genome.fa.s6671.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006671.1 Hibiscus syriacus cultivar Beakdansim tig00016532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77313

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794--833	19	2.1	19	95	0	71	32	37	5	25	1.77
2257--2298	19	2.2	19	100	0	84	35	28	9	26	1.88
3381--3411	2	16.0	2	93	6	55	51	0	0	48	1.00
4989--5073	29	2.8	31	87	7	111	16	3	4	75	1.11
11903--12259	151	2.4	151	87	0	500	36	17	9	36	1.82
14477--14536	28	2.1	28	100	0	120	23	21	33	21	1.97
30138--30193	24	2.3	24	96	0	103	10	25	5	58	1.52
31646--31679	2	17.0	2	93	0	50	44	50	5	0	1.26
34211--34241	3	10.3	3	100	0	62	35	0	0	64	0.94
34985--35044	31	1.9	31	93	0	102	40	6	10	43	1.64
35655--35708	18	2.8	20	80	8	67	66	0	0	33	0.92
35739--35823	14	6.5	14	69	20	67	55	1	1	42	1.15
35718--35846	64	2.0	65	96	1	242	55	1	0	42	1.15
35777--35864	24	3.4	27	79	16	105	55	2	0	42	1.12
35777--35864	28	3.4	28	80	15	116	55	2	0	42	1.12
35718--35869	64	2.4	64	90	5	236	55	1	0	41	1.16
43873--43916	23	1.9	23	85	0	61	63	0	2	34	1.07
44233--44268	19	1.9	19	88	5	56	52	2	2	41	1.30
44233--44280	19	2.5	19	83	10	53	56	2	2	39	1.23
46004--46467	242	1.9	239	85	3	628	25	20	20	33	1.97
47834--47967	44	3.1	44	85	4	200	20	15	14	48	1.81
47818--47960	42	3.4	42	84	4	189	20	13	13	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51480--51553	38	1.9	38	83	0	94	40	13	8	37	1.74
53930--54003	38	1.9	38	83	0	94	40	13	8	37	1.74
54787--54826	21	1.9	21	84	0	53	27	22	7	42	1.80
56270--56346	30	2.5	31	91	4	120	38	3	22	35	1.72
56596--56706	23	5.2	23	64	24	80	46	18	10	23	1.80
56570--56717	42	3.5	42	99	0	287	48	20	8	22	1.75
56577--56683	19	5.2	19	64	24	56	50	19	7	22	1.72
59211--59264	24	2.3	23	90	3	81	50	9	7	33	1.62
59977--60021	23	2.0	23	86	0	63	22	24	11	42	1.86
62528--62553	12	2.2	12	100	0	52	15	15	53	15	1.73
63208--63270	23	2.5	26	78	17	71	57	0	1	41	1.08
63460--63493	17	1.9	18	88	5	52	52	0	0	47	1.00
65498--65523	13	2.0	13	100	0	52	15	7	38	38	1.76
70033--70082	24	2.1	24	88	0	73	36	12	30	22	1.90
71934--72009	37	2.1	37	92	0	125	35	15	22	26	1.94
75983--76027	20	2.2	20	88	0	63	42	20	22	15	1.89
75912--76007	48	2.0	46	80	7	104	36	12	20	30	1.90
76088--76182	40	2.4	39	85	5	129	38	18	17	24	1.92
76071--76182	20	5.7	19	73	11	93	38	20	18	22	1.93
76482--76533	20	2.6	20	84	6	70	19	15	21	44	1.87

Tables:   1

The End!