Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006675.1 Hibiscus syriacus cultivar Beakdansim tig00016544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123304

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1728--1757
12
2.5
12
94
0
51
13
16
40
30
1.87
11981--12025
2
22.5
2
100
0
90
48
0
0
51
1.00
12542--12587
18
2.5
18
89
10
67
0
32
23
43
1.54
12552--12602
18
2.8
19
85
5
52
1
27
25
45
1.64
14108--14167
23
2.7
21
85
12
84
20
28
30
21
1.98
14120--14179
23
2.7
23
92
2
95
18
26
31
23
1.97
21986--22041
19
3.0
18
70
17
51
32
21
5
41
1.76
28566--29106
229
2.3
228
81
6
644
36
17
10
35
1.84
28536--29106
77
7.4
77
84
4
661
36
17
10
35
1.85
29234--29276
14
2.9
15
82
10
52
25
9
0
65
1.22
30751--30924
34
5.3
34
66
21
109
45
8
4
41
1.54
34413--34477
34
1.9
34
84
12
89
46
7
4
41
1.53
35784--35896
10
11.8
9
73
12
82
17
26
27
28
1.98
35804--35900
19
5.1
19
84
10
126
17
26
28
26
1.98
35785--35889
29
3.6
28
84
6
120
17
26
26
29
1.97
35899--35956
5
10.8
5
78
14
62
18
51
22
6
1.70
35834--35913
38
2.1
38
81
9
92
17
32
28
21
1.96
35899--35963
22
3.0
22
100
0
130
18
49
23
9
1.76
43127--43239
10
11.8
9
75
12
91
16
26
28
28
1.97
43147--43243
19
5.1
19
86
10
135
16
26
29
26
1.97
43128--43232
29
3.6
28
85
6
129
16
26
27
29
1.97
43242--43299
5
10.8
5
78
14
62
18
51
22
6
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43177--43256
38
2.1
38
83
4
99
16
32
30
21
1.95
43242--43306
22
3.0
22
100
0
130
18
49
23
9
1.76
47776--47841
27
2.5
26
73
11
62
46
19
15
18
1.83
48733--48912
60
3.0
59
76
8
175
22
15
21
40
1.91
50363--50401
19
2.1
19
100
0
78
25
10
25
38
1.87
50695--50731
18
2.0
19
89
5
58
5
29
8
56
1.51
54733--54763
15
2.1
15
100
0
62
32
0
0
67
0.91
60295--60344
15
3.1
16
75
11
57
36
6
12
46
1.66
68902--69067
85
2.0
84
96
1
305
32
4
25
37
1.75
69646--69705
2
30.0
2
100
0
120
50
0
0
50
1.00
70361--70399
21
1.9
21
84
5
53
43
7
5
43
1.55
74199--74250
19
2.8
18
75
11
52
59
7
1
30
1.36
75467--75513
12
4.0
12
83
5
69
38
31
10
19
1.86
75468--75512
23
2.0
23
95
0
81
37
31
11
20
1.87
79927--79978
19
2.8
18
75
11
52
59
7
1
30
1.36
81138--81184
18
2.7
18
83
3
60
27
27
8
36
1.86
88690--88735
23
2.0
23
91
8
76
65
0
13
21
1.26
90382--90414
16
2.1
16
94
0
57
42
21
12
24
1.86
103316--103361
21
2.1
22
88
11
69
41
2
4
52
1.33
103514--103553
21
1.9
21
84
0
53
50
5
0
45
1.23
112741--112777
16
2.2
17
90
4
58
62
8
0
29
1.24
122920--123058
72
1.9
73
79
7
158
33
22
20
24
1.97

Tables:   1

The End!