCAGGTAGCCCTTCTGGCCTTGAGCT
65 CCTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTT--TGGCAGATAACCCTTCTCGACTTAAGCT
39049 A-AGCTGCAAAT
128 ATA-CTGCAAAT
39060 AGTTTGTTTA
Statistics
Matches: 1283, Mismatches: 142, Indels: 78
0.85 0.09 0.05
Matches are distributed among these distances:
163 29 0.02
164 95 0.07
165 937 0.73
166 24 0.02
167 1 0.00
168 118 0.09
169 79 0.06
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (163 bp):
GAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGCC
CTCGAAGCTGAGAGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATA
CTGCAAATGATGTGCCTTGAGCTGAGCGTAGTC
Found at i:37822 original size:249 final size:242
Alignment explanation
Indices: 37427--39059 Score: 1460
Period size: 249 Copynumber: 6.6 Consensus size: 242
37417 AAGTTGAATA
* * * * * * **
37427 TAATTGAACTCGGAGGTCTTCGGTTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTGAATGA
1 TAATCGAACTCGAAGGTCTT---TTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGA
** * * * * * *
37492 TGTGCCCTCCAAGCTGAGAGTAATTGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAA
63 TGTG-CCT-TGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTAA
*
37557 GCTATACTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCCAAGGTCTTTTGGTCACAG
126 GCTATACTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACAG
* * *
37622 ATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGAG
189 ATAACCCTTCTAG-ATTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
** * * *
37677 TAATCGAACTCGGGGGTC-TTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGT
1 TAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGT
* *
37741 GCCGTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGA
66 GCC-TTGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG---CAGATAACCCTTCTAGACTTAA
* * * * * * **
37806 GTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGG---CAG
126 GCTATACTGCAAATGATGTG-CCTTG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCACAG
* * * * * *
37868 ATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTG-AGCTGAGCG
189 ATAACCCTTCTAGA-TTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
* * * * *
37922 TAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCTAGA-TTCAAGTTGTGCTGCAAATG
1 TAATCGAACTCGAAGGTC-TT--TTGGCAGATAACCCTTCTAGACTT-AAGTTATACTGCAAATG
* * *
37986 ATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCC
62 ATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG---CAGATAACCCTTCTAGAC
* * ** * * * * * **
38051 TTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGG--
122 TTAAGCTATACTGCAAATGATGTG-CCTTG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTC
* * * * * *
38114 -CAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTG-AGCTGAGCG
185 ACAGATAACCCTTCTAGA-TTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
* * * * *
38171 TAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGA
1 TAATCGAACTCGAAGGTCTTTTGG---CAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGA
* * * ** * *
38236 TGTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAA
63 TGTG-CCTTG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTAA
* **
38301 GCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAG
126 GCTATACTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TCACAG
* * * * *
38366 ACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATG-CCTTGGAGCTGAGCG
189 ATAACCCTTCTAGATT-AAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
* * * * * *
38420 TAGTCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGA
1 TAATCGAACTCGAAGGTCTTTTGG---CAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGA
* * * ** * *
38485 TGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAA
63 TGTG-CCTTG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTAA
*
38550 GCTATACTGCAAATGATGTGTCGTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAG
126 GCTATACTGCAAATGATGTG-CCTTGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACAG
* * * * * *
38615 ATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCTTCGAAGCTGAGAG
189 ATAACCCTTCTAG-ATTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
** *
38670 TAATCGAACTCGGGGGTC-TTTGGCAGATAACCCTTCTCGACTTAAGTTATACTGCAAATGATGT
1 TAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGT
* *
38734 GCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCTAGA-TTCA
66 GCC-TTGAGCTGAGCGTAGTCGAACTCGAAGGTC--T--TTGGCAGATAACCCTTCTAGACTT-A
* * * * *
38798 AGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACA
125 AGCTATACTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACA
* * * *
38863 GATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
188 GATAACCCTTCTAG-ATTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
** * * * * *
38919 TAATCGAACTCGGGGGTC-TTTGGTAGATAGCTCTTCTCGACTTAAGCTATACTGCAAATGATGT
1 TAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGT
* * * * *
38983 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTGGTGGCAGGTAGCCCTTCTGGCCTTGAGC
66 GCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTT--TGGCAGATAACCCTTCTAGACTTAAGC
39048 TA-AGCTGCAAAT
128 TATA-CTGCAAAT
39060 AGTTTGTTTA
Statistics
Matches: 1192, Mismatches: 148, Indels: 89
0.83 0.10 0.06
Matches are distributed among these distances:
245 101 0.08
246 160 0.13
247 29 0.02
248 21 0.02
249 780 0.65
250 101 0.08
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (242 bp):
TAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGT
GCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTAAGCTAT
ACTGCAAATGATGTGCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCACAGATAACCC
TTCTAGATTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCG
Found at i:38108 original size:414 final size:414
Alignment explanation
Indices: 37563--39018 Score: 2761
Period size: 414 Copynumber: 3.5 Consensus size: 414
37553 TTAAGCTATA
* * * *
37563 CTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCCAAGGTCTTTTGGTCACAGATAACC
1 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
* *
37628 CTTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGG
66 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
37693 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGT
131 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGT
37758 AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
196 AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
37823 GTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAG
261 GTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAG
37888 CTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
326 CTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
37953 CAACCCTTCTAGATTCAAGTTGTG
391 CAACCCTTCTAGATTCAAGTTGTG
37977 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
1 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
* *
38042 CTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTTGGGGG
66 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
38107 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGT
131 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGT
38172 AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
196 AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
38237 GTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAG
261 GTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAG
38302 CTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
326 CTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
38367 CAACCCTTCTAGATTCAAGTTGTG
391 CAACCCTTCTAGATTCAAGTTGTG
38391 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
1 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
38456 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
66 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
*
38521 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGTCGTTGAGCTGAGCGT
131 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGT
*
38586 AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGAT
196 AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
* *
38651 GTGCCTTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAACCCTTCTCGACTTAAG
261 GTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAG
*
38716 TTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
326 CTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
38781 CAACCCTTCTAGATTCAAGTTGTG
391 CAACCCTTCTAGATTCAAGTTGTG
38805 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
1 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
38870 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
66 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
* *
38935 TCTTTGGTAGATAGCTCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGGAGCTGAGCG
131 TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGAGCG
38999 TAGTCGAACTCGAAGGTCTT
195 TAGTCGAACTCGAAGGTCTT
39019 GGTGGCAGGT
Statistics
Matches: 1023, Mismatches: 18, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
413 2 0.00
414 1021 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (414 bp):
CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACC
CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
TCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGT
AGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
GTGCCCTCGAAGCTGAGAGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAG
CTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGA
CAACCCTTCTAGATTCAAGTTGTG
Found at i:42099 original size:19 final size:19
Alignment explanation
Indices: 42075--42120 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
42065 AGTTAATGTG
42075 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
42094 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
42113 AATGCAAA
1 AATGCAAA
42121 ATGTCTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:44004 original size:49 final size:47
Alignment explanation
Indices: 43951--44070 Score: 111
Period size: 49 Copynumber: 2.4 Consensus size: 47
43941 AAGGAGAGAA
* *
43951 GAAAAAAATAAATAAAATAAA-AAGATAAATTGAAAAATGAATAAAAAAG
1 GAAAAAAATAAATAAAATAAACAAAATAAA--CAAAAAT-AATAAAAAAG
*
44000 GAAAACAATATTAAATAAAA-AAACAAAATAAACAAAAGTAATAAAAAAG
1 GAAAA-AA-A-TAAATAAAATAAACAAAATAAACAAAAATAATAAAAAAG
*
44049 GCAATAATAAT-AATAAAATAAA
1 G-AA-AAAAATAAATAAAATAAA
44071 TTTAAGGCAA
Statistics
Matches: 60, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
47 7 0.12
48 4 0.07
49 17 0.28
50 10 0.17
51 6 0.10
52 16 0.27
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.17
Consensus pattern (47 bp):
GAAAAAAATAAATAAAATAAACAAAATAAACAAAAATAATAAAAAAG
Found at i:44100 original size:16 final size:15
Alignment explanation
Indices: 44079--44119 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
44069 AATTTAAGGC
44079 AAATAAGATAAAAATA
1 AAATAA-ATAAAAATA
44095 AAATAAATAAAAATA
1 AAATAAATAAAAATA
44110 ATAATAAATA
1 A-AATAAATA
44120 TACTAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (15 bp):
AAATAAATAAAAATA
Found at i:44130 original size:12 final size:12
Alignment explanation
Indices: 44086--44132 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
44076 GGCAAATAAG
*
44086 ATAA-AAATAAA
1 ATAATAAATATA
*
44097 ATAAATAAAAATA
1 AT-AATAAATATA
44110 ATAATAAATATA
1 ATAATAAATATA
*
44122 CTAATAAATAT
1 ATAATAAATAT
44133 GACATAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 2 0.07
12 21 0.70
13 7 0.23
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAATAAATATA
Found at i:44143 original size:16 final size:15
Alignment explanation
Indices: 44092--44145 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 15
44082 TAAGATAAAA
* *
44092 ATAAAATAAATAAAA
1 ATAAAATAAATATAC
44107 ATAATAATAAATATAC
1 ATAA-AATAAATATAC
44123 -T--AATAAATATGAC
1 ATAAAATAAATAT-AC
44136 ATAAAATAAA
1 ATAAAATAAA
44146 AAACAACATG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
12 9 0.28
13 2 0.06
14 1 0.03
15 5 0.16
16 15 0.47
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (15 bp):
ATAAAATAAATATAC
Found at i:44197 original size:20 final size:21
Alignment explanation
Indices: 44161--44205 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
44151 ACATGAAGAG
44161 AAAAAAAAATTGAAAAATA-A
1 AAAAAAAAATTGAAAAATAGA
*
44181 AAAAAAAAA-TGTTAAAATAGA
1 AAAAAAAAATTG-AAAAATAGA
44202 AAAA
1 AAAA
44206 CTAAAAAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 2 0.09
20 15 0.68
21 5 0.23
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.16
Consensus pattern (21 bp):
AAAAAAAAATTGAAAAATAGA
Found at i:45619 original size:22 final size:22
Alignment explanation
Indices: 45594--45640 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
45584 AATGAAAATA
45594 ATAATAATAAC-ATACTAATA-AT
1 ATAAT-ATAACTATA-TAATATAT
45616 ATAATATAACTATATAATATAT
1 ATAATATAACTATATAATATAT
45638 ATA
1 ATA
45641 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (22 bp):
ATAATATAACTATATAATATAT
Found at i:45696 original size:31 final size:33
Alignment explanation
Indices: 45632--45705 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 33
45622 TAACTATATA
* **
45632 ATATA-TATATTTTAAAAATATTTTTTAAAACT
1 ATATATTATATTCTAAAAATATTTTCCAAAACT
45664 ATATATTATATTCTAAAAA-A-TTTCCAAAACT
1 ATATATTATATTCTAAAAATATTTTCCAAAACT
45695 ATATATTATAT
1 ATATATTATAT
45706 AGTTTTCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 20 0.53
32 6 0.16
33 12 0.32
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (33 bp):
ATATATTATATTCTAAAAATATTTTCCAAAACT
Found at i:45732 original size:31 final size:36
Alignment explanation
Indices: 45689--45924 Score: 156
Period size: 38 Copynumber: 6.5 Consensus size: 36
45679 AAAAATTTCC
45689 AAAACTATATATTATAT-AGTTTTCAAAAATG-ATTT
1 AAAAC-ATATATTATATAAGTTTTCAAAAATGTATTT
* *
45724 -AAA-A-ATATTATATAAGATTTCAAAATATGTTTTT
1 AAAACATATATTATATAAGTTTTCAAAA-ATGTATTT
* *
45758 AAAACTATATATTATATAATTTTTCAAAAATGTTTTTT
1 AAAAC-ATATATTATATAAGTTTTCAAAAATG-TATTT
45796 AAAAACTATATATTATATATA-TTTTC-AAAATG-ATTT
1 -AAAAC-ATATATTATATA-AGTTTTCAAAAATGTATTT
*
45832 CAAAACTATATATTATATATA-TTTTC--AAATGCATTTT
1 -AAAAC-ATATATTATATA-AGTTTTCAAAAATGTA-TTT
* * *
45869 CAAAAACTATACATTATATATGTTTTC-AAAAT-TTTTT
1 --AAAAC-ATATATTATATAAGTTTTCAAAAATGTATTT
*
45906 AAAAACTATATACTATATA
1 -AAAAC-ATATATTATATA
45925 TATTTTCGAA
Statistics
Matches: 173, Mismatches: 13, Indels: 29
0.80 0.06 0.13
Matches are distributed among these distances:
31 9 0.05
32 11 0.06
33 3 0.02
34 6 0.03
35 8 0.05
36 46 0.27
37 10 0.06
38 52 0.30
39 27 0.16
40 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (36 bp):
AAAACATATATTATATAAGTTTTCAAAAATGTATTT
Found at i:45897 original size:74 final size:74
Alignment explanation
Indices: 45623--45994 Score: 300
Period size: 74 Copynumber: 5.2 Consensus size: 74
45613 AATATAATAT
* * ** *
45623 AACTATATAATATATATATTTTAAAAAT-ATTTTTTAAAAC--TATA-TAT-TATATTCT-AAAA
1 AACTATATATTATATATATTTTCAAAATGATTTTCAAAAACTATATATTATATATATTTTCAAAA
*
45682 -AATTTCCAA
66 TGATTT-CAA
* *
45691 AACTATATATTATATA-GTTTTCAAAAATGA-TTT-AAAAA-TAT-TA-TATA-AGA-TTTCAAA
1 AACTATATATTATATATATTTTC-AAAATGATTTTCAAAAACTATATATTATATATATTTTC-AA
* *
45748 ATATGTTTTTAA
64 A-ATGATTTCAA
* *
45760 AACTATATATTATATA-ATTTTTCAAAAATGTTTTTTAAAAACTATATATTATATATATTTTCAA
1 AACTATATATTATATATA-TTTTC-AAAATGATTTTCAAAAACTATATATTATATATATTTTCAA
45824 AATGATTTCAA
64 AATGATTTCAA
* *
45835 AACTATATATTATATATATTTTC-AAATGCATTTTCAAAAACTATACATTATATATGTTTTCAAA
1 AACTATATATTATATATATTTTCAAAATG-ATTTTCAAAAACTATATATTATATATATTTTCAAA
** *
45899 ATTTTTTAAA
65 ATGATTTCAA
* * * * *
45909 AACTATATACTATATATATTTTCGAAAT-ATTTTC-GAAACTATATAGTACATATATTTT-AAAA
1 AACTATATATTATATATATTTTCAAAATGATTTTCAAAAACTATATATTATATATATTTTCAAAA
**
45971 ACATTTTCAA
66 TGA-TTTCAA
*
45981 AAAT-TATATTATAT
1 AACTATATATTATAT
45995 TGCTATAAAA
Statistics
Matches: 250, Mismatches: 33, Indels: 39
0.78 0.10 0.12
Matches are distributed among these distances:
66 2 0.01
67 15 0.06
68 27 0.11
69 20 0.08
70 15 0.06
71 16 0.06
72 32 0.13
73 14 0.06
74 62 0.25
75 37 0.15
76 6 0.02
77 4 0.02
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (74 bp):
AACTATATATTATATATATTTTCAAAATGATTTTCAAAAACTATATATTATATATATTTTCAAAA
TGATTTCAA
Found at i:45941 original size:38 final size:37
Alignment explanation
Indices: 45623--45966 Score: 251
Period size: 36 Copynumber: 9.6 Consensus size: 37
45613 AATATAATAT
* *
45623 AACTATATAATATATATATTTTAAAAATATTTTTT-AA
1 AACTATATATTATATATATTTT-CAAATATTTTTTAAA
* ** **
45660 AAC--TATA-TAT-TATATTCT-AAA-AAATTTCCAA
1 AACTATATATTATATATATTTTCAAATATTTTTTAAA
* * **
45691 AACTATATATTATATA-GTTTTCAAAAATGATTTAAA
1 AACTATATATTATATATATTTTCAAATATTTTTTAAA
*
45727 AA-TAT-TA-TATA-AGA-TTTCAAAATATGTTTTT-AA
1 AACTATATATTATATATATTTTC-AAATAT-TTTTTAAA
*
45760 AACTATATATTATATA-ATTTTTCAAAAATGTTTTTTAAA
1 AACTATATATTATATATA-TTTTC--AAATATTTTTTAAA
** *
45799 AACTATATATTATATATATTTTCAAA-ATGATTTCAA
1 AACTATATATTATATATATTTTCAAATATTTTTTAAA
*
45835 AACTATATATTATATATATTTTCAAATGCA-TTTTCAAA
1 AACTATATATTATATATATTTTCAAAT--ATTTTTTAAA
* *
45873 AACTATACATTATATATGTTTTCAAA-ATTTTTTAAA
1 AACTATATATTATATATATTTTCAAATATTTTTTAAA
* **
45909 AACTATATACTATATATATTTTCGAAATA--TTTTCGA
1 AACTATATATTATATATATTTTC-AAATATTTTTTAAA
* *
45945 AACTATATAGTACATATATTTT
1 AACTATATATTATATATATTTT
45967 AAAAACATTT
Statistics
Matches: 248, Mismatches: 34, Indels: 51
0.74 0.10 0.15
Matches are distributed among these distances:
30 4 0.02
31 8 0.03
32 5 0.02
33 24 0.10
34 17 0.07
35 15 0.06
36 96 0.39
37 10 0.04
38 38 0.15
39 30 0.12
40 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (37 bp):
AACTATATATTATATATATTTTCAAATATTTTTTAAA
Found at i:46110 original size:32 final size:31
Alignment explanation
Indices: 46069--46147 Score: 117
Period size: 32 Copynumber: 2.6 Consensus size: 31
46059 CAGGGGTGAG
* *
46069 ATTGGTCGCCATGCAGTCGGGGTGAAGCAGGT
1 ATTGGTCGCCATGCAGTCGGGGCGAAG-AAGT
46101 ATTGGTCGCCATGCAGTCGGGGCGAAGAAGT
1 ATTGGTCGCCATGCAGTCGGGGCGAAGAAGT
46132 A--GGTCGCCATGCAGTC
1 ATTGGTCGCCATGCAGTC
46148 TGTTGAAGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
29 15 0.33
31 4 0.09
32 26 0.58
ACGTcount: A:0.20, C:0.22, G:0.38, T:0.20
Consensus pattern (31 bp):
ATTGGTCGCCATGCAGTCGGGGCGAAGAAGT
Found at i:46407 original size:27 final size:29
Alignment explanation
Indices: 46351--46420 Score: 117
Period size: 27 Copynumber: 2.4 Consensus size: 29
46341 ATTTTAACCC
46351 ATTATATTAAAGTTGTGTGGTTGTAAGAGT
1 ATTATATTAAAG-TGTGTGGTTGTAAGAGT
46381 ATTATATTAAAGTG-G-GGTTGTAAGAGT
1 ATTATATTAAAGTGTGTGGTTGTAAGAGT
46408 ATTATATTAAAGT
1 ATTATATTAAAGT
46421 ATATAAATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 25 0.62
28 1 0.03
29 2 0.05
30 12 0.30
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.41
Consensus pattern (29 bp):
ATTATATTAAAGTGTGTGGTTGTAAGAGT
Found at i:46696 original size:13 final size:14
Alignment explanation
Indices: 46678--46709 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
46668 ATTTATAAAA
46678 AAAATAATATT-TT
1 AAAATAATATTATT
46691 AAAAT-ATATTATT
1 AAAATAATATTATT
46704 AAAATA
1 AAAATA
46710 CAATGTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATAATATTATT
Found at i:47312 original size:275 final size:279
Alignment explanation
Indices: 46740--47348 Score: 958
Period size: 275 Copynumber: 2.2 Consensus size: 279
46730 AAGTAACTAT
* * * *
46740 TGATTTTACGAACCCTAAACCCTAAAATATTTTGGTTGTTGCTGAAAACCTTTATAAATTCATGG
1 TGATTTTATGAACCTTAAACCCTAAAATATTTTAGTTGTTGCTGAAAACCTATATAAATTCATGG
*
46805 TATGTTGAGGGAAATGAAAGTGGTAGAGGATGGTGATATCTACCATGATGGTGGTTACAAATTTG
66 TATGTTGAGGGAAATGAAAGGGGTAGAGGATGGTGATATCTACCATGATGGTGGTTACAAATTTG
* * *
46870 TTTTTTATAAGAAGAAATTGTTTGGATGTAGAATTGTTAGGGTTCAGGGTTTAAAGTCTAGGGTT
131 TTTTTTATAAGAAGAAATTGATTGGAGGGAGAA---TTA-GGTTCAGGGTTTAAAGTCTAGGGTT
*
46935 TAGAGTTTTTAGCAATAACCAAAATATTTTAGGGTTTAGGGTTTATGGTTCACAAAATCAATAGT
192 TAGAGTTTTTAGCAATAACCAAAATATTTTAGGGTTTAGGGTTTATAGTTCACAAAATCAATAGT
*
47000 TACTTATATTATTTGTTGTATAT
257 TACTTATATTATTTGTTGTATAC
* *
47023 TGATTTTGTGAACCTTAAACCCTAAAATATTTTAGTTGTTGCTGAGAACCTATATAAATTCATGG
1 TGATTTTATGAACCTTAAACCCTAAAATATTTTAGTTGTTGCTGAAAACCTATATAAATTCATGG
*
47088 TATGTTGAGGGCAATGAAAGGGGTAGAGGATGGTGATATCTACCATGATGGTGGTTACAAATTTG
66 TATGTTGAGGGAAATGAAAGGGGTAGAGGATGGTGATATCTACCATGATGGTGGTTACAAATTTG
* *
47153 -TTTTTATAAGAAGAAATTGATTGGAGGGAGAA-T-GGTT-AGGGTTTAAAGTTTAGGGTTTAGG
131 TTTTTTATAAGAAGAAATTGATTGGAGGGAGAATTAGGTTCAGGGTTTAAAGTCTAGGGTTTAGA
*
47214 GTTTTTAGTAATAACCAAAATATTTTAGGGTTTAGGGTTTATAGTTCACAAAATCAATAGTTACT
196 GTTTTTAGCAATAACCAAAATATTTTAGGGTTTAGGGTTTATAGTTCACAAAATCAATAGTTACT
*
47279 TATATTATTTGTTGTGTAC
261 TATATTATTTGTTGTATAC
* **
47298 TGATTTTATGAACCTTAAACCCT-AAATATTTTTTGTTGTTATTGAAAACCT
1 TGATTTTATGAACCTTAAACCCTAAAATA-TTTTAGTTGTTGCTGAAAACCT
47349 TTATCTACCA
Statistics
Matches: 303, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
274 5 0.02
275 142 0.47
276 4 0.01
278 1 0.00
282 29 0.10
283 122 0.40
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (279 bp):
TGATTTTATGAACCTTAAACCCTAAAATATTTTAGTTGTTGCTGAAAACCTATATAAATTCATGG
TATGTTGAGGGAAATGAAAGGGGTAGAGGATGGTGATATCTACCATGATGGTGGTTACAAATTTG
TTTTTTATAAGAAGAAATTGATTGGAGGGAGAATTAGGTTCAGGGTTTAAAGTCTAGGGTTTAGA
GTTTTTAGCAATAACCAAAATATTTTAGGGTTTAGGGTTTATAGTTCACAAAATCAATAGTTACT
TATATTATTTGTTGTATAC
Found at i:47440 original size:56 final size:56
Alignment explanation
Indices: 47371--47484 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
47361 CAATTTCTTC
* *
47371 TTGTAAAATCAAATATGTAACCACCATCATGGTAGATATCACCATCCTCTACCTCT
1 TTGTAAAAACAAATATGTAACCACCATCATGGTAGATATCACCATCCTCTACCCCT
*
47427 TTGTAAAAACAAATCTGTAACCACCATCATGGTAGATATCACCATCCTCTACCCCT
1 TTGTAAAAACAAATATGTAACCACCATCATGGTAGATATCACCATCCTCTACCCCT
47483 TT
1 TT
47485 CATTGCCCTC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (56 bp):
TTGTAAAAACAAATATGTAACCACCATCATGGTAGATATCACCATCCTCTACCCCT
Found at i:48199 original size:27 final size:30
Alignment explanation
Indices: 48168--48237 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 30
48158 ATATTTATAT
48168 ACTTTAATATAATACTCTTACAACC-C-C-
1 ACTTTAATATAATACTCTTACAACCACACA
48195 ACTTTAATATAATACTCTTACAACCACACA
1 ACTTTAATATAATACTCTTACAACCACACA
48225 ACTTTAATATAAT
1 ACTTTAATATAAT
48238 GGGTTAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 25 0.62
28 1 0.03
29 1 0.03
30 13 0.32
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (30 bp):
ACTTTAATATAATACTCTTACAACCACACA
Found at i:48502 original size:32 final size:31
Alignment explanation
Indices: 48441--48519 Score: 126
Period size: 32 Copynumber: 2.6 Consensus size: 31
48431 ACCTTCAACA
*
48441 GACTGCATGGCGACC--TACTTCTTCGCCCC
1 GACTGCATGGCGACCAATACTGCTTCGCCCC
48470 GACTGCATGGCGACCAATACCTGCTTCGCCCC
1 GACTGCATGGCGACCAATA-CTGCTTCGCCCC
48502 GACTGCATGGCGACCAAT
1 GACTGCATGGCGACCAAT
48520 CTCACCCCTG
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
29 15 0.33
31 2 0.04
32 29 0.63
ACGTcount: A:0.19, C:0.38, G:0.23, T:0.20
Consensus pattern (31 bp):
GACTGCATGGCGACCAATACTGCTTCGCCCC
Found at i:49393 original size:34 final size:31
Alignment explanation
Indices: 49332--49401 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 31
49322 TAATTTAAAT
49332 TTTAAAAAAAAAAGTTTGAAAATATTGAG-A
1 TTTAAAAAAAAAAGTTTGAAAATATTGAGAA
*
49362 TTTAAAAAAAAAAGCTTTTGATTAATAATTGAGAA
1 TTTAAAAAAAAAAG--TTTGA-AAAT-ATTGAGAA
49397 TTTAA
1 TTTAA
49402 TAAGAGTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
30 14 0.41
32 5 0.15
33 3 0.09
34 6 0.18
35 6 0.18
ACGTcount: A:0.53, C:0.01, G:0.11, T:0.34
Consensus pattern (31 bp):
TTTAAAAAAAAAAGTTTGAAAATATTGAGAA
Found at i:51008 original size:21 final size:21
Alignment explanation
Indices: 50984--51044 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
50974 AACTTTGAAA
50984 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
51005 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
51019 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
51040 AAATG
1 AAATG
51045 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:51075 original size:37 final size:37
Alignment explanation
Indices: 50976--51094 Score: 174
Period size: 35 Copynumber: 3.3 Consensus size: 37
50966 TGGTAACCAA
50976 CTTTGAAAAA-ATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATA-GGTTTTCAAAGTTTGGTAAATGTTT
51013 CTTTG-AAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
* *
51048 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
*
51085 -GTTGAAAAAT
1 CTTTGAAAAAT
51095 GATAATGGGA
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
35 30 0.39
36 18 0.24
37 28 0.37
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (37 bp):
CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:55638 original size:21 final size:21
Alignment explanation
Indices: 55614--55674 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
55604 AACTTTGAAA
55614 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
55635 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
55649 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
55670 AAATG
1 AAATG
55675 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:55705 original size:37 final size:37
Alignment explanation
Indices: 55606--55724 Score: 174
Period size: 35 Copynumber: 3.3 Consensus size: 37
55596 TGGTAACCAA
55606 CTTTGAAAAA-ATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATA-GGTTTTCAAAGTTTGGTAAATGTTT
55643 CTTTG-AAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
* *
55678 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
*
55715 -GTTGAAAAAT
1 CTTTGAAAAAT
55725 GATAATGGGA
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
35 30 0.39
36 18 0.24
37 28 0.37
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (37 bp):
CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:56848 original size:22 final size:22
Alignment explanation
Indices: 56818--56871 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
56808 ACCCTAGTCA
* *
56818 AACCGCAACCTCGCTCCGATTGT
1 AACC-CAACCTCGCTCCGATCGC
56841 AACCCAACCTCGCTCCGATCGC
1 AACCCAACCTCGCTCCGATCGC
56863 AACCCAACC
1 AACCCAACC
56872 GATCACTCGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.26, C:0.46, G:0.13, T:0.15
Consensus pattern (22 bp):
AACCCAACCTCGCTCCGATCGC
Found at i:58997 original size:2 final size:2
Alignment explanation
Indices: 58986--59032 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
58976 TTTATCTTAA
58986 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59027 AT AT AT
1 AT AT AT
59033 TAAAATGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:65837 original size:12 final size:13
Alignment explanation
Indices: 65801--65844 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
65791 GCCCCGATTA
65801 CCCGATTACCCGC
1 CCCGATTACCCGC
*
65814 CCTGATTACCCGC
1 CCCGATTACCCGC
*
65827 CCCGA-TACCCGA
1 CCCGATTACCCGC
65839 CCCGAT
1 CCCGAT
65845 AAATATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.18, C:0.50, G:0.16, T:0.16
Consensus pattern (13 bp):
CCCGATTACCCGC
Found at i:65845 original size:12 final size:13
Alignment explanation
Indices: 65800--65844 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
65790 CGCCCCGATT
65800 ACCCGATTACCCG
1 ACCCGATTACCCG
65813 -CCCTGATTACCCG
1 ACCC-GATTACCCG
*
65826 CCCCGA-TACCCG
1 ACCCGATTACCCG
65838 ACCCGAT
1 ACCCGAT
65845 AAATATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 14 0.50
13 11 0.39
14 3 0.11
ACGTcount: A:0.20, C:0.49, G:0.16, T:0.16
Consensus pattern (13 bp):
ACCCGATTACCCG
Found at i:65868 original size:2 final size:2
Alignment explanation
Indices: 65861--65900 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
65851 TAAAAATAAT
65861 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65901 TAATAAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:65904 original size:6 final size:7
Alignment explanation
Indices: 65856--65905 Score: 50
Period size: 8 Copynumber: 6.9 Consensus size: 7
65846 AATATTAAAA
65856 ATAAT-T
1 ATAATAT
65862 ATATATAT
1 ATA-ATAT
65870 ATATATAT
1 ATA-ATAT
65878 ATATATAT
1 ATA-ATAT
65886 ATATATAT
1 ATA-ATAT
65894 ATAATAT
1 ATAATAT
65901 -TAATA
1 ATAATA
65906 AATTTAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 8 0.19
7 6 0.14
8 28 0.67
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATAATAT
Found at i:65936 original size:19 final size:19
Alignment explanation
Indices: 65912--65951 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
65902 AATAAATTTA
65912 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
65931 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
65950 AT
1 AT
65952 ACCCGGCCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:65994 original size:12 final size:12
Alignment explanation
Indices: 65970--66015 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
65960 CGATTCCCAG
65970 CCCAATA-CCGA
1 CCCAATACCCGA
65981 CCCAATACCCGA
1 CCCAATACCCGA
* *
65993 CCCAATACCTGG
1 CCCAATACCCGA
66005 CCCAATACCCG
1 CCCAATACCCG
66016 TTTAAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
11 7 0.23
12 24 0.77
ACGTcount: A:0.30, C:0.48, G:0.11, T:0.11
Consensus pattern (12 bp):
CCCAATACCCGA
Found at i:65997 original size:23 final size:24
Alignment explanation
Indices: 65970--66015 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
65960 CGATTCCCAG
65970 CCCAATACC-GACCCAATACCCGA
1 CCCAATACCTGACCCAATACCCGA
*
65993 CCCAATACCTGGCCCAATACCCG
1 CCCAATACCTGACCCAATACCCG
66016 TTTAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.30, C:0.48, G:0.11, T:0.11
Consensus pattern (24 bp):
CCCAATACCTGACCCAATACCCGA
Found at i:68148 original size:2 final size:2
Alignment explanation
Indices: 68141--68174 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
68131 ATTATTTAAT
68141 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68175 GACTAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Done.