Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006662.1 Hibiscus syriacus cultivar Beakdansim tig00016485_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114262

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5134--5174
21
1.9
21
85
5
55
36
21
17
24
1.94
13346--13387
19
2.2
19
100
0
84
40
28
21
9
1.84
27058--27178
60
2.0
61
96
1
226
41
25
8
24
1.83
33081--33218
60
2.3
59
74
9
134
30
15
17
36
1.91
33426--33553
60
2.1
60
83
0
166
36
16
14
32
1.89
34340--34468
60
2.2
58
86
5
170
40
4
18
36
1.72
39944--39993
3
16.7
3
100
0
100
66
0
0
34
0.92
46284--46315
2
16.0
2
93
0
55
46
0
0
53
1.00
46786--46824
20
2.0
20
89
0
60
28
5
2
64
1.28
46787--46832
20
2.3
20
84
0
56
26
8
2
63
1.35
50709--50754
19
2.3
20
81
7
58
28
30
17
23
1.97
55201--55232
16
2.0
16
100
0
64
37
18
12
31
1.88
60216--60304
29
3.1
29
95
0
151
30
21
20
28
1.98
64479--64506
14
2.0
14
100
0
56
21
14
14
50
1.78
64760--64840
34
2.4
34
76
12
85
13
14
20
50
1.77
64773--64824
24
2.2
24
82
0
59
11
15
25
48
1.78
64785--64844
24
2.5
24
94
0
102
10
11
21
56
1.64
64785--64834
10
4.6
10
79
18
55
8
12
24
56
1.62
64794--64844
14
3.9
14
73
19
56
9
11
21
56
1.63
65915--65945
16
1.9
16
100
0
62
9
12
19
58
1.62
65919--65963
22
2.0
22
95
0
81
6
13
24
55
1.62
65925--65967
10
4.1
10
80
11
50
9
11
20
58
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65913--65947
16
2.2
16
89
0
61
8
14
22
54
1.67
66033--66063
16
1.9
16
93
0
53
9
12
19
58
1.62
66319--66352
10
3.4
10
95
0
59
14
8
14
61
1.55
66299--66342
23
1.9
23
90
0
70
13
6
15
63
1.49
78220--78250
16
2.0
16
93
6
55
29
0
45
25
1.54
81506--81550
12
3.8
12
90
0
54
51
2
0
46
1.13
81521--81550
2
15.0
2
100
0
60
50
0
0
50
1.00
86806--86851
19
2.5
19
77
19
53
60
0
4
34
1.16
88132--88188
23
2.5
22
83
5
69
28
0
26
45
1.54
88991--89060
36
1.9
36
91
0
113
25
27
22
24
2.00
90328--90394
33
1.9
35
88
8
102
37
4
4
53
1.41
93774--93847
3
24.7
3
80
5
87
28
0
2
68
1.03
95346--95392
25
2.0
23
87
8
67
46
0
2
51
1.13
95345--95399
25
2.4
22
82
11
65
47
0
1
50
1.11
98344--98417
3
24.7
3
80
5
87
28
0
2
68
1.03
99913--99959
25
2.0
23
87
8
67
46
0
2
51
1.13
99912--99966
25
2.4
22
82
11
65
47
0
1
50
1.11
103724--103755
15
2.1
15
94
0
55
25
18
9
46
1.79
111015--111072
1
58.0
1
75
0
53
87
0
10
1
0.60
111014--111072
11
5.7
10
79
18
68
86
0
11
1
0.65
111018--111073
19
2.9
19
84
10
78
85
0
12
1
0.67
111015--111072
27
2.3
24
88
8
80
87
0
10
1
0.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112428--112827
93
4.6
88
91
4
570
27
13
21
38
1.91
112428--112868
92
5.0
91
90
4
603
29
13
20
36
1.91
112486--112827
185
1.9
176
91
5
558
27
12
21
37
1.90
113544--114262
110
6.5
112
91
4
1114
38
14
18
28
1.90
113544--114262
221
3.3
219
91
4
1141
38
14
18
28
1.90

Tables:   1

The End!