genome.fa.s6670.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006670.1 Hibiscus syriacus cultivar Beakdansim tig00016531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93626

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1747--2188	131	3.4	128	81	6	485	26	32	17	23	1.96
3586--3648	30	2.1	30	93	0	108	39	4	22	33	1.75
3890--3975	23	3.7	23	72	14	86	20	23	24	31	1.98
4502--4539	20	1.9	20	89	10	60	23	23	23	28	1.99
13299--13494	101	2.0	100	87	3	286	17	7	12	62	1.53
13382--13414	16	2.1	16	88	5	50	12	9	3	75	1.14
16462--16517	16	3.2	17	77	10	60	73	0	3	23	0.99
16459--16572	47	2.4	46	75	16	110	71	0	4	23	1.10
16451--16571	16	7.8	16	65	19	53	69	0	4	24	1.14
16528--16570	15	2.9	14	75	24	52	65	0	4	30	1.13
16520--16578	30	2.0	30	89	0	91	66	1	5	27	1.22
16608--16702	25	4.0	23	76	13	68	62	0	7	30	1.23
17793--17881	37	2.4	37	96	3	162	30	8	17	42	1.80
18026--18063	15	2.5	15	86	0	58	42	18	21	18	1.90
18054--18240	102	1.8	102	84	6	254	41	11	17	30	1.84
18388--18642	106	2.4	106	84	3	352	25	18	21	34	1.96
19258--19370	32	3.5	32	81	3	129	38	19	12	30	1.88
20438--20488	13	3.8	13	80	12	59	1	17	3	76	1.03
22208--22258	13	3.8	14	82	15	63	3	17	3	74	1.12
22208--22260	28	2.0	26	89	10	81	3	16	3	75	1.10
25330--25383	26	2.0	27	86	10	76	72	5	7	14	1.26
25332--25394	26	2.5	25	77	12	74	74	4	4	15	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25377--25418	19	2.2	19	87	8	59	78	2	2	16	0.96
25377--25418	10	4.4	9	82	17	50	78	2	2	16	0.96
25332--25418	29	3.0	28	74	12	70	74	4	4	16	1.15
25462--25498	19	2.0	18	89	5	56	72	0	13	13	1.11
25463--25506	19	2.3	18	81	11	52	77	0	9	13	0.99
25601--25714	29	3.6	31	72	19	83	70	0	4	24	1.11
25660--25718	29	2.0	30	90	3	93	67	0	5	27	1.11
25746--25818	2	37.0	2	87	8	105	49	0	4	46	1.21
25783--25848	25	2.7	23	73	13	51	63	0	3	33	1.10
28414--28477	10	6.7	10	78	10	53	23	0	3	73	0.97
30716--30852	57	2.4	56	81	4	141	40	5	23	30	1.78
30972--31038	24	2.8	24	77	6	75	23	22	22	31	1.98
31867--31939	36	2.0	37	86	5	103	30	5	4	60	1.38
36254--36307	20	2.7	19	75	8	63	33	31	18	16	1.93
36342--36394	20	2.7	20	88	5	72	43	22	18	15	1.87
36403--36480	21	3.8	21	77	3	95	35	26	17	19	1.94
36403--36480	41	1.9	41	89	0	120	35	26	17	19	1.94
37038--37091	25	2.1	25	83	10	65	55	16	11	16	1.68
37154--37209	20	2.8	20	89	10	96	41	21	23	14	1.89
37145--37276	19	7.1	19	79	11	121	46	20	20	12	1.83
37299--37374	20	3.8	20	76	11	75	13	18	15	52	1.74
37932--38141	20	10.4	20	79	6	217	18	18	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37934--38129	40	4.8	41	92	1	324	18	18	24	38	1.93
38154--38206	20	2.7	20	91	5	81	13	18	24	43	1.86
37931--38206	40	6.8	39	77	10	218	18	18	24	38	1.92
38256--38309	20	2.7	19	75	8	63	16	18	31	33	1.93
49120--49182	31	2.0	33	87	6	94	50	11	6	31	1.63
51994--52034	2	20.5	2	100	0	82	51	0	0	48	1.00
53579--53699	35	3.4	35	84	10	163	33	4	18	44	1.68
58116--58237	35	3.4	36	82	12	144	33	5	18	42	1.74
58968--59030	30	2.1	31	84	3	83	36	19	6	38	1.77
59886--59934	23	2.1	23	84	0	62	34	8	14	42	1.75
60167--60235	15	4.3	16	72	15	54	17	26	34	21	1.95
60179--60235	15	3.7	15	75	9	60	15	26	36	21	1.93
60169--60231	32	2.0	32	90	0	99	17	22	36	23	1.95
65540--65573	2	17.0	2	93	0	59	47	0	0	52	1.00
67923--67978	2	28.0	2	96	0	103	51	48	0	0	1.00
67978--68039	2	31.0	2	100	0	124	50	0	0	50	1.00
68058--68108	25	2.0	25	84	3	66	47	0	0	52	1.00
68388--68441	2	27.0	2	100	0	108	50	0	0	50	1.00
72520--72569	23	2.2	23	85	0	64	40	10	8	42	1.68
80553--80593	21	2.0	21	85	9	57	41	0	4	53	1.22
80518--80590	25	3.0	24	76	9	67	35	1	4	58	1.25
85129--85168	16	2.3	18	87	8	57	20	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93114--93145	14	2.3	14	94	0	55	28	9	0	62	1.26

Tables:   1

The End!