genome.fa.s6667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006667.1 Hibiscus syriacus cultivar Beakdansim tig00016512_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123713

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2244--2322	41	1.9	41	94	0	140	40	2	15	41	1.60
4249--4278	15	2.0	15	100	0	60	40	20	20	20	1.92
4791--4828	18	2.1	18	100	0	76	15	28	10	44	1.80
11965--12008	22	2.0	23	86	4	63	22	11	9	56	1.62
11963--12012	21	2.3	22	80	12	59	22	12	10	56	1.65
15173--15210	16	2.4	16	95	0	67	44	7	34	13	1.72
19149--19181	16	2.0	17	88	5	50	75	0	12	12	1.04
19409--19443	16	2.2	16	100	0	70	37	11	22	28	1.89
20454--20614	37	4.4	37	87	0	198	41	16	18	23	1.90
26256--26351	35	2.6	35	85	6	111	38	14	13	33	1.85
27010--27043	16	2.1	16	88	0	50	32	5	0	61	1.20
31802--31871	7	9.1	8	77	13	51	80	5	14	0	0.89
31810--31871	19	3.2	20	82	15	76	80	4	14	0	0.87
31802--31880	14	5.8	14	75	20	78	79	6	13	0	0.91
31801--31880	27	3.0	28	78	10	96	78	7	13	0	0.95
32497--32547	22	2.3	22	96	0	93	35	27	11	25	1.91
33409--33513	36	2.9	37	92	1	167	23	23	13	39	1.90
33427--33884	102	4.5	102	92	0	754	30	20	12	36	1.90
33631--33717	37	2.4	37	88	1	122	25	20	13	40	1.89
33785--33949	65	2.6	65	94	2	289	32	19	12	36	1.88
33667--33981	167	1.9	169	91	1	517	30	20	12	37	1.89
34057--34128	37	1.9	37	82	0	90	29	22	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34487--35446	203	4.6	204	82	7	1045	32	24	21	21	1.98
34474--35449	109	9.4	105	78	7	904	32	24	21	21	1.98
35914--36009	35	2.6	35	86	6	120	38	14	14	32	1.87
36416--36501	11	7.3	11	72	21	50	34	2	2	60	1.22
36462--36492	15	2.1	15	93	0	53	35	0	0	64	0.94
36667--36700	16	2.1	16	88	0	50	32	5	0	61	1.20
47218--47423	109	1.9	109	90	0	331	30	16	16	35	1.92
56585--56660	31	2.4	31	80	2	89	27	31	26	14	1.95
61796--61871	31	2.4	31	77	2	80	27	30	26	15	1.96
74783--75365	303	1.9	301	88	1	880	36	19	15	27	1.93
75846--75928	24	3.4	25	86	6	118	38	20	15	25	1.92
77073--77107	18	1.9	18	88	0	52	28	17	0	54	1.43
78410--78448	18	2.2	18	95	0	69	12	20	48	17	1.80
81648--81999	44	8.0	44	90	1	528	33	23	26	17	1.96
81625--81999	133	2.8	132	91	2	576	33	23	26	17	1.96
92194--92279	38	2.3	38	77	18	90	65	4	3	26	1.29
92876--92916	22	1.9	22	85	5	57	39	0	2	58	1.11
93484--93528	23	2.0	23	86	4	65	64	17	6	11	1.46
95861--95917	28	2.1	27	83	3	69	52	3	3	40	1.35
98890--98938	20	2.5	20	93	3	82	16	24	44	14	1.84
102044--102115	31	2.3	32	83	4	94	34	31	18	15	1.92
103714--103862	72	2.1	72	84	0	190	21	19	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109985--110032	9	5.3	9	85	7	53	60	0	2	37	1.09
110208--110360	37	4.2	37	90	1	245	23	20	23	32	1.98
110218--110360	73	2.0	73	94	0	250	23	21	23	31	1.98
110351--110478	42	3.1	42	78	6	111	34	22	14	28	1.94
110397--110484	42	2.1	42	89	0	131	32	21	17	28	1.96
110319--110613	161	1.8	162	86	3	425	30	21	18	29	1.97
110733--110833	42	2.4	41	81	3	130	29	22	23	23	1.99
110523--111420	215	4.2	215	93	0	1523	31	19	16	32	1.94
111406--111816	36	11.3	36	86	2	493	24	19	21	33	1.97
111406--111816	108	3.8	108	86	3	547	24	19	21	33	1.97
118050--118104	21	2.6	21	97	0	101	16	16	21	45	1.85
120410--120458	25	1.9	26	83	4	64	53	4	0	42	1.20
120570--120609	21	1.9	21	84	0	53	60	12	7	20	1.56
121921--121958	9	4.3	9	90	6	51	57	0	0	42	0.98

Tables:   1

The End!