genome.fa.s6672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006672.1 Hibiscus syriacus cultivar Beakdansim tig00016533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72057

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041--1082	22	1.9	22	85	0	57	54	28	11	4	1.57
5620--5751	66	2.0	67	90	1	212	30	15	21	31	1.95
6913--7288	3	115.0	3	70	13	119	9	26	4	60	1.46
6920--7131	24	8.7	24	83	10	186	9	25	4	60	1.48
6917--7273	27	12.6	27	80	13	382	9	25	4	59	1.48
6943--7053	36	3.1	36	90	5	172	8	25	2	63	1.35
7518--7905	196	2.0	197	94	1	690	39	13	14	32	1.85
11680--11704	2	12.5	2	100	0	50	52	0	48	0	1.00
19319--19345	11	2.5	11	100	0	54	25	18	25	29	1.98
24483--24606	66	1.9	63	83	9	160	36	19	19	25	1.95
25199--25290	22	4.4	22	89	5	138	16	25	31	27	1.96
25257--25291	18	1.9	18	100	0	70	17	22	34	25	1.96
31377--31498	65	1.9	62	82	12	149	34	19	20	25	1.96
35582--35615	17	2.0	17	100	0	68	41	35	5	17	1.74
36580--36623	23	2.0	22	86	4	61	52	11	18	18	1.74
36808--36986	20	8.9	20	74	12	134	40	21	20	17	1.91
36892--36999	40	2.7	39	88	5	162	38	23	21	16	1.92
36866--36986	60	2.0	61	88	9	185	38	23	21	17	1.93
37882--37926	6	7.5	6	100	0	90	0	15	51	33	1.44
38037--38348	20	15.4	20	80	9	303	17	21	24	37	1.94
38037--38429	40	9.8	40	85	6	465	16	20	23	39	1.92
38049--38429	20	18.9	20	77	13	288	17	20	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39425--39868	229	1.9	227	94	0	780	45	6	6	40	1.58
39934--39979	20	2.3	19	89	10	74	54	10	17	17	1.70
40099--40145	20	2.4	19	82	10	67	53	10	17	19	1.72
40108--40150	20	2.3	19	88	11	63	51	11	16	20	1.75
42378--42442	21	3.1	21	80	6	69	40	15	29	15	1.88
42476--42541	33	2.0	33	87	0	96	27	0	48	24	1.51
44336--44384	19	2.6	19	93	0	80	30	2	10	57	1.43
44503--44997	199	2.5	199	99	0	972	37	16	16	30	1.90
45139--45393	41	6.0	41	88	8	311	16	21	24	36	1.94
45139--45393	88	3.0	83	83	10	304	16	21	24	36	1.94
45139--45387	129	1.9	130	86	7	355	16	21	24	36	1.94
45337--45402	19	3.3	19	72	12	69	18	19	21	40	1.91
45485--45529	6	7.5	6	100	0	90	33	51	15	0	1.44
46022--46059	6	6.5	6	96	3	69	0	15	52	31	1.43
46158--46211	21	2.6	21	88	5	74	29	29	20	20	1.98
46248--46353	20	5.2	20	67	12	63	35	26	19	17	1.95
46255--46357	41	2.5	41	93	0	170	37	26	19	16	1.92
46255--46361	21	5.2	21	69	4	92	38	27	18	15	1.91
46499--47379	198	4.4	198	97	0	1654	36	14	16	32	1.89
49621--49670	2	25.0	2	100	0	100	50	0	0	50	1.00
51074--51104	10	3.1	10	95	0	53	32	32	0	35	1.58
51144--51184	18	2.3	18	87	4	57	26	4	2	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51246--51467	111	2.0	111	97	0	417	36	7	11	45	1.68
55601--55682	28	2.8	28	77	15	78	30	1	2	65	1.13
66573--66608	14	2.5	14	90	4	54	77	2	19	0	0.88

Tables:   1

The End!