Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006663.1 Hibiscus syriacus cultivar Beakdansim tig00016500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85028

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3662--3692
15
2.1
15
100
0
62
25
29
19
25
1.99
12725--12792
32
2.2
31
84
5
93
30
17
20
30
1.96
12705--12843
32
4.5
31
70
12
88
28
18
19
33
1.96
13577--13640
12
5.5
12
77
7
69
18
14
20
46
1.83
14236--14486
125
2.0
125
98
0
484
37
7
18
36
1.79
16284--16600
158
2.0
158
98
0
616
40
9
17
33
1.81
17877--17916
21
1.9
21
100
0
80
25
22
27
25
2.00
21271--21389
3
40.0
3
98
1
231
33
0
0
66
0.92
27422--27497
38
2.0
38
97
0
143
32
15
11
39
1.84
27907--28001
3
31.7
3
93
0
136
36
1
1
61
1.10
29436--29482
14
3.5
13
80
13
51
40
2
2
55
1.24
31392--31438
14
3.5
13
80
13
51
40
2
2
55
1.24
32094--32142
18
2.8
18
78
9
57
24
0
2
73
0.94
32133--32169
15
2.7
15
88
12
53
24
5
8
62
1.44
41130--41175
10
4.6
10
84
10
67
86
0
13
0
0.56
41131--41169
11
3.6
11
93
3
62
89
0
10
0
0.48
41486--41530
16
2.8
16
83
10
56
28
8
6
55
1.56
42269--42992
83
8.7
84
91
2
1155
27
13
22
36
1.91
43660--44508
114
7.5
113
91
2
1256
37
14
19
28
1.91
43641--44508
227
3.8
226
91
2
1278
37
14
19
29
1.91
43638--44508
341
2.5
341
89
3
1315
37
14
19
29
1.91
44651--44727
3
25.7
3
94
0
136
33
0
1
64
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46868--47161
83
3.5
83
96
1
527
26
13
22
37
1.92
47912--48445
117
4.6
116
89
3
805
37
12
20
29
1.89
48761--48816
3
18.7
3
100
0
112
33
0
0
66
0.92
48812--48843
11
2.8
11
95
4
55
56
0
0
43
0.99
50249--50295
14
3.5
13
80
13
51
40
2
2
55
1.24
64182--64228
23
2.0
23
87
4
67
27
2
0
70
0.99
74319--74366
25
2.0
24
88
12
71
50
4
4
41
1.41
78143--78218
36
2.1
36
85
7
100
47
1
3
47
1.29
79278--79488
116
1.8
116
87
2
316
36
10
4
47
1.58
82964--82994
12
2.6
12
100
0
62
54
6
22
16
1.64
83770--83810
22
1.9
22
90
5
66
34
21
21
21
1.97

Tables:   1

The End!