Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006676.1 Hibiscus syriacus cultivar Beakdansim tig00016554_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89846

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
231--264
16
2.0
18
88
11
54
76
2
20
0
0.92
14915--14960
22
2.1
22
83
0
56
32
15
23
28
1.95
15620--15672
22
2.4
22
84
6
63
32
16
26
24
1.97
16252--16286
16
2.2
16
90
10
54
65
0
2
31
1.07
16668--16697
2
15.5
2
93
6
53
46
0
0
53
1.00
16695--16747
22
2.4
22
76
17
56
39
0
1
58
1.09
16716--16759
22
2.0
23
86
8
65
47
2
0
50
1.13
16784--16821
19
2.0
19
89
0
58
52
0
2
44
1.14
19092--19126
18
1.9
18
88
0
52
48
5
2
42
1.41
19188--19228
19
2.2
19
86
0
55
36
4
0
58
1.20
20159--20186
14
2.0
14
100
0
56
28
7
7
57
1.52
22229--22293
30
2.1
30
82
8
76
46
3
6
44
1.44
23865--24013
60
2.5
60
84
0
172
40
16
8
34
1.79
24384--24452
31
2.3
31
89
2
113
33
13
14
39
1.85
26364--26448
37
2.3
37
86
6
120
42
20
4
32
1.72
30936--31055
35
3.3
36
89
5
181
43
20
5
31
1.73
30987--31047
21
3.2
21
65
29
64
42
21
4
31
1.74
30938--31082
35
4.1
36
82
11
133
41
18
6
33
1.76
31425--31486
32
1.9
32
90
0
97
33
1
12
51
1.50
42667--42753
16
5.3
16
73
20
72
35
2
0
62
1.08
42674--42740
26
2.6
26
81
11
75
35
1
0
62
1.04
42672--42762
13
6.9
13
68
24
57
35
2
0
62
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53805--54047
44
5.8
42
77
13
182
25
17
6
50
1.69
53836--54048
85
2.5
87
81
10
233
25
17
5
50
1.68
53813--54074
129
2.1
125
82
9
309
27
17
6
49
1.69
53836--54119
129
2.2
130
80
9
305
26
16
5
51
1.67
53836--54106
44
6.2
44
78
8
250
26
16
5
50
1.68
54174--54217
22
2.0
22
100
0
88
27
36
18
18
1.94
57238--57277
21
1.9
21
89
0
62
35
17
17
30
1.93
57238--57285
21
2.3
21
85
0
60
35
18
16
29
1.93
58186--58803
308
2.0
308
99
0
1227
34
11
18
34
1.88
59278--59502
64
3.5
64
81
8
239
33
18
19
28
1.96
60158--60295
15
9.2
15
93
0
240
13
22
33
30
1.93
60158--60295
30
4.6
30
100
0
276
13
22
33
30
1.93
63252--63329
19
3.8
21
77
17
74
23
16
32
28
1.96
63252--63320
23
3.3
20
81
13
77
21
15
34
27
1.94
66974--67020
21
2.2
21
96
0
85
14
10
36
38
1.81
80313--80349
18
2.1
18
100
0
74
40
5
5
48
1.49
81321--81415
42
2.3
42
83
0
109
12
23
26
37
1.90
81351--81432
42
2.0
42
87
0
119
15
19
24
40
1.91
86441--86509
19
3.7
19
96
3
124
31
17
30
20
1.95
86908--86955
16
2.8
18
81
12
57
33
6
20
39
1.78

Tables:   1

The End!