genome.fa.s6669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006669.1 Hibiscus syriacus cultivar Beakdansim tig00016522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62312

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11877--12405	91	5.8	90	86	3	695	38	16	20	24	1.92
12061--12124	17	3.3	19	67	20	51	40	12	23	23	1.88
11877--12402	273	1.9	273	89	2	824	38	16	19	25	1.92
12395--12472	36	2.2	36	97	0	147	28	21	20	29	1.98
12947--12975	4	7.2	4	100	0	58	24	0	0	75	0.80
17167--17253	38	2.3	38	86	5	124	13	10	36	39	1.79
17634--17719	38	2.3	38	85	4	120	15	10	36	38	1.81
17894--17925	5	6.2	5	92	7	55	0	18	56	25	1.42
17712--18103	199	2.0	199	91	0	631	25	12	26	34	1.92
18093--18165	38	1.9	38	94	2	130	13	10	35	39	1.80
18741--18785	18	2.7	16	82	6	54	28	22	6	42	1.79
20709--20753	3	15.3	3	95	4	83	35	0	0	64	0.94
23747--23772	12	2.2	12	100	0	52	19	46	23	11	1.82
23791--23889	4	26.5	4	69	13	68	49	0	0	50	1.00
23791--23889	6	17.7	6	78	12	68	49	0	0	50	1.00
26830--26872	18	2.5	17	81	7	52	30	0	20	48	1.50
37108--37615	127	4.0	127	94	0	890	21	23	21	33	1.97
38044--38149	34	3.1	34	89	1	160	37	3	5	52	1.43
38684--38764	42	1.9	42	82	0	99	25	18	32	23	1.97
38736--38775	21	1.9	21	94	0	71	30	22	25	22	1.99
38739--38785	21	2.2	21	84	0	58	36	21	19	23	1.95
40371--40419	15	3.0	17	73	11	57	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40371--40441	29	2.3	33	81	13	89	56	0	0	43	0.99
40371--40452	32	2.6	32	78	7	87	56	1	0	42	1.07
45296--45358	31	2.0	31	96	0	117	34	14	26	23	1.93
47341--47467	31	4.2	31	84	3	177	25	28	13	33	1.93
48400--48433	15	2.3	15	89	0	50	8	17	64	8	1.47
61778--61838	30	2.0	30	100	0	122	26	18	32	22	1.97

Tables:   1

The End!