genome.fa.s667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000667.1 Hibiscus syriacus cultivar Beakdansim tig00001297_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196013

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6716--6742	2	13.5	2	100	0	54	48	0	0	51	1.00
11077--11133	28	2.0	28	89	0	87	33	21	15	29	1.94
18280--18467	31	6.0	31	73	6	155	32	17	17	31	1.93
18317--18470	63	2.4	63	94	0	263	31	18	16	33	1.93
22815--22930	32	3.7	31	80	12	146	31	18	18	32	1.94
22797--22950	63	2.4	63	94	0	263	32	18	16	32	1.93
22774--22947	31	5.5	31	74	14	151	33	17	17	31	1.93
24995--25050	23	2.4	23	87	0	76	17	25	26	30	1.97
26027--26833	400	2.0	401	95	1	1463	31	20	17	30	1.96
42423--42448	12	2.2	12	100	0	52	34	15	19	30	1.93
46459--46496	19	2.0	19	94	0	67	28	5	10	55	1.56
46512--46642	21	6.4	21	69	7	90	21	18	22	37	1.94
46535--46646	40	2.8	39	89	5	170	19	16	23	40	1.91
46501--46634	61	2.2	60	78	2	153	23	18	20	37	1.94
54305--54333	2	14.5	2	100	0	58	0	48	0	51	1.00
58314--58341	13	2.2	13	100	0	56	46	17	7	28	1.75
63411--63435	2	12.5	2	100	0	50	48	0	0	52	1.00
74631--74678	19	2.5	19	83	12	55	16	14	0	68	1.21
76894--76933	2	20.5	2	84	5	55	50	0	2	47	1.14
80589--80629	8	5.2	8	82	5	57	34	0	29	36	1.58
80697--81427	126	5.8	126	99	0	1426	22	25	20	32	1.98
81812--81911	33	3.0	34	83	2	139	39	3	4	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82276--82305	9	3.3	9	100	0	60	36	13	30	20	1.90
82439--82532	21	4.5	21	92	5	129	20	26	35	18	1.95
82536--82583	21	2.3	21	85	0	60	22	12	39	25	1.89
84302--84389	33	2.7	31	82	5	104	60	2	0	37	1.10
84322--84357	18	1.9	19	88	5	56	61	2	0	36	1.11
84302--84380	33	2.4	34	83	10	110	62	1	0	36	1.04
85493--85650	21	7.8	20	72	7	86	38	25	17	18	1.92
85617--85926	20	15.5	20	87	1	343	37	24	17	20	1.93
86609--86655	24	2.0	24	87	8	69	25	14	21	38	1.92
89077--89241	33	4.7	34	79	13	174	46	17	21	14	1.83
89091--89279	19	10.7	19	77	17	210	45	17	21	15	1.85
89077--89279	52	3.9	52	85	10	272	45	17	21	15	1.85
89288--89366	19	4.4	19	80	16	105	13	22	17	45	1.84
89473--89509	14	2.6	14	91	0	65	45	21	0	32	1.52
91415--91543	19	7.3	19	75	17	125	8	17	28	45	1.77
91415--91506	33	2.8	33	93	3	150	7	18	28	45	1.76
91591--91966	93	4.1	93	97	0	709	46	18	12	22	1.83
91724--91756	17	1.9	17	88	11	50	45	15	15	24	1.84
93661--93775	33	3.5	33	96	0	212	46	20	21	11	1.81
93683--93780	19	5.7	19	69	22	90	44	21	22	11	1.83
93669--93758	14	5.7	14	68	23	54	44	22	22	11	1.84
93792--93848	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93776--93856	33	2.5	33	95	0	144	8	22	22	46	1.78
93833--93908	21	3.7	21	83	3	109	13	25	15	46	1.82
93832--93909	41	1.9	41	97	0	147	14	25	15	44	1.84
93985--94055	33	2.2	33	92	0	115	47	18	22	11	1.80
94237--94291	22	2.5	22	81	0	74	20	16	40	23	1.91
94437--94571	40	3.3	40	82	5	182	19	17	26	36	1.94
94438--94571	20	6.7	20	81	6	155	19	17	26	35	1.94
95288--95319	3	10.3	3	93	6	55	68	0	0	31	0.90
101292--102237	472	2.0	472	99	0	1883	25	19	17	37	1.93
105625--105790	82	2.0	82	98	0	323	26	15	16	41	1.88
110022--110205	45	4.1	45	94	2	298	22	26	16	34	1.95
112768--112862	45	2.1	45	90	0	154	21	30	11	36	1.89
112862--112957	45	2.1	46	88	1	140	21	32	9	36	1.86
118877--118932	29	1.9	29	82	7	69	51	17	7	23	1.70
119267--119307	16	2.6	16	88	3	57	29	21	12	36	1.90
120701--120757	24	2.4	24	84	0	78	50	17	12	19	1.77
120703--120762	12	5.0	12	74	8	50	48	18	13	20	1.81
121785--121842	25	2.2	27	78	9	66	22	18	17	41	1.90
123319--123364	18	2.6	18	89	0	65	15	13	50	21	1.78
123306--123359	13	3.8	13	76	21	54	16	16	48	18	1.82
126849--127071	117	1.9	117	92	0	374	32	19	31	16	1.94
126864--127152	117	2.5	116	83	5	307	33	18	32	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127760--127794	15	2.3	15	95	0	61	20	11	31	37	1.88
130958--131067	39	2.9	40	86	8	149	31	10	29	28	1.91
134121--134170	24	2.0	24	84	3	64	50	0	2	48	1.12
136706--136752	20	2.3	20	100	0	94	46	12	27	12	1.78
142113--142172	10	6.2	10	83	14	72	21	0	0	78	0.75
142119--142165	6	8.0	6	84	13	62	19	0	0	80	0.70
142114--142159	23	2.0	23	91	8	76	17	0	0	82	0.67
142119--142176	13	4.5	13	83	10	57	24	0	0	75	0.80
142120--142189	6	11.5	6	78	14	54	27	1	0	71	0.94
142113--142172	29	2.1	29	90	0	93	21	0	0	78	0.75
142139--142186	10	4.9	10	84	5	53	31	2	0	66	1.03
142690--142734	23	2.0	23	86	0	63	71	8	20	0	1.12
152495--152583	43	2.1	43	95	0	160	42	8	4	43	1.56
161432--161481	2	25.0	2	100	0	100	50	0	0	50	1.00
166744--166798	28	2.0	28	85	0	74	32	16	18	32	1.93
169528--169568	16	2.6	16	100	0	82	26	17	4	51	1.65
171868--171938	2	35.5	2	100	0	142	50	0	0	49	1.00
176280--176317	2	19.0	2	100	0	76	50	0	0	50	1.00
177148--177217	2	35.0	2	100	0	140	50	0	0	50	1.00
178875--178961	29	3.0	29	94	0	147	22	35	26	14	1.94
179613--179656	21	2.1	21	91	0	70	29	0	15	54	1.42
180488--180546	26	2.3	25	75	18	66	47	8	3	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183413--183670	26	10.4	25	76	15	184	43	2	10	43	1.52
183358--183606	124	2.0	124	96	1	464	44	2	10	43	1.51
183439--183670	98	2.4	98	98	0	455	43	2	10	43	1.51
185014--185102	45	1.9	47	86	8	130	44	12	0	42	1.42
185014--185115	45	2.2	46	84	8	127	46	12	0	41	1.42
185040--185171	41	3.2	39	76	14	88	46	10	0	42	1.44
185306--185364	21	2.9	21	92	2	93	1	37	0	61	1.07
185367--185412	23	2.0	23	100	0	92	8	39	4	47	1.54
185502--185536	18	1.9	18	100	0	70	28	25	17	28	1.97
185541--185614	37	2.0	37	97	2	141	24	13	45	16	1.83
191721--191749	12	2.5	12	94	5	51	27	0	10	62	1.28
191961--191995	18	1.9	18	94	0	61	8	51	17	22	1.72
195291--195323	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1

The End!