Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006673.1 Hibiscus syriacus cultivar Beakdansim tig00016535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62634

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--35
2
13.5
2
100
0
54
51
0
0
48
1.00
88--173
41
2.1
42
82
6
104
61
2
5
30
1.32
78--175
43
2.3
44
75
13
105
64
2
6
27
1.28
226--255
2
15.5
2
93
6
53
53
0
0
46
1.00
274--303
12
2.4
13
94
5
53
63
6
6
23
1.43
319--422
22
4.7
22
70
20
56
63
1
5
28
1.28
341--404
13
4.9
13
74
16
53
62
1
7
28
1.32
1173--1231
20
2.9
21
87
7
86
20
27
22
30
1.98
1193--1266
29
2.6
29
89
4
105
18
28
27
25
1.98
1182--1239
20
2.9
20
89
5
82
18
27
24
29
1.98
1173--1259
10
8.8
10
74
18
67
19
27
24
28
1.98
7263--7883
306
2.0
306
98
0
1208
29
14
25
30
1.95
8805--8863
19
3.1
19
95
0
100
16
22
32
28
1.96
8819--8863
9
4.7
10
78
10
58
15
24
33
26
1.95
10559--10584
2
13.0
2
100
0
52
50
0
0
50
1.00
11023--11125
37
2.9
36
83
2
136
30
15
14
39
1.87
11023--11122
35
2.8
35
86
3
128
30
16
14
40
1.87
11848--13832
106
18.9
106
88
2
2776
23
18
23
34
1.96
14541--14617
22
3.5
22
85
0
109
22
14
25
37
1.92
15209--15251
22
1.9
22
86
13
61
2
11
6
79
1.02
15232--15270
11
3.4
11
89
7
51
0
15
5
79
0.90
15232--15276
12
3.4
14
76
17
51
0
15
4
80
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19924--19974
26
1.9
27
92
4
86
68
0
0
31
0.90
20032--20066
2
17.5
2
100
0
70
51
0
0
48
1.00
20265--20330
11
6.1
11
75
10
55
74
0
6
19
1.03
20451--20491
11
3.6
11
87
6
55
65
4
4
24
1.32
20574--20618
12
3.7
12
81
3
54
66
0
4
28
1.11
21174--21278
37
2.8
37
86
0
147
29
14
15
40
1.86
26286--26369
40
2.1
39
84
6
107
23
15
22
38
1.92
27768--29377
6
272.8
6
94
5
2885
32
0
17
50
1.46
27769--29377
4
403.0
4
68
0
740
33
0
16
50
1.46
39507--39869
46
8.0
46
88
2
495
43
11
22
22
1.85
39503--40113
138
4.3
137
80
10
667
43
11
22
22
1.84
39876--40051
26
7.5
24
68
21
97
44
12
21
21
1.84
39816--40113
46
6.6
46
87
2
374
43
11
23
22
1.85
39507--40053
20
24.0
25
69
21
207
43
11
22
22
1.85
44897--44923
13
2.1
13
100
0
54
62
0
29
7
1.22
58451--58832
26
16.7
20
70
22
147
43
10
23
22
1.83
58439--58691
46
5.5
46
92
0
425
45
9
22
22
1.80
58563--58811
118
2.1
118
91
1
410
44
9
22
22
1.82
58517--58879
164
2.2
162
88
2
528
44
11
22
22
1.84
58681--58852
46
3.7
46
88
3
247
43
11
23
22
1.86
58563--58883
118
2.7
115
85
8
330
43
10
22
22
1.84
62066--62152
2
48.5
2
71
21
68
50
1
0
48
1.08

Tables:   1

The End!