genome.fa.s6661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006661.1 Hibiscus syriacus cultivar Beakdansim tig00016484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95402

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89--133	18	2.5	18	88	0	72	13	15	44	26	1.83
1442--1486	20	2.2	20	88	0	63	37	26	17	17	1.93
1741--1788	22	2.3	21	89	7	71	25	14	39	20	1.91
1951--2084	20	6.7	20	79	9	121	23	17	24	33	1.96
1951--2087	61	2.3	60	85	1	193	23	17	24	35	1.96
1951--2105	61	2.6	61	82	3	161	22	19	23	34	1.97
2154--2207	21	2.6	21	100	0	108	29	29	16	24	1.97
7636--7682	24	2.0	23	84	12	60	31	8	6	53	1.57
8443--8481	21	1.9	20	84	5	51	23	0	10	66	1.22
8814--8839	2	13.0	2	100	0	52	50	0	0	50	1.00
10617--10665	16	3.1	16	100	0	98	26	12	18	42	1.85
13940--13989	21	2.3	23	86	6	68	56	0	10	34	1.33
16849--16896	20	2.4	20	82	6	62	25	16	20	37	1.93
18142--18179	16	2.5	15	83	16	51	5	28	0	65	1.14
19297--19360	21	3.0	21	88	4	101	23	26	23	26	2.00
23751--23780	2	15.0	2	100	0	60	50	0	0	50	1.00
25424--25448	11	2.3	11	100	0	50	44	32	0	24	1.54
25508--25546	17	2.4	17	95	4	71	43	0	5	51	1.24
29933--29958	12	2.2	12	100	0	52	30	15	0	53	1.42
41025--41155	11	13.1	9	71	19	75	74	2	7	15	1.14
41073--41154	11	7.9	10	78	16	87	74	1	6	18	1.09
41068--41139	22	3.3	22	86	13	96	75	1	5	18	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41086--41139	15	3.5	15	79	20	67	77	0	3	18	0.91
41123--41164	20	2.1	20	95	0	75	71	0	11	16	1.14
41190--41216	14	1.9	14	100	0	54	74	0	7	18	1.05
41315--41350	18	1.9	19	88	5	56	50	0	2	47	1.15
43403--43506	32	3.2	32	67	10	84	22	16	27	33	1.95
43431--43540	34	3.3	34	69	14	111	23	15	26	34	1.94
43386--43544	66	2.4	66	92	0	255	22	18	25	33	1.97
43582--43850	66	4.3	66	70	15	217	25	15	25	33	1.96
43453--43784	120	2.8	120	88	0	493	25	15	23	34	1.95
43586--43970	186	2.1	186	88	1	556	25	15	25	33	1.95
43378--43980	306	2.0	306	89	0	927	24	16	25	33	1.95
43879--44082	109	1.9	109	87	2	302	25	14	25	34	1.94
44114--44268	64	2.4	64	88	5	233	28	14	21	35	1.93
45173--45370	99	2.0	99	87	0	288	32	17	16	33	1.92
48217--48254	16	2.5	15	87	8	58	76	2	10	10	1.12
49453--49506	24	2.4	22	79	14	56	74	1	7	16	1.14
49499--49552	17	3.1	17	82	10	63	68	0	11	20	1.19
49497--49601	36	3.0	35	74	13	108	66	1	9	21	1.30
49704--49739	18	1.9	19	88	5	56	50	0	2	47	1.15
55682--55726	21	2.1	21	87	0	63	17	26	17	37	1.93
55735--55787	20	2.7	20	90	0	88	37	20	20	20	1.94
59148--59201	20	2.7	20	85	0	72	35	24	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59204--59298	33	2.8	33	83	3	109	14	20	21	44	1.87
59400--59436	14	2.6	14	86	0	56	48	21	0	29	1.50
60809--60901	42	2.2	42	80	3	107	22	17	39	20	1.92
61381--61593	20	11.4	20	80	14	204	39	20	19	20	1.92
61480--61560	33	2.4	33	85	2	99	43	20	19	16	1.88
61602--61723	54	2.3	53	85	1	154	20	20	18	40	1.92
61640--61723	20	4.5	20	74	17	90	21	19	20	39	1.93
63691--63739	20	2.5	20	89	0	71	22	20	22	34	1.97
64088--64123	18	2.0	18	89	10	56	16	16	33	33	1.92
64311--64441	20	6.6	20	94	0	226	17	20	23	38	1.93
64438--64483	21	2.2	21	88	0	65	36	17	28	17	1.92
70961--71164	75	2.7	76	84	6	256	21	24	30	23	1.99
71771--71814	17	2.6	17	85	7	63	56	29	0	13	1.38
71766--71816	9	6.2	8	78	17	52	58	27	0	13	1.36
73755--73792	20	1.9	20	88	0	58	10	26	36	26	1.89
79603--79800	75	2.6	75	88	2	272	20	24	31	23	1.98
80912--80955	18	2.4	18	85	11	63	13	22	29	34	1.93
82699--82823	31	3.9	31	72	13	110	20	22	20	36	1.96
84113--84182	34	2.1	32	84	5	86	24	31	11	32	1.91
84531--84612	21	4.0	21	90	1	112	17	30	36	15	1.91
84530--84613	41	2.0	42	88	6	127	16	29	38	15	1.90
86917--86986	34	2.1	32	84	5	86	22	28	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87336--87394	20	3.0	20	83	11	77	20	27	32	20	1.97
89372--89427	21	2.7	20	75	8	58	25	16	33	25	1.95
91232--91264	2	16.5	2	100	0	66	51	0	0	48	1.00
94699--94732	2	17.0	2	100	0	68	0	50	0	50	1.00

Tables:   1

The End!