genome.fa.s6668.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006668.1 Hibiscus syriacus cultivar Beakdansim tig00016516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77239

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3071--3131	3	21.0	3	90	6	99	31	0	1	67	1.01
4259--4348	2	45.0	2	100	0	180	50	0	0	50	1.00
6022--6082	17	3.4	18	77	11	54	44	0	1	54	1.10
6001--6089	34	2.7	32	75	10	90	40	0	2	57	1.11
6226--6279	17	3.2	17	72	0	54	31	0	3	64	1.11
7860--7932	21	3.5	21	88	7	112	17	34	27	20	1.95
8455--8551	33	2.9	34	85	3	133	55	4	3	37	1.35
8453--8558	34	3.2	33	82	8	133	54	4	2	37	1.36
8952--9559	127	4.9	128	89	8	880	32	19	25	22	1.98
9155--9378	111	2.0	111	92	3	371	31	20	26	21	1.98
9027--9505	238	2.0	239	90	2	759	32	19	25	22	1.98
9632--9672	8	5.2	8	82	5	57	36	29	0	34	1.58
21315--21359	22	2.0	22	91	0	72	37	11	22	28	1.88
22054--22139	41	2.1	41	91	0	136	34	9	10	45	1.71
22931--22979	15	3.1	16	85	8	73	36	0	0	63	0.95
26160--26234	33	2.3	33	88	0	105	41	1	0	57	1.07
26160--26213	3	18.0	3	84	0	72	37	0	0	62	0.95
26352--26396	23	2.0	23	100	0	90	13	48	13	24	1.78
26814--26863	22	2.3	22	89	6	75	22	14	42	22	1.88
28335--28392	28	2.1	27	84	6	73	32	5	1	60	1.29
28335--28394	30	2.1	28	82	11	70	31	5	1	61	1.27
32833--32880	16	2.9	16	90	9	71	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33334--33400	32	2.1	32	82	0	80	49	16	13	20	1.79
34677--34715	19	2.1	19	90	0	60	23	25	23	28	1.99
34720--34778	12	5.3	11	72	15	50	18	45	22	13	1.84
34714--34778	22	3.0	22	90	0	103	20	46	21	12	1.83
34730--34771	10	4.0	10	85	11	57	19	50	21	9	1.75
41950--42043	9	9.8	9	75	12	80	18	25	27	28	1.98
41950--42043	19	4.9	19	85	8	102	18	25	27	28	1.98
41951--42043	29	3.2	28	83	8	107	17	25	27	29	1.97
41950--42043	10	9.7	10	80	10	106	18	25	27	28	1.98
42045--42105	17	3.3	17	79	20	77	18	45	22	13	1.83
42046--42112	22	3.0	22	88	4	98	17	44	23	13	1.85
42095--42125	7	4.4	7	100	0	62	16	29	29	25	1.96
42051--42093	12	3.8	12	87	12	72	18	46	23	11	1.82
45392--45565	70	2.4	72	80	6	192	33	17	20	27	1.96
46906--46984	22	3.6	22	91	0	131	31	16	13	37	1.88
47654--47966	45	6.8	46	89	4	425	25	22	18	32	1.97
47654--47966	93	3.4	93	89	2	443	25	22	18	32	1.97
48217--48303	3	29.0	3	83	0	102	39	1	1	58	1.13
48342--48424	21	4.0	21	90	1	132	27	33	27	10	1.90
50741--50774	14	2.4	14	90	0	50	32	5	14	47	1.69
52609--52924	44	7.2	44	74	3	215	28	17	24	29	1.97
52609--52824	88	2.5	88	86	0	279	29	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52608--52927	132	2.4	128	78	5	336	29	16	24	29	1.97
58881--59341	230	2.0	230	96	0	859	37	15	13	33	1.87
60382--60463	32	2.6	32	92	3	112	43	12	8	35	1.72
60382--60453	32	2.2	32	100	0	144	45	11	9	33	1.72
63476--63516	18	2.3	18	91	0	64	17	51	21	9	1.74
63493--63522	13	2.3	13	100	0	60	16	46	23	13	1.82
63458--63522	31	2.1	31	88	0	94	18	49	18	13	1.80
63501--63542	20	2.1	20	90	0	66	14	38	23	23	1.92
65924--66035	24	4.7	24	84	4	145	23	15	19	41	1.89
70503--70614	24	4.7	24	87	4	145	23	15	19	41	1.89
72344--72535	83	2.3	83	88	1	269	32	22	15	28	1.95
72406--72669	83	3.2	82	78	6	266	29	23	16	29	1.96
74192--74233	22	2.0	20	86	9	57	28	4	2	64	1.26
74310--74343	15	2.2	16	89	5	52	50	0	0	50	1.00

Tables:   1

The End!