Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006674.1 Hibiscus syriacus cultivar Beakdansim tig00016543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97791

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2312--2507
73
2.6
75
87
4
263
20
24
31
23
1.98
3612--3655
18
2.4
18
85
11
63
13
22
29
34
1.93
5384--5508
31
3.9
31
72
13
110
20
22
20
36
1.96
6802--6869
32
2.1
32
86
0
91
23
30
11
33
1.91
7215--7297
21
4.0
21
90
1
114
18
30
36
15
1.92
7216--7298
41
2.0
42
88
6
125
16
30
37
15
1.90
9595--9664
34
2.1
32
84
5
86
22
28
14
34
1.93
10011--10068
19
3.0
19
82
12
73
20
25
32
20
1.97
11136--13622
974
2.6
950
83
5
3043
32
18
12
36
1.88
13923--13947
2
12.5
2
100
0
50
52
0
0
48
1.00
17384--17419
2
18.0
2
100
0
72
0
50
0
50
1.00
20535--20568
16
2.1
16
100
0
68
17
20
11
50
1.77
22186--22222
15
2.4
16
86
13
51
59
5
2
32
1.34
22343--22385
21
2.0
21
95
0
77
39
0
11
48
1.40
22570--22627
29
2.0
29
86
6
82
27
8
29
34
1.87
32175--32205
15
2.1
15
100
0
62
25
19
16
38
1.92
35000--35085
31
2.7
32
85
1
120
60
9
12
17
1.58
41937--41988
8
6.1
9
73
13
56
63
1
1
32
1.16
41939--41995
16
3.5
16
88
4
78
63
1
1
33
1.15
43450--43501
17
3.1
17
100
0
104
13
28
23
34
1.92
44794--45049
102
2.5
102
78
3
230
29
23
18
28
1.97
47045--47102
12
4.8
12
83
12
82
31
0
5
63
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47037--47103
24
2.8
24
86
4
100
31
0
5
62
1.19
47179--47232
19
2.9
19
78
10
58
48
1
3
46
1.30
47199--47243
19
2.4
19
80
0
54
51
0
4
44
1.21
51677--51831
77
2.0
77
100
0
310
33
18
21
25
1.97
52985--53010
13
2.0
13
100
0
52
46
0
15
38
1.46
53324--53735
135
3.0
135
94
2
695
46
9
7
36
1.64
55179--55259
3
27.0
3
76
14
69
59
0
1
39
1.05
55414--55898
76
6.4
76
95
0
837
35
21
19
23
1.96
56572--56648
22
3.5
22
89
5
120
41
12
11
33
1.80
57796--57968
75
2.3
76
80
7
192
31
20
14
34
1.92
58838--58872
4
8.8
4
100
0
70
0
0
22
77
0.78
61473--61526
21
2.5
22
76
8
58
55
7
20
16
1.65
69629--69710
21
3.9
21
78
7
76
25
36
23
14
1.93
71653--71686
17
2.0
17
88
0
50
14
0
32
52
1.42
73580--73605
13
2.0
13
100
0
52
46
0
15
38
1.46
73927--74337
135
3.0
135
93
2
693
46
9
7
36
1.64
75778--75858
3
27.0
3
77
14
69
59
1
0
39
1.05
80332--80581
94
2.7
93
81
2
299
28
25
22
24
1.99
89313--89359
13
3.6
13
82
0
58
70
12
2
14
1.26
89313--89385
26
2.8
26
79
8
78
68
10
2
17
1.31
91582--91615
9
3.9
9
84
7
52
61
2
0
35
1.11
91578--91622
17
2.8
16
90
6
72
64
2
0
33
1.06

Tables:   1

The End!