genome.fa.s6677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006677.1 Hibiscus syriacus cultivar Beakdansim tig00016556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59918

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3146--3250	37	2.8	37	88	0	156	40	15	14	30	1.87
3788--3841	2	28.5	2	81	10	69	42	0	0	57	0.98
3793--3875	14	5.8	14	74	22	59	42	1	0	56	1.07
4031--4071	20	2.0	22	85	9	59	31	4	0	63	1.15
4125--4160	17	2.1	17	89	0	54	19	8	0	72	1.10
5111--5146	18	1.9	19	88	5	56	8	25	0	66	1.19
8511--8551	17	2.4	17	84	15	50	82	4	12	0	0.81
8507--8581	31	2.5	29	77	12	80	77	6	12	4	1.10
9357--9433	22	3.5	22	90	0	127	38	27	12	20	1.89
10243--11918	106	15.9	106	91	1	2568	33	24	18	22	1.96
12651--12755	37	2.8	37	85	0	147	39	15	15	30	1.88
13256--13319	19	3.3	19	70	21	51	28	1	1	68	1.07
13262--13329	22	3.0	22	76	16	68	30	1	1	66	1.10
13287--13325	19	2.1	19	85	9	53	33	2	0	64	1.08
13681--13716	17	2.2	16	90	9	56	13	8	0	77	0.98
17693--17740	2	24.0	2	100	0	96	50	0	0	50	1.00
30981--31026	19	2.4	19	96	0	83	30	17	19	32	1.95
33736--33836	45	2.3	42	81	5	112	16	40	18	23	1.91
39985--40062	31	2.5	31	85	2	104	37	16	20	25	1.93
48120--48232	20	5.6	20	82	3	136	40	17	23	17	1.91
48221--48335	20	5.7	19	74	14	79	34	24	16	24	1.95
48218--48295	41	1.9	41	84	5	104	38	23	15	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48503--48546	22	2.0	22	100	0	88	22	45	13	18	1.84
50165--50208	17	2.5	18	85	3	63	27	43	15	13	1.85
50688--50733	20	2.3	20	88	0	65	36	26	21	15	1.93
50743--50832	14	5.9	14	73	19	81	47	22	17	12	1.80
50727--50849	32	3.8	32	93	2	201	47	21	17	13	1.81
50866--50923	14	3.9	14	75	16	62	8	15	24	51	1.71
50861--50939	32	2.4	33	87	2	124	10	17	22	49	1.77
50912--50978	19	3.5	19	83	4	89	14	23	23	37	1.93
50924--50978	20	2.8	19	89	5	83	16	25	23	34	1.95
51869--51904	14	2.6	14	90	0	54	30	0	22	47	1.52
51992--52093	19	5.4	19	95	0	168	44	18	21	15	1.87
52096--52153	20	2.9	20	89	0	89	18	22	20	37	1.94
53210--53263	24	2.2	24	90	0	81	24	16	20	38	1.92
53438--53462	12	2.1	12	100	0	50	72	0	28	0	0.86
55750--55880	19	7.7	19	66	23	94	42	19	22	14	1.88
55750--55876	33	3.8	33	88	4	202	42	19	22	14	1.88
55751--55883	66	2.0	66	97	0	248	41	19	22	16	1.90
56039--56075	14	2.6	14	86	0	56	45	21	0	32	1.52
57423--57489	21	3.2	21	68	4	55	19	20	35	23	1.95
57423--57545	42	2.9	41	80	7	113	22	17	36	22	1.95
58205--58272	21	3.2	21	64	15	59	16	13	39	30	1.86
58205--58301	42	2.3	42	100	0	194	16	14	38	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58226--58293	21	3.2	21	64	15	59	17	13	39	29	1.88
59565--59744	19	9.8	19	74	14	119	44	22	21	11	1.84
59590--59688	33	3.0	33	87	1	135	39	27	22	11	1.88
59660--59749	19	4.7	19	91	2	144	46	23	18	11	1.81
59660--59744	39	2.2	38	93	2	143	48	23	17	10	1.78
59745--59787	18	2.4	18	92	0	68	9	16	27	46	1.77

Tables:   1

The End!