genome.fa.s6664.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006664.1 Hibiscus syriacus cultivar Beakdansim tig00016507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138679

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4189--4265	23	3.5	21	74	19	68	24	25	23	25	2.00
4208--4264	22	2.5	22	82	2	69	24	26	24	24	2.00
8119--8334	116	1.9	117	82	6	278	28	15	8	47	1.75
15472--15496	13	1.9	13	100	0	50	56	8	20	16	1.65
19603--19628	13	2.0	13	100	0	52	76	0	0	23	0.78
19738--19800	3	21.0	3	80	0	54	25	31	7	34	1.85
21710--21764	17	3.2	17	76	19	53	69	0	1	29	0.99
21938--21979	17	2.5	17	100	0	84	21	4	38	35	1.75
22820--22913	8	11.6	8	68	18	52	43	2	2	52	1.25
23014--23075	23	2.7	24	80	9	76	38	1	0	59	1.07
23052--23128	19	3.9	19	71	15	68	46	1	1	50	1.17
23149--23223	27	2.8	26	69	23	66	50	1	2	45	1.24
23343--23370	14	2.0	14	100	0	56	50	0	0	50	1.00
24351--24393	2	21.5	2	100	0	86	51	0	0	48	1.00
24616--24661	2	23.0	2	100	0	92	50	0	0	50	1.00
25640--25696	23	2.4	23	77	5	62	19	14	3	63	1.44
25648--25692	24	1.9	23	86	4	63	20	17	2	60	1.47
25934--25975	17	2.4	18	80	15	52	21	7	0	71	1.09
25934--25970	19	2.0	20	85	15	53	21	5	0	72	1.04
26000--26097	5	19.6	5	72	13	60	17	8	2	72	1.18
26058--26098	18	2.2	19	83	12	50	19	2	0	78	0.87
26052--26097	21	2.1	23	88	8	69	17	4	0	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28385--28428	19	2.3	19	100	0	88	43	20	27	9	1.82
36382--36507	65	2.0	64	82	7	157	57	8	19	13	1.62
36480--36596	1	117.0	1	72	0	90	86	0	13	0	0.58
36481--36591	7	15.6	7	92	7	188	86	0	13	0	0.57
41683--41717	13	2.9	12	91	8	54	17	2	0	80	0.84
41985--42023	17	2.2	18	86	13	55	17	2	0	79	0.84
51895--52052	21	7.8	20	72	7	86	38	25	17	18	1.92
52019--52288	20	13.5	20	83	4	303	35	25	18	20	1.95
52971--53017	24	2.0	24	87	8	69	25	14	21	38	1.92
55331--55495	33	4.7	34	81	13	183	46	18	21	13	1.83
55345--55533	19	10.7	19	78	17	219	45	17	21	15	1.85
55331--55533	52	3.9	52	86	10	281	45	18	21	14	1.85
55542--55691	19	8.4	19	82	14	203	14	22	17	46	1.84
55523--55691	52	3.2	52	98	0	320	13	24	17	44	1.85
55523--55673	33	4.4	33	71	18	137	13	24	17	44	1.85
55798--55834	14	2.6	14	91	0	65	45	21	0	32	1.52
57808--57864	14	3.7	14	77	20	60	45	22	21	10	1.82
57789--57881	33	2.8	33	95	0	168	47	21	20	10	1.80
57752--57886	19	7.6	19	76	16	128	45	23	19	11	1.82
57882--57972	33	2.8	33	91	5	141	7	18	28	45	1.77
57882--58009	19	7.3	19	74	18	116	8	17	28	45	1.78
58057--58431	93	4.1	93	98	1	727	45	19	12	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60132--60221	14	5.7	14	72	23	72	43	23	24	8	1.82
60124--60238	33	3.5	33	97	0	221	46	20	23	9	1.80
60146--60243	19	5.7	19	71	22	90	43	22	23	10	1.83
60255--60311	14	3.7	14	70	20	51	10	24	21	43	1.83
60239--60357	33	3.4	33	84	6	139	11	22	21	44	1.84
60295--60369	19	3.8	20	80	5	89	14	24	18	42	1.88
60448--60518	33	2.2	33	92	0	115	47	18	22	11	1.80
60696--60750	22	2.5	22	81	0	74	20	16	40	23	1.91
60897--61050	20	7.7	20	81	7	168	18	18	26	37	1.93
60896--61050	40	3.8	40	82	4	186	18	18	26	37	1.93
61314--61376	20	3.0	21	72	13	58	66	0	4	28	1.12
62141--62572	90	4.8	90	92	0	675	30	15	22	30	1.96
62150--62577	181	2.4	180	90	1	678	30	15	23	29	1.96
63386--63441	27	2.1	27	93	3	96	28	26	17	26	1.98
65288--65322	15	2.3	15	100	0	70	14	22	34	28	1.93
72136--72200	15	4.3	15	98	0	121	15	24	32	27	1.95
74246--74298	21	2.5	20	91	8	88	58	0	35	5	1.22
74571--74948	139	2.7	134	81	6	398	27	13	13	45	1.81
90984--91022	5	7.8	5	82	0	51	61	20	0	17	1.34
92632--92681	20	2.4	21	76	6	57	50	24	0	26	1.50
92695--92727	15	2.2	15	94	0	57	15	48	24	12	1.78
93286--93343	30	1.9	30	86	6	82	50	13	8	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95756--95814	3	19.3	3	92	3	100	35	0	0	64	0.94
99898--99927	15	2.1	15	93	6	53	13	20	13	53	1.72
101652--101683	2	16.0	2	100	0	64	50	0	0	50	1.00
103186--103248	32	2.0	32	87	3	92	28	14	26	30	1.95
103477--103544	35	1.9	35	88	5	102	39	16	11	32	1.84
104632--104674	20	2.2	20	86	0	59	34	13	16	34	1.88
108103--108131	15	1.9	15	100	0	58	48	27	6	17	1.72
108665--108689	9	2.8	9	100	0	50	24	8	20	48	1.76
113024--113064	21	2.0	21	85	0	55	17	21	0	60	1.35
115681--115723	20	2.2	20	86	0	59	34	13	16	34	1.88
117566--117626	21	2.9	20	90	4	86	18	22	26	32	1.97
117588--117636	21	2.2	21	82	7	53	16	26	24	32	1.96
118281--118314	17	2.1	17	88	5	52	47	2	14	35	1.60
119394--119439	21	2.2	21	96	0	83	36	4	32	26	1.76
119392--119447	21	2.5	23	80	11	80	41	5	30	23	1.76
120644--120699	21	2.7	21	94	0	94	46	7	14	32	1.71
122081--122133	21	2.5	21	87	0	88	16	20	28	33	1.95
122909--123350	131	3.4	128	81	6	485	26	32	17	23	1.96
124761--124823	30	2.1	30	93	0	108	39	4	22	33	1.75
125046--125131	23	3.7	23	72	14	86	20	23	24	31	1.98
125656--125693	20	1.9	20	89	10	60	23	23	23	28	1.99
134527--134559	16	2.1	16	88	5	50	12	9	3	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134446--134634	100	1.9	97	87	5	272	17	6	13	62	1.52
137594--137626	16	2.1	16	88	11	50	75	0	6	18	1.00
137610--137664	23	2.2	25	78	15	62	70	0	3	25	1.03
137595--137677	40	2.2	39	81	12	102	71	0	3	25	1.02
137634--137694	27	2.3	26	83	10	79	70	0	3	26	1.02
137723--137765	16	3.0	14	90	10	61	62	0	2	34	1.08

Tables:   1

The End!