Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006678.1 Hibiscus syriacus cultivar Beakdansim tig00016563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1086949
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 2 of 5
Found at i:173807 original size:23 final size:23
Alignment explanation
Indices: 173759--173808 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
173749 TTTTTTTCGT
*
173759 AAAACAATTAAATATTATTTTTA
1 AAAACAATTAAATATTATTTTGA
173782 AAAACAATTATAACT-TTA-TTTGA
1 AAAACAATTA-AA-TATTATTTTGA
173805 AAAA
1 AAAA
173809 ATTGGTGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 18 0.75
24 5 0.21
25 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (23 bp):
AAAACAATTAAATATTATTTTGA
Found at i:173808 original size:24 final size:23
Alignment explanation
Indices: 173759--173809 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
173749 TTTTTTTCGT
**
173759 AAAACAATTAAATATTATTTTTA
1 AAAACAATTAAATATTATTTGAA
173782 AAAACAATTATAACT-TTATTTGAA
1 AAAACAATTA-AA-TATTATTTGAA
173806 AAAA
1 AAAA
173810 TTGGTGGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 10 0.42
24 13 0.54
25 1 0.04
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (23 bp):
AAAACAATTAAATATTATTTGAA
Found at i:180693 original size:22 final size:22
Alignment explanation
Indices: 180663--180704 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
180653 CCATGAGTTG
180663 ATATAGTAA-AATGAAATATTAT
1 ATATAGTAATAAT-AAATATTAT
*
180685 ATATCGTAATAATAAATATT
1 ATATAGTAATAATAAATATT
180705 TGGTACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.38
Consensus pattern (22 bp):
ATATAGTAATAATAAATATTAT
Found at i:190143 original size:16 final size:16
Alignment explanation
Indices: 190107--190143 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
190097 TCTTATTTTT
190107 TTATAATATATATATA
1 TTATAATATATATATA
*
190123 -T-TAATATCTATATA
1 TTATAATATATATATA
190137 TTATAAT
1 TTATAAT
190144 TAAATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
14 12 0.67
15 2 0.11
16 4 0.22
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
TTATAATATATATATA
Found at i:190592 original size:3 final size:3
Alignment explanation
Indices: 190584--190611 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
190574 ATAGTTCTAC
190584 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
190612 TTTGGTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:192766 original size:50 final size:50
Alignment explanation
Indices: 192680--192774 Score: 118
Period size: 50 Copynumber: 1.9 Consensus size: 50
192670 AATTTTAATA
*** * * *
192680 AAAAAATATATTTTATTGGGACTCGTCACTTTGAGGTAACGAGTTTGAAT
1 AAAAAATATATTTTATTCAAACTCATCACCTCGAGGTAACGAGTTTGAAT
* *
192730 AAAAAATATTTTTTATTCAAACTCATCACCTCGAGGTGACGAGTT
1 AAAAAATATATTTTATTCAAACTCATCACCTCGAGGTAACGAGTT
192775 CCAGATTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 37 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.35
Consensus pattern (50 bp):
AAAAAATATATTTTATTCAAACTCATCACCTCGAGGTAACGAGTTTGAAT
Found at i:193518 original size:21 final size:21
Alignment explanation
Indices: 193493--193535 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
193483 TTCTAAACCC
*
193493 TAAATTCTAAAATACTTTAAT
1 TAAATTCTAAAATACTTCAAT
193514 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
193535 T
1 T
193536 TAAGGTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAATTCTAAAATACTTCAAT
Found at i:193690 original size:16 final size:18
Alignment explanation
Indices: 193658--193691 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
193648 TATTAATGTA
193658 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
193676 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
193692 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:194359 original size:130 final size:129
Alignment explanation
Indices: 194156--194402 Score: 404
Period size: 130 Copynumber: 1.9 Consensus size: 129
194146 AATTTTCTTC
* * **
194156 TAATTAGGAGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAATAACACATATCATGATCATGTGCAAACACATGTCAGAT
*
194221 CCTGATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATT-AATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * * *
194286 TAATTAGGTGGTAACACGTGTCACCAATGACACGTGTCATGATCATGTGCAAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAATAACACATATCATGATCATGTGCAAACACATGTCAGAT
194351 CCTAATTAAATGATTAATTTATTAATTTTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAATTTTATTTAATTTAGGACCAAATTGAT
194403 TATATAAATA
Statistics
Matches: 108, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
129 29 0.27
130 79 0.73
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (129 bp):
TAATTAGGAGGTAACACGTGTCACCAATAACACATATCATGATCATGTGCAAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:198216 original size:36 final size:33
Alignment explanation
Indices: 198179--198245 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
198169 TGAAGAAGAA
198179 GAAGAAGAAAACTTCCCATTGAGATGAACAATG
1 GAAGAAGAAAACTTCCCATTGAGATGAACAATG
198212 GAAGAAGAAAACTTCCCATTGAGATGAACAATG
1 GAAGAAGAAAACTTCCCATTGAGATGAACAATG
198245 G
1 G
198246 GTTGAAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (33 bp):
GAAGAAGAAAACTTCCCATTGAGATGAACAATG
Found at i:198290 original size:64 final size:64
Alignment explanation
Indices: 198212--198332 Score: 224
Period size: 64 Copynumber: 1.9 Consensus size: 64
198202 ATGAACAATG
198212 GAAGAAGAAAACTTCCCATTGAGATGAACAATGGGTTGAAAATAATGTGTTCATTGAAGAAGAA
1 GAAGAAGAAAACTTCCCATTGAGATGAACAATGGGTTGAAAATAATGTGTTCATTGAAGAAGAA
* *
198276 GAAGAAGAAGACTTCCCATTGAGATGAACAGTGGGTTGAAAATAATGTGTTCATTGA
1 GAAGAAGAAAACTTCCCATTGAGATGAACAATGGGTTGAAAATAATGTGTTCATTGA
198333 TGTTTTTTCT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (64 bp):
GAAGAAGAAAACTTCCCATTGAGATGAACAATGGGTTGAAAATAATGTGTTCATTGAAGAAGAA
Found at i:201951 original size:35 final size:35
Alignment explanation
Indices: 201910--201989 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
201900 AATATAGTCA
* *
201910 TCAATTACATTTTAAACC-CTAAAATCTAAAATACT
1 TCAATTACATTCTAAACCTC-AAAATCCAAAATACT
*
201945 TCAATTACATTCTAAACCTCAAATTCCAAAATACT
1 TCAATTACATTCTAAACCTCAAAATCCAAAATACT
201980 TCAATTACAT
1 TCAATTACAT
201990 GCCCAACCCC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 40 0.98
36 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.34
Consensus pattern (35 bp):
TCAATTACATTCTAAACCTCAAAATCCAAAATACT
Found at i:202005 original size:35 final size:35
Alignment explanation
Indices: 201923--202005 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 35
201913 ATTACATTTT
* * * * *
201923 AAACCCTAAAATCTAAAATACTTCAATTACATTCT
1 AAACCCCAAATTCCAAAATACTTCAATTACATGCC
*
201958 AAACCTCAAATTCCAAAATACTTCAATTACATGCC
1 AAACCCCAAATTCCAAAATACTTCAATTACATGCC
* *
201993 CAACCCCGAATTC
1 AAACCCCAAATTC
202006 ATAACCCATT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.42, C:0.29, G:0.02, T:0.27
Consensus pattern (35 bp):
AAACCCCAAATTCCAAAATACTTCAATTACATGCC
Found at i:203770 original size:34 final size:35
Alignment explanation
Indices: 203730--203808 Score: 124
Period size: 35 Copynumber: 2.3 Consensus size: 35
203720 AATACGATCA
* *
203730 TCAATTACATTTTAAACC-CAAAATCCAAAATGCT
1 TCAATTACATTATAAACCTCAAAATCCAAAATACT
*
203764 TCAATTACATTATAAACCTCAAATTCCAAAATACT
1 TCAATTACATTATAAACCTCAAAATCCAAAATACT
203799 TCAATTACAT
1 TCAATTACAT
203809 GTCTAACCCC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 17 0.41
35 24 0.59
ACGTcount: A:0.44, C:0.23, G:0.01, T:0.32
Consensus pattern (35 bp):
TCAATTACATTATAAACCTCAAAATCCAAAATACT
Found at i:203822 original size:35 final size:34
Alignment explanation
Indices: 203730--203824 Score: 118
Period size: 35 Copynumber: 2.7 Consensus size: 34
203720 AATACGATCA
* * * *
203730 TCAATTACATTTTAAACCCAAAATCCAAAATGCT
1 TCAATTACATTATAACCCCAAATTCCAAAATACT
*
203764 TCAATTACATTATAAACCTCAAATTCCAAAATACT
1 TCAATTACATTAT-AACCCCAAATTCCAAAATACT
*
203799 TCAATTACATGTCTAACCCCAAATTC
1 TCAATTACAT-TATAACCCCAAATTC
203825 ATAACCCATT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 12 0.23
35 38 0.73
36 2 0.04
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (34 bp):
TCAATTACATTATAACCCCAAATTCCAAAATACT
Found at i:204641 original size:36 final size:35
Alignment explanation
Indices: 204601--204697 Score: 113
Period size: 35 Copynumber: 2.7 Consensus size: 35
204591 AATGAATTAT
** * * *
204601 GAATTTGGGGTTGGGCATGTAATTGAAGTATTTTTG
1 GAATTTGGGGTTTAGAATGTAATTGAAGCA-TTTTA
* *
204637 GAATTTGAGGTTTAGAAAGTAATTGAAGCATTTTA
1 GAATTTGGGGTTTAGAATGTAATTGAAGCATTTTA
*
204672 GAATTTAGGGTTTAGAATGTAATTGA
1 GAATTTGGGGTTTAGAATGTAATTGA
204698 TGACTATTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 27 0.53
36 24 0.47
ACGTcount: A:0.31, C:0.02, G:0.28, T:0.39
Consensus pattern (35 bp):
GAATTTGGGGTTTAGAATGTAATTGAAGCATTTTA
Found at i:209656 original size:29 final size:29
Alignment explanation
Indices: 209618--209687 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
209608 GTTGTATTGT
* *
209618 TTATATCACTGAACTTTTAATT-TTGTCAA
1 TTATACCACTGAAATTTTAATTGTT-TCAA
* *
209647 TTATAGCACT-AAATTTTGATTGTTTCAA
1 TTATACCACTGAAATTTTAATTGTTTCAA
209675 TTATACCACTGAA
1 TTATACCACTGAA
209688 TTATTAAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 22 0.63
29 13 0.37
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (29 bp):
TTATACCACTGAAATTTTAATTGTTTCAA
Found at i:211687 original size:41 final size:41
Alignment explanation
Indices: 211626--211728 Score: 197
Period size: 41 Copynumber: 2.5 Consensus size: 41
211616 CAGTTCAGGA
211626 TTTCGAGTTCGAGTCGAGCTTGAAAATTTTAAGCTCGCGAGT
1 TTTCGAG-TCGAGTCGAGCTTGAAAATTTTAAGCTCGCGAGT
211668 TTTCGAGTCGAGTCGAGCTTGAAAATTTTAAGCTCGCGAGT
1 TTTCGAGTCGAGTCGAGCTTGAAAATTTTAAGCTCGCGAGT
211709 TTTCGAGTCGAGTCGAGCTT
1 TTTCGAGTCGAGTCGAGCTT
211729 TATTTCAGAG
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 54 0.89
42 7 0.11
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.33
Consensus pattern (41 bp):
TTTCGAGTCGAGTCGAGCTTGAAAATTTTAAGCTCGCGAGT
Found at i:213032 original size:6 final size:7
Alignment explanation
Indices: 213015--213042 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
213005 TTGGCTAACT
213015 TTTTTTC
1 TTTTTTC
213022 TTTTTTC
1 TTTTTTC
213029 TTTTTTC
1 TTTTTTC
213036 TTTTTTC
1 TTTTTTC
213043 AAGGATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Found at i:221455 original size:18 final size:17
Alignment explanation
Indices: 221434--221479 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
221424 GAATTAATCG
*
221434 ATTTTTTTAAAATTTCAA
1 ATTTTTATAAAATTT-AA
*
221452 ATTTATATAAAATTTAA
1 ATTTTTATAAAATTTAA
221469 ATATTTTATAA
1 AT-TTTTATAA
221480 TTCAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTTTTATAAAATTTAA
Found at i:221510 original size:20 final size:20
Alignment explanation
Indices: 221462--221522 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
221452 ATTTATATAA
*
221462 AATTTAAATATTTTATAATT
1 AATTTAAATAATTTATAATT
** *
221482 CAA-AAAAATAGTTTATAATT
1 -AATTTAAATAATTTATAATT
*
221502 AATTTAAATAATATATAATT
1 AATTTAAATAATTTATAATT
221522 A
1 A
221523 TAAAATAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
AATTTAAATAATTTATAATT
Found at i:221778 original size:185 final size:184
Alignment explanation
Indices: 221470--221837 Score: 603
Period size: 185 Copynumber: 2.0 Consensus size: 184
221460 AAAATTTAAA
* * *
221470 TATTTTATAATTCAAAAAAATAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAAT
1 TATTTTATAATTCAAAAAAACAGTTTACAATTAATTCAAATAATATATAATTATAAAATAAAAAT
** * **
221535 TTACATAATTTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGGATCTTAAATTATT
66 TTACATAAAATTTTTAATTAATTAATATTGATTTAGGTGTAAAAGTTATTAAATCTTAAATTATT
221600 AATTGGGTTTTAAATAGTTTGGG-TAGAACCCATATGTTATATATAATATATTTT
131 AATTGGGTTTTAAATAGTTTGGGCT-GAACCCATATGTTATATATAATATATTTT
* * *
221654 TATTTTTTATTTCAGAAAAACAGTTTACAATTAATTCAAATAATATATAATTATAAAATAAAAAT
1 TATTTTATAATTCAAAAAAACAGTTTACAATTAATTCAAATAATATATAATTATAAAATAAAAA-
*
221719 TTTATATAAAATTTTTAATTAATTAATATTGATTTAGGTGTAAAAGTTATTAAATCTTAAATTAT
65 TTTACATAAAATTTTTAATTAATTAATATTGATTTAGGTGTAAAAGTTATTAAATCTTAAATTAT
221784 TAATTGGGTTTTAAATAGTTTGGGCTGAACCCATATGTTATATATAATATATTT
130 TAATTGGGTTTTAAATAGTTTGGGCTGAACCCATATGTTATATATAATATATTT
221838 AATATTTAAA
Statistics
Matches: 170, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
184 58 0.34
185 111 0.65
186 1 0.01
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (184 bp):
TATTTTATAATTCAAAAAAACAGTTTACAATTAATTCAAATAATATATAATTATAAAATAAAAAT
TTACATAAAATTTTTAATTAATTAATATTGATTTAGGTGTAAAAGTTATTAAATCTTAAATTATT
AATTGGGTTTTAAATAGTTTGGGCTGAACCCATATGTTATATATAATATATTTT
Found at i:222071 original size:2 final size:2
Alignment explanation
Indices: 222064--222095 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
222054 ACTATTAATG
222064 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
222096 TCTATGTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:228149 original size:14 final size:14
Alignment explanation
Indices: 228130--228189 Score: 102
Period size: 14 Copynumber: 4.3 Consensus size: 14
228120 CGTTCGTGAA
* *
228130 CGTTCGATTATATT
1 CGTTCGGTTATGTT
228144 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
228158 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
228172 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
228186 CGTT
1 CGTT
228190 TATGTTCATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 44 1.00
ACGTcount: A:0.10, C:0.15, G:0.25, T:0.50
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:228206 original size:24 final size:24
Alignment explanation
Indices: 228159--228209 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
228149 GGTTATGTTC
* *
228159 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
* *
228183 GTTCGTTTATGTTCATTCATTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
228207 GTT
1 GTT
228210 TAACCCAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.55
Consensus pattern (24 bp):
GTTCGGTTATGTTCATTCAGTTAT
Found at i:238411 original size:12 final size:12
Alignment explanation
Indices: 238390--238434 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
238380 TGTTGAGCTT
238390 GAATCGAGCTCA
1 GAATCGAGCTCA
* *
238402 GAACCGAGCT-T
1 GAATCGAGCTCA
238413 GAATCGAGCTCA
1 GAATCGAGCTCA
238425 GAATCGAGCT
1 GAATCGAGCT
238435 TCAATCGAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 9 0.32
12 19 0.68
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (12 bp):
GAATCGAGCTCA
Found at i:238414 original size:23 final size:23
Alignment explanation
Indices: 238384--238445 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
238374 GGGCAATGTT
238384 GAGCTTGAATCGAGCTCAGAACC
1 GAGCTTGAATCGAGCTCAGAACC
*
238407 GAGCTTGAATCGAGCTCAGAATC
1 GAGCTTGAATCGAGCTCAGAACC
*
238430 GAGCTTCAATCGAGCT
1 GAGCTTGAATCGAGCT
238446 TGAGTCTCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (23 bp):
GAGCTTGAATCGAGCTCAGAACC
Found at i:238422 original size:11 final size:11
Alignment explanation
Indices: 238384--238448 Score: 76
Period size: 11 Copynumber: 5.7 Consensus size: 11
238374 GGGCAATGTT
238384 GAGCTTGAATC
1 GAGCTTGAATC
* *
238395 GAGCTCAGAACC
1 GAGCT-TGAATC
238407 GAGCTTGAATC
1 GAGCTTGAATC
*
238418 GAGCTCAGAATC
1 GAGCT-TGAATC
*
238430 GAGCTTCAATC
1 GAGCTTGAATC
238441 GAGCTTGA
1 GAGCTTGA
238449 GTCTCGAGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
11 25 0.57
12 19 0.43
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (11 bp):
GAGCTTGAATC
Found at i:238723 original size:16 final size:16
Alignment explanation
Indices: 238702--238732 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
238692 CAAAAAAAAT
238702 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
238718 TGTTCGTTTATGTTC
1 TGTTCGTTTATGTTC
238733 TTTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.13, G:0.23, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:239769 original size:18 final size:19
Alignment explanation
Indices: 239734--239769 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
239724 CACGGAATGT
239734 AAGATTACCAGTGGAATAA
1 AAGATTACCAGTGGAATAA
*
239753 AAGATTATCAG-GGAATA
1 AAGATTACCAGTGGAATA
239770 GGATTACTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.47, C:0.08, G:0.22, T:0.22
Consensus pattern (19 bp):
AAGATTACCAGTGGAATAA
Found at i:258778 original size:16 final size:15
Alignment explanation
Indices: 258745--258775 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
258735 TTTCTAACGT
*
258745 ATTTTTTTATTTATA
1 ATTTTTTTATTTAAA
258760 ATTTTTTTATTTAAA
1 ATTTTTTTATTTAAA
258775 A
1 A
258776 ATTATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTTTATTTAAA
Found at i:261385 original size:20 final size:20
Alignment explanation
Indices: 261348--261385 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
261338 TTAATGGGGT
*
261348 TTTTGTTTTGTCTTCAATAC
1 TTTTGTTTTGTCTACAATAC
261368 TTTTGTTTCTG-CTACAAT
1 TTTTGTTT-TGTCTACAAT
261386 TGGTTGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.58
Consensus pattern (20 bp):
TTTTGTTTTGTCTACAATAC
Found at i:269560 original size:19 final size:19
Alignment explanation
Indices: 269532--269586 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
269522 AATATATTTA
269532 AAAACA-ATAAAATAAATG
1 AAAACATATAAAATAAATG
269550 AAAACATATAAAATAAATG
1 AAAACATATAAAATAAATG
*
269569 AAGACATATAAAATAAAT
1 AAAACATATAAAATAAAT
269587 AACTAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
18 6 0.17
19 29 0.83
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.20
Consensus pattern (19 bp):
AAAACATATAAAATAAATG
Found at i:270448 original size:17 final size:17
Alignment explanation
Indices: 270426--270458 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
270416 TACTAGTTTG
*
270426 TTTTTTCTTTTTCTGTA
1 TTTTTTCGTTTTCTGTA
270443 TTTTTTCGTTTTCTGT
1 TTTTTTCGTTTTCTGT
270459 TTCTGTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.12, G:0.09, T:0.76
Consensus pattern (17 bp):
TTTTTTCGTTTTCTGTA
Found at i:271044 original size:15 final size:15
Alignment explanation
Indices: 271011--271062 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
271001 AATAATAATA
* **
271011 ATAATAATAATATTA
1 ATAAAAATAATATGG
*
271026 ATAACAATAATATGG
1 ATAAAAATAATATGG
271041 ATAAAAATAATATGG
1 ATAAAAATAATATGG
271056 ATAAAAA
1 ATAAAAA
271063 ATAGTATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (15 bp):
ATAAAAATAATATGG
Found at i:271052 original size:3 final size:3
Alignment explanation
Indices: 270934--271037 Score: 165
Period size: 3 Copynumber: 34.7 Consensus size: 3
270924 TTAATATATT
270934 TAA T-A TAA TTAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
270979 TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
271027 TAA CAA TAA TA
1 TAA TAA TAA TA
271038 TGGATAAAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
2 2 0.02
3 88 0.95
4 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:271723 original size:225 final size:225
Alignment explanation
Indices: 271340--272029 Score: 954
Period size: 225 Copynumber: 3.0 Consensus size: 225
271330 TCAGATAATA
*
271340 TCAAAC-AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
1 TCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * * * * *
271404 TTTCATTCATGAACTTTCTCTGGCAATA-TTGATCCATCAAATGATGAATTTAAACAAAAAGTTG
66 TCTCATT-ATGAAC-CTCTCTGG-AAAAGTTGATCCATCAAATGATGAATTCAAGCAAAAGGTTG
*
271468 AACAAGTTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCT
128 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCT
* *
271533 TCTCTGGTAATGTTGATCCATCAAATGATGAAT
193 TCTCTGGAAATGATGATCCATCAAATGATGAAT
* * *
271566 TTAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAGATGAGTTCT
1 TCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * * * *
271631 TCTCATTATGAACCTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAAC
66 TCTCATTATGAACCTCTCTGGAAAAGTTGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAAC
* * *
271696 AAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTT
131 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT
* * *
271761 CTGGAAAAGATGATCCACCAAATGATGGAT
196 CTGGAAATGATGATCCATCAAATGATGAAT
*** *
271791 TCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGT
1 TCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGT
* *
271856 TCTTCTCATTATGAA-CTTTACCTGGCAAAGTTGATCCATCAAATGATGAATTCAAGCAAAAGGT
63 TCTTCTCATTATGAACCTCT--CTGGAAAAGTTGATCCATCAAATGATGAATTCAAGCAAAAGGT
271920 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATG
126 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATG
*
271985 AACTCTTCCTCTGGAAATGATGATCCATCAATTTGATGAAT
188 AAC-CTT-CTCTGGAAATGATGATCCATCAA-ATGATGAAT
272026 TCAA
1 TCAA
272030 GTCTTTGCTA
Statistics
Matches: 405, Mismatches: 46, Indels: 17
0.87 0.10 0.04
Matches are distributed among these distances:
224 3 0.01
225 175 0.43
226 11 0.03
227 64 0.16
228 19 0.05
229 81 0.20
232 20 0.05
233 2 0.00
234 20 0.05
235 10 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (225 bp):
TCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACCTCTCTGGAAAAGTTGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAAC
AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT
CTGGAAATGATGATCCATCAAATGATGAAT
Found at i:271919 original size:116 final size:113
Alignment explanation
Indices: 271346--272030 Score: 953
Period size: 113 Copynumber: 6.0 Consensus size: 113
271336 AATATCAAAC
* *
271346 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTTTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
271411 CATGAACTTTCTCTGGCAATA-TTGATCCATCAAATGATGAATTTAAACA
66 -ATGAACTTTCTCTGG-AAAAGATGATCCATCAAATGATGAATTCAAGCA
* *
271460 AAAAGTTGAACAAGTTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * *
271525 ATGAACCTTCTCTGGTAATGTTGATCCATCAAATGATGAATTTAAACA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAAGCA
* *
271573 AAAAGTTGAACAAGTTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * *
271638 ATGAAC-CTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAAGCA
*
271685 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * *
271750 ATGAACTTTTTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAAGCA
*
271798 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTC
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTC
* *
271863 ATTATGAACTTTAC-CTGGCAAAGTTGATCCATCAAATGATGAATTCAAGCA
63 ATTATGAACTTT-CTCTGGAAAAGATGATCCATCAAATGATGAATTCAAGCA
271914 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTC
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTC
* *
271979 ATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAG
63 ATTATGAACT-TT-CTCTGGAAAAGATGATCCATCAA-ATGATGAATTCAAG
272031 TCTTTGCTAA
Statistics
Matches: 526, Mismatches: 36, Indels: 13
0.91 0.06 0.02
Matches are distributed among these distances:
112 100 0.19
113 203 0.39
114 61 0.12
116 128 0.24
117 3 0.01
118 18 0.03
119 13 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAAGCA
Found at i:272719 original size:47 final size:50
Alignment explanation
Indices: 272649--272754 Score: 148
Period size: 52 Copynumber: 2.1 Consensus size: 50
272639 TCTAAATTCA
*
272649 ATGCT-TGATTCTGTCCAA--TCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGATTCTGTCCAACCACAGATAACTCAAAGAACACTTCCAGAAG
272696 ATGCTATG-TTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGATTCTGTCCAACC--A-CAGATAACTCAAAGAACACTTCCAGAAG
272748 ATGCTAT
1 ATGCTAT
272755 TGGCAAATTC
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
47 15 0.29
48 2 0.04
52 35 0.67
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (50 bp):
ATGCTATGATTCTGTCCAACCACAGATAACTCAAAGAACACTTCCAGAAG
Found at i:272747 original size:130 final size:133
Alignment explanation
Indices: 272587--272887 Score: 486
Period size: 135 Copynumber: 2.3 Consensus size: 133
272577 CACTTCTTCG
* * *
272587 GATCAAATAACTCAAATAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATTCAATG
1 GATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATATTCTAAATTCAATG
*
272652 CTT-GATTCTG-T-CCA-ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT-GTTCTGTCC
66 ATTAG-TTCTGCTACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT-TGGTTCTGTCC
272712 AACCA
129 AACCA
272717 GATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATATTCTAAATTCAATG
1 GATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATATTCTAAATTCAATG
*
272782 ATTAGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTGGTTCTGTCT
66 ATTAGTTCTG-CT-ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTGGTTCTGTCC
272847 AACCA
129 AACCA
272852 GATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
1 GATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
272888 TGGTTCTGTC
Statistics
Matches: 159, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
130 69 0.43
131 1 0.01
132 1 0.01
134 4 0.03
135 84 0.53
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (133 bp):
GATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATATTCTAAATTCAATG
ATTAGTTCTGCTACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTGGTTCTGTCCAA
CCA
Found at i:272848 original size:52 final size:52
Alignment explanation
Indices: 272786--272939 Score: 308
Period size: 52 Copynumber: 3.0 Consensus size: 52
272776 TCAATGATTA
272786 GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTG
1 GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTG
272838 GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTG
1 GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTG
272890 GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
1 GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
272940 ATTGGCAAAT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 102 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (52 bp):
GTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTTG
Found at i:273739 original size:19 final size:19
Alignment explanation
Indices: 273717--273753 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
273707 AATAGAAAAG
*
273717 AATAAATTGAATTTCCAAA
1 AATAAATTGAATCTCCAAA
273736 AATAAATTGAATCTCCAA
1 AATAAATTGAATCTCCAA
273754 TAAGTTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (19 bp):
AATAAATTGAATCTCCAAA
Found at i:274107 original size:20 final size:18
Alignment explanation
Indices: 274082--274166 Score: 58
Period size: 17 Copynumber: 4.9 Consensus size: 18
274072 CTTGACCCTC
*
274082 TTTTTTCTTTTTCTATTATT
1 TTTTTTCTTCTTCT-TT-TT
274102 TTTTTTCTTCTTC--TTT
1 TTTTTTCTTCTTCTTTTT
274118 TTTTTTC--C--CTTTTT
1 TTTTTTCTTCTTCTTTTT
* *
274132 TTCTTTCTT-TTCCTTTT
1 TTTTTTCTTCTTCTTTTT
*
274149 TCTTTTCTTCTTTCTTTT
1 TTTTTTCTTC-TTCTTTT
274167 CTTCAAGCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
12 1 0.02
14 10 0.20
16 9 0.18
17 13 0.25
19 6 0.12
20 12 0.24
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTCTTCTTCTTTTT
Found at i:274139 original size:24 final size:23
Alignment explanation
Indices: 274101--274169 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 23
274091 TTTCTATTAT
274101 TTTTTTTCTTCTTCTTTT-TTTTTCCC
1 TTTTTTTC-T-TTCTTTTCTTTTT--C
274127 TTTTTTTCTTTCTTTTCCTTTTTC
1 TTTTTTTCTTTCTTTT-CTTTTTC
*
274151 TTTTCTTCTTTCTTTTCTT
1 TTTTTTTCTTTCTTTTCTT
274170 CAAGCATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
23 3 0.08
24 23 0.57
25 1 0.03
26 13 0.32
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTTTCTTTCTTTTCTTTTTC
Found at i:285596 original size:19 final size:19
Alignment explanation
Indices: 285568--285622 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
285558 AATATATTTA
285568 AAAACA-ATAAAATAAATG
1 AAAACATATAAAATAAATG
285586 AAAACATATAAAATAAATG
1 AAAACATATAAAATAAATG
*
285605 AAGACATATAAAATAAAT
1 AAAACATATAAAATAAAT
285623 AACTAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
18 6 0.17
19 29 0.83
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.20
Consensus pattern (19 bp):
AAAACATATAAAATAAATG
Found at i:287074 original size:15 final size:15
Alignment explanation
Indices: 287041--287092 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
287031 AATAATAATA
* **
287041 ATAATAATAATATTA
1 ATAAAAATAATATGG
*
287056 ATAACAATAATATGG
1 ATAAAAATAATATGG
287071 ATAAAAATAATATGG
1 ATAAAAATAATATGG
287086 ATAAAAA
1 ATAAAAA
287093 ATAGTATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (15 bp):
ATAAAAATAATATGG
Found at i:287082 original size:3 final size:3
Alignment explanation
Indices: 286985--287067 Score: 139
Period size: 3 Copynumber: 27.7 Consensus size: 3
286975 TAATATAAAT
*
286985 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
287033 TAA TAA TAA TAA TAA TAA TAT TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
287068 TGGATAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:288477 original size:67 final size:67
Alignment explanation
Indices: 288369--288500 Score: 221
Period size: 67 Copynumber: 2.0 Consensus size: 67
288359 TACATTCTTC
288369 GACTCTTTCCGTATTTCAATAGTTTTATATTTTGCATGAAATTTCGTT-TCTTAAGCTCCAAGTC
1 GACTCTTTCCGTATTTCAATAGTTTTATATTTTGCATGAAATTTC-TTGTCTTAAGCTCCAAGTC
288433 TGA
65 TGA
* * *
288436 GACTCTTTCCGTCTTTCACTAGTTTTATATTTTGCATGAAATTTCTTGTCTTAAGCTCCAGGTCT
1 GACTCTTTCCGTATTTCAATAGTTTTATATTTTGCATGAAATTTCTTGTCTTAAGCTCCAAGTCT
288501 AGTCAAACAA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 2 0.03
67 59 0.97
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (67 bp):
GACTCTTTCCGTATTTCAATAGTTTTATATTTTGCATGAAATTTCTTGTCTTAAGCTCCAAGTCT
GA
Found at i:292781 original size:3 final size:3
Alignment explanation
Indices: 292773--292849 Score: 127
Period size: 3 Copynumber: 25.7 Consensus size: 3
292763 ATATTATAAA
* *
292773 TAT TAT TAT TAT TAT AAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
292821 TAT TAT TAT CAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
292850 AATATATTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:292784 original size:15 final size:15
Alignment explanation
Indices: 292764--292846 Score: 105
Period size: 15 Copynumber: 5.5 Consensus size: 15
292754 TTTTTACCCA
*
292764 TATTATAAATATTAT
1 TATTATTAATATTAT
292779 TATTATT-ATAATTAT
1 TATTATTAAT-ATTAT
*
292794 TATTATTACTATTAT
1 TATTATTAATATTAT
*
292809 TATTATTATTATTAT
1 TATTATTAATATTAT
* *
292824 TATTATCATTATTAT
1 TATTATTAATATTAT
292839 TATTATTA
1 TATTATTA
292847 TTAAATATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
14 2 0.03
15 58 0.95
16 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTAATATTAT
Found at i:292857 original size:9 final size:10
Alignment explanation
Indices: 292845--292883 Score: 53
Period size: 9 Copynumber: 3.8 Consensus size: 10
292835 TTATTATTAT
292845 TATTAAAT-A
1 TATTAAATAA
292854 TATTAAATACA
1 TATTAAATA-A
292865 TATATAAATAA
1 TAT-TAAATAA
292876 TATTAAAT
1 TATTAAAT
292884 TACAAGCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.30
10 5 0.19
11 8 0.30
12 6 0.22
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (10 bp):
TATTAAATAA
Found at i:292990 original size:16 final size:16
Alignment explanation
Indices: 292969--293005 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
292959 CCTAATACCT
292969 AGCCGCCTCTGCCTCC
1 AGCCGCCTCTGCCTCC
292985 AGCCGCCTCTGCCTCC
1 AGCCGCCTCTGCCTCC
293001 A-CCGC
1 AGCCGC
293006 TGCCACATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.08, C:0.57, G:0.19, T:0.16
Consensus pattern (16 bp):
AGCCGCCTCTGCCTCC
Found at i:293209 original size:13 final size:13
Alignment explanation
Indices: 293191--293215 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
293181 ACAGAGGGAC
293191 AGAGACAGAAAAG
1 AGAGACAGAAAAG
293204 AGAGACAGAAAA
1 AGAGACAGAAAA
293216 TACACAGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (13 bp):
AGAGACAGAAAAG
Found at i:293224 original size:19 final size:19
Alignment explanation
Indices: 293202--293238 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
293192 GAGACAGAAA
293202 AGAGAGACAGA-AAATACAC
1 AGAGAGA-AGAGAAATACAC
293221 AGAGAGAAGAGAAATACA
1 AGAGAGAAGAGAAATACA
293239 AAGAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.59, C:0.11, G:0.24, T:0.05
Consensus pattern (19 bp):
AGAGAGAAGAGAAATACAC
Found at i:305511 original size:1 final size:1
Alignment explanation
Indices: 305505--305557 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
305495 ATGCTTGAAG
* * * * * *
305505 AAAAAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGAAAAGAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
305558 GGGGGGTCAA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (1 bp):
A
Found at i:305523 original size:16 final size:16
Alignment explanation
Indices: 305502--305557 Score: 80
Period size: 15 Copynumber: 3.5 Consensus size: 16
305492 ATTATGCTTG
305502 AAGAAAAAAAAAGAAA
1 AAGAAAAAAAAAGAAA
305518 AAG-AAAAAAAAGAAA
1 AAGAAAAAAAAAGAAA
305533 AA-AAAAAGAAAAGAAAA
1 AAGAAAAA-AAAAG-AAA
305550 AAGAAAAA
1 AAGAAAAA
305558 GGGGGGTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
15 18 0.50
16 8 0.22
17 5 0.14
18 5 0.14
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAAAAGAAA
Found at i:306650 original size:83 final size:83
Alignment explanation
Indices: 306526--306861 Score: 627
Period size: 83 Copynumber: 4.0 Consensus size: 83
306516 GAATTTGCCA
306526 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
306591 TAGAAGATGAATGTGTTC
66 TAGAAGATGAATGTGTTC
306609 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
306674 TAGAAGATGAATGTGTTC
66 TAGAAGATGAATGTGTTC
* *
306692 ATATCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
306757 TAGAAGATGAATGTGTTC
66 TAGAAGATGAATGTGTTC
306775 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
* * *
306840 TGGAAGATGAATTTGCTC
66 TAGAAGATGAATGTGTTC
306858 ATAG
1 ATAG
306862 TAGAAATAAG
Statistics
Matches: 246, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 246 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (83 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
TAGAAGATGAATGTGTTC
Found at i:307022 original size:197 final size:188
Alignment explanation
Indices: 306696--307057 Score: 589
Period size: 197 Copynumber: 1.9 Consensus size: 188
306686 GTGTTCATAT
*
306696 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGA
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGACTGAACCAATCATTGAATTTAGA
*
306761 AGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAA
66 AGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAA
* *
306826 CCAATCATTGAATTTGGAAGATGAATTTGCTCATAGTAGAAATAAGGAGACTCAATAG
131 CCAATCATTGAATTTAGAAGATGAATGTGCTCATAGTAGAAATAAGGAGACTCAATAG
*
306884 CATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCAATCATT
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT-GGTT--T--G-ACT---GAACCAATCATT
306949 GAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGAT
57 GAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGAT
*
307014 TTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATA
122 TTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCATA
307058 TCATCTTCTG
Statistics
Matches: 159, Mismatches: 6, Indels: 9
0.91 0.03 0.05
Matches are distributed among these distances:
188 34 0.21
189 4 0.03
191 1 0.01
193 1 0.01
194 2 0.01
197 117 0.74
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (188 bp):
CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGACTGAACCAATCATTGAATTTAGA
AGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAA
CCAATCATTGAATTTAGAAGATGAATGTGCTCATAGTAGAAATAAGGAGACTCAATAG
Found at i:307050 original size:83 final size:83
Alignment explanation
Indices: 306935--307224 Score: 526
Period size: 83 Copynumber: 3.5 Consensus size: 83
306925 GTAAGAACTA
306935 CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAG
1 CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAG
*
307000 TTATCTGATCTGATTTGG
66 TTATCTGATCTGGTTTGG
*
307018 CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGTGTTCTTTGAG
1 CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAG
307083 TTATCTGATCTGGTTTGG
66 TTATCTGATCTGGTTTGG
*
307101 CTGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAG
1 CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAG
307166 TTATCTGATCTGGTTTGG
66 TTATCTGATCTGGTTTGG
* * *
307184 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCATAG
1 CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAG
307225 TAGAAATAAG
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 199 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (83 bp):
CAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAG
TTATCTGATCTGGTTTGG
Found at i:307101 original size:280 final size:271
Alignment explanation
Indices: 306609--307141 Score: 895
Period size: 280 Copynumber: 1.9 Consensus size: 271
306599 GAATGTGTTC
*
306609 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGACAGAACCAATCATTGAATT
* *
306674 TAGAAGATGAATGTGTTCATATCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
66 TAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGC
*
306739 TGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
131 AGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
* *
306804 TATCTGATCTGGTTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCATAGTAGAAAT
196 TATCTGATCTGGTTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAGTAGAAAT
306869 AAGGAGACTCA
261 AAGGAGACTCA
*
306880 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT-GGTT--T--G----ACAGAACCAAT
306945 CATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
57 CATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
307010 TGATTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGTGT
122 TGATTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGT
* *
307075 TCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGAAGATGAATGTGTTCAT
187 TCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCAT
307140 AG
252 AG
307142 CATCTTCTGG
Statistics
Matches: 243, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
271 38 0.16
272 4 0.02
274 1 0.00
276 1 0.00
280 199 0.82
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (271 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGACAGAACCAATCATTGAATT
TAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGC
AGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
TATCTGATCTGGTTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAGTAGAAAT
AAGGAGACTCA
Found at i:307167 original size:166 final size:171
Alignment explanation
Indices: 306884--307223 Score: 555
Period size: 166 Copynumber: 2.0 Consensus size: 171
306874 GACTCAATAG
*
306884 CATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCAATCATT
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGGTT-GT-AGAACT--AGAACCAATCATT
306949 GAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGAT
62 GAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGAT
*
307014 TTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATAT
127 TTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAT
*
307059 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT-GGTT-T-G-GCT-GAACCAATCATTGAAT
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGGTTGTAGAACTAGAACCAATCATTGAAT
*
307119 TTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
66 TTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGG
* *
307184 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCATA
131 CAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCATA
307224 GTAGAAATAA
Statistics
Matches: 159, Mismatches: 6, Indels: 9
0.91 0.03 0.05
Matches are distributed among these distances:
166 117 0.74
169 2 0.01
170 1 0.01
172 1 0.01
174 4 0.03
175 34 0.21
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (171 bp):
CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGGTTGTAGAACTAGAACCAATCATTGAAT
TTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGG
CAGAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAT
Found at i:307180 original size:363 final size:363
Alignment explanation
Indices: 306524--307327 Score: 1484
Period size: 363 Copynumber: 2.2 Consensus size: 363
306514 ATGAATTTGC
* *
306524 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT-GGTT--T--G----GCAGAACCA
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCA
306580 ATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
66 ATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
*
306645 TCTGGTTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGT
131 TCTGATTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGT
306710 GTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGAAGATGAATGTGTTC
196 GTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGAAGATGAATGTGTTC
306775 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
261 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
306840 TGGAAGATGAATTTGCTCATAGTAGAAATAAGGAGACT
326 TGGAAGATGAATTTGCTCATAGTAGAAATAAGGAGACT
306878 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCA
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCA
306943 ATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
66 ATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
307008 TCTGATTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGT
131 TCTGATTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGT
307073 GTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGAAGATGAATGTGTTC
196 GTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGAAGATGAATGTGTTC
307138 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
261 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
307203 TGGAAGATGAATTTGCTCATAGTAGAAATAAGGAGACT
326 TGGAAGATGAATTTGCTCATAGTAGAAATAAGGAGACT
*
307241 CAATAGCATCTTTTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCA
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCA
*
307306 ATCATTGGAA-TTAAAAGATGAA
66 ATCATT-GAATTTAGAAGATGAA
307328 CTGCATGATC
Statistics
Matches: 435, Mismatches: 5, Indels: 11
0.96 0.01 0.02
Matches are distributed among these distances:
354 40 0.09
355 4 0.01
357 1 0.00
359 1 0.00
363 386 0.89
364 3 0.01
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (363 bp):
CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGGTTGGTAAGAACTACAGAACCA
ATCATTGAATTTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
TCTGATTTGGCAGAACCAATCATTGAATTTAGAAGATGAATGTGTTCATATCATCTTCTGGAAGT
GTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATTTAGAAGATGAATGTGTTC
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
TGGAAGATGAATTTGCTCATAGTAGAAATAAGGAGACT
Found at i:308145 original size:101 final size:103
Alignment explanation
Indices: 308013--308532 Score: 528
Period size: 113 Copynumber: 4.8 Consensus size: 103
308003 TAGCAAAGAT
* *
308013 TCAAATCTATCATTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
308078 AGAAGGAAGAAGAAGT-T-AATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAGTATAAATTTGTTCAACCTTTTGC
** * *
308114 TTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATTTGA
1 TCAAATCCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
*
308179 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAG-AA---GT-AT----A-AATTTGTTCAACCTTTTGC
**
308227 TCAAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
*
308292 AGAAGGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAG----T-AT----A-AATTTGTTCAACCTTTTGC
* ** *
308340 TCAAATCCATCACTTGATGAATTAGCTTTGACAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
* *
308405 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTAC
66 AGAAGGAAGAAGAAG----T-AT----A-AATTTGTTCAACCTTTTGC
* * *
308453 -CTGAATTCATCAATTGATGGATTATCTTTT-CCAGAGAA-GTTCATAATGAGAAGAACTCATCT
1 TC-AAATCCATCACTTGATGGATTAT-TTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCT
* *
308515 AAAGAAGGAATAAGAAGT
64 GAAGAAGGAAGAAGAAGT
308533 TCATAATAAG
Statistics
Matches: 372, Mismatches: 29, Indels: 29
0.87 0.07 0.07
Matches are distributed among these distances:
101 71 0.19
102 2 0.01
105 1 0.00
107 1 0.00
108 1 0.00
112 42 0.11
113 251 0.67
114 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.29
Consensus pattern (103 bp):
TCAAATCCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTATAAATTTGTTCAACCTTTTGC
Found at i:308293 original size:113 final size:113
Alignment explanation
Indices: 308095--308564 Score: 719
Period size: 113 Copynumber: 4.2 Consensus size: 113
308085 AGAAGAAGTT
** * **
308095 AATTTGTTCAACCTTTTGCTTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGTTCATA
1 AATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCATA
* *
308160 ATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAATTCATAATGAGAAG
66 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
308208 AATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCATA
1 AATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCATA
*
308273 ATGAGAAGAACTCATCTGAAGAAGGAAAAAGAAGTTCATAATGAGAAG
66 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
* *
308321 AATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAATTAGCTTTGACAGAGAAGGTTCATA
1 AATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCATA
308386 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
66 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
* * * * * * *
308434 AACTTGTTCAACCTTTTAC-CTGAATTCATCAATTGATGGATTATCTTTTCCAGAGAA-GTTCAT
1 AATTTGTTCAACCTTTTGCTC-AAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCAT
* * *
308497 AATGAGAAGAACTCATCTAAAGAAGGAATAAGAAGTTCATAATAAGAAG
65 AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
* *
308546 AACTTGTTCAACTTTTTGC
1 AATTTGTTCAACCTTTTGC
308565 ATAATTCTAT
Statistics
Matches: 331, Mismatches: 25, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
112 70 0.21
113 261 0.79
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (113 bp):
AATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAGAAGGTTCATA
ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
Found at i:308901 original size:3 final size:3
Alignment explanation
Indices: 308893--308972 Score: 106
Period size: 3 Copynumber: 26.7 Consensus size: 3
308883 ATATTATAAA
* * * * *
308893 TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT TAC TAT AAT AAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
308941 TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
308973 AATATATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:308904 original size:15 final size:14
Alignment explanation
Indices: 308884--308970 Score: 78
Period size: 15 Copynumber: 6.4 Consensus size: 14
308874 TTTTTACCCA
308884 TATTATAA-A-TAT
1 TATTATAATATTAT
308896 TATTAT--TATTAT
1 TATTATAATATTAT
308908 TATTATAATTATTAT
1 TATTATAA-TATTAT
* *
308923 TACTATAATAATAAT
1 TATTATAAT-ATTAT
308938 TATTAT--TATTAT
1 TATTATAATATTAT
*
308950 TATTATCATTATTAT
1 TATTAT-AATATTAT
308965 TATTAT
1 TATTAT
308971 TAAATATATT
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
11 1 0.02
12 25 0.40
13 1 0.02
14 1 0.02
15 34 0.55
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTATAATATTAT
Found at i:308980 original size:9 final size:10
Alignment explanation
Indices: 308968--309006 Score: 53
Period size: 9 Copynumber: 3.8 Consensus size: 10
308958 TTATTATTAT
308968 TATTAAAT-A
1 TATTAAATAA
308977 TATTAAATACA
1 TATTAAATA-A
308988 TATATAAATAA
1 TAT-TAAATAA
308999 TATTAAAT
1 TATTAAAT
309007 TACAAGCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.30
10 5 0.19
11 8 0.30
12 6 0.22
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (10 bp):
TATTAAATAA
Found at i:308980 original size:15 final size:15
Alignment explanation
Indices: 308902--308981 Score: 53
Period size: 15 Copynumber: 5.3 Consensus size: 15
308892 ATATTATTAT
308902 TATTATTATTATAAT-
1 TATTATTATTA-AATA
*
308917 TATTATTACTATAATAA
1 TATTATTATTA-AAT-A
308934 TAATTATTATT--AT-
1 T-ATTATTATTAAATA
* *
308947 TATTATTA-TCATTA
1 TATTATTATTAAATA
308961 TTATTATTATTAAATA
1 -TATTATTATTAAATA
308977 TATTA
1 TATTA
308982 AATACATATA
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
11 1 0.02
12 7 0.13
13 2 0.04
15 29 0.56
16 4 0.08
17 1 0.02
18 8 0.15
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTATTATTAAATA
Found at i:308980 original size:18 final size:21
Alignment explanation
Indices: 308884--308981 Score: 119
Period size: 21 Copynumber: 4.7 Consensus size: 21
308874 TTTTTACCCA
308884 TATTATAA-ATATTATTATTAT
1 TATTATAATA-ATTATTATTAT
* *
308905 TATTATTATAATTATTATTAC
1 TATTATAATAATTATTATTAT
*
308926 TATAATAATAATTATTATTAT
1 TATTATAATAATTATTATTAT
* *
308947 TATTATTATCATTATTATTAT
1 TATTATAATAATTATTATTAT
308968 TATTA-AATATATTA
1 TATTATAATA-ATTA
308982 AATACATATA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
20 2 0.03
21 62 0.95
22 1 0.02
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTATAATAATTATTATTAT
Found at i:309114 original size:16 final size:16
Alignment explanation
Indices: 309093--309144 Score: 97
Period size: 16 Copynumber: 3.3 Consensus size: 16
309083 CTAATCCCTG
309093 GCCGCCTCTGCCTCCA
1 GCCGCCTCTGCCTCCA
309109 GCCGCCTCTGCCTCCA
1 GCCGCCTCTGCCTCCA
309125 GCCGCCTCTGCCTCCA
1 GCCGCCTCTGCCTCCA
309141 -CCGC
1 GCCGC
309145 TGCCACGTCC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 4 0.11
16 32 0.89
ACGTcount: A:0.06, C:0.58, G:0.19, T:0.17
Consensus pattern (16 bp):
GCCGCCTCTGCCTCCA
Found at i:309353 original size:13 final size:13
Alignment explanation
Indices: 309335--309359 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
309325 ACAGAGGGAC
309335 AGAGACAGAAAAG
1 AGAGACAGAAAAG
309348 AGAGACAGAAAA
1 AGAGACAGAAAA
309360 TACACAGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (13 bp):
AGAGACAGAAAAG
Found at i:309368 original size:19 final size:19
Alignment explanation
Indices: 309346--309382 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
309336 GAGACAGAAA
309346 AGAGAGACAGA-AAATACAC
1 AGAGAGA-AGAGAAATACAC
309365 AGAGAGAAGAGAAATACA
1 AGAGAGAAGAGAAATACA
309383 AAGAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.59, C:0.11, G:0.24, T:0.05
Consensus pattern (19 bp):
AGAGAGAAGAGAAATACAC
Found at i:313835 original size:36 final size:36
Alignment explanation
Indices: 313777--314116 Score: 283
Period size: 36 Copynumber: 9.8 Consensus size: 36
313767 AGTTTGATCC
* * *
313777 TGAACCTCAAGCTAAGCCACAACATGAATCGGCTAG
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
313813 TGAACCTCAGGCTGAG-CTACAACATGAATCGGCTAG
1 TGAACCTCAGGCTGAGCCT-CAACATGAATCGGCTAG
*
313849 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAC
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
313885 TGAACCTCAGGCTGAGCCTCAACATGAAT---C-AG
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
* * *
313917 T-----T-A--CTGAGCCTCAACGTGAATCAGCTAC
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
* * *
313945 TGAACCGCAGGCTGAGCCTCAACATGAATCAGCTAC
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
* ** * * * *
313981 TGAGCCTCAACCTGAGCCTCAATACGAATCAGCTAC
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
* * * ** ** *
314017 TGAACCTAAGGATAAGATTCAACATGAATTAGCTAC
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
** * ** * *
314053 TGAACCTCAGATTGTGCCTCAACATGAATTAGCAAC
1 TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
*
314089 TGAACCTCAGGATGAGCCTCAACATGAA
1 TGAACCTCAGGCTGAGCCTCAACATGAA
314117 CTGGCTTCTG
Statistics
Matches: 253, Mismatches: 37, Indels: 28
0.80 0.12 0.09
Matches are distributed among these distances:
24 17 0.07
26 1 0.00
27 2 0.01
28 2 0.01
32 2 0.01
33 1 0.00
34 1 0.00
35 1 0.00
36 224 0.89
37 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (36 bp):
TGAACCTCAGGCTGAGCCTCAACATGAATCGGCTAG
Found at i:313894 original size:72 final size:72
Alignment explanation
Indices: 313776--314116 Score: 341
Period size: 72 Copynumber: 4.9 Consensus size: 72
313766 GAGTTTGATC
* * * *
313776 CTGAACCTCAAGCTAAGCCACAACATGAATCGGCTAGTGAACCTCAGGCTGAG-CTACAACATGA
1 CTGAACCTCAAGCTGAGCCTCAACATGAATCAGCTACTGAACCTCAGGCTGAGCCT-CAACATGA
*
313840 ATCGGCTA
65 ATCAGCTA
* * *
313848 GTGAACCTCAGGCTGAGCCTCAACATGAATCGGCTACTGAACCTCAGGCTGAGCCTCAACATGAA
1 CTGAACCTCAAGCTGAGCCTCAACATGAATCAGCTACTGAACCTCAGGCTGAGCCTCAACATGAA
313913 TCAG---
66 TCAGCTA
* *
313917 -T-----T--A-CTGAGCCTCAACGTGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAA
1 CTGAACCTCAAGCTGAGCCTCAACATGAATCAGCTACTGAACCTCAGGCTGAGCCTCAACATGAA
313973 TCAGCTA
66 TCAGCTA
* * * * * * * **
313980 CTGAGCCTCAACCTGAGCCTCAATACGAATCAGCTACTGAACCTAAGGATAAGATTCAACATGAA
1 CTGAACCTCAAGCTGAGCCTCAACATGAATCAGCTACTGAACCTCAGGCTGAGCCTCAACATGAA
*
314045 TTAGCTA
66 TCAGCTA
* * * * *
314052 CTGAACCTC-AGATTGTGCCTCAACATGAATTAGCAACTGAACCTCAGGATGAGCCTCAACATGA
1 CTGAACCTCAAG-CTGAGCCTCAACATGAATCAGCTACTGAACCTCAGGCTGAGCCTCAACATGA
314116 A
65 A
314117 CTGGCTTCTG
Statistics
Matches: 223, Mismatches: 32, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
60 54 0.24
63 1 0.00
64 1 0.00
68 1 0.00
69 1 0.00
71 2 0.01
72 161 0.72
73 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (72 bp):
CTGAACCTCAAGCTGAGCCTCAACATGAATCAGCTACTGAACCTCAGGCTGAGCCTCAACATGAA
TCAGCTA
Found at i:313923 original size:24 final size:24
Alignment explanation
Indices: 313896--313947 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
313886 GAACCTCAGG
*
313896 CTGAGCCTCAACATGAATCAGTTA
1 CTGAGCCTCAACATGAATCAGCTA
*
313920 CTGAGCCTCAACGTGAATCAGCTA
1 CTGAGCCTCAACATGAATCAGCTA
313944 CTGA
1 CTGA
313948 ACCGCAGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (24 bp):
CTGAGCCTCAACATGAATCAGCTA
Found at i:313956 original size:60 final size:60
Alignment explanation
Indices: 313860--313991 Score: 228
Period size: 60 Copynumber: 2.2 Consensus size: 60
313850 GAACCTCAGG
* * *
313860 CTGAGCCTCAACATGAATCGGCTACTGAACCTCAGGCTGAGCCTCAACATGAATCAGTTA
1 CTGAGCCTCAACATGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTA
*
313920 CTGAGCCTCAACGTGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTA
1 CTGAGCCTCAACATGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTA
313980 CTGAGCCTCAAC
1 CTGAGCCTCAAC
313992 CTGAGCCTCA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 68 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (60 bp):
CTGAGCCTCAACATGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTA
Found at i:313989 original size:96 final size:96
Alignment explanation
Indices: 313824--314019 Score: 277
Period size: 96 Copynumber: 2.0 Consensus size: 96
313814 GAACCTCAGG
* * * *
313824 CTGAGCTACAACATGAATCGGCTAGTGAACCTCAGGCTGAGCCTCAACATGAATCGGCTACTGAA
1 CTGAGCTACAACATGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTACTGAA
** * *
313889 CCTCAGGCTGAGCCTCAACATGAATCAGTTA
66 CCTCAACCTGAGCCTCAACACGAATCAGCTA
*
313920 CTGAGCCT-CAACGTGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTACTGA
1 CTGAG-CTACAACATGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTACTGA
* *
313984 GCCTCAACCTGAGCCTCAATACGAATCAGCTA
65 ACCTCAACCTGAGCCTCAACACGAATCAGCTA
314016 CTGA
1 CTGA
314020 ACCTAAGGAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 86 0.98
97 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (96 bp):
CTGAGCTACAACATGAATCAGCTACTGAACCGCAGGCTGAGCCTCAACATGAATCAGCTACTGAA
CCTCAACCTGAGCCTCAACACGAATCAGCTA
Found at i:314039 original size:132 final size:132
Alignment explanation
Indices: 313791--314061 Score: 337
Period size: 132 Copynumber: 2.1 Consensus size: 132
313781 CCTCAAGCTA
* * * * * *
313791 AGCCACAACATGAATCGGCTAGTGAACCTCAGGCTGAGCTACAACATGAATCGGCTAGTGAACCT
1 AGCCTCAACATGAATCAGCTACTGAACCGCAGGCTGAGCTACAACATGAATCAGCTACTGAACCT
** * * * * * * *
313856 CAGGCTGAGCCTCAACATGAATCGGCTACTGAACCTCAGGCTGAGCCTCAACATGAATCAGTTAC
66 CAACCTGAGCCTCAACACGAATCAGCTACTGAACCTAAGGATAAGACTCAACATGAATCAGCTAC
313921 TG
131 TG
* *
313923 AGCCTCAACGTGAATCAGCTACTGAACCGCAGGCTGAGCCT-CAACATGAATCAGCTACTGAGCC
1 AGCCTCAACATGAATCAGCTACTGAACCGCAGGCTGAG-CTACAACATGAATCAGCTACTGAACC
* * *
313987 TCAACCTGAGCCTCAATACGAATCAGCTACTGAACCTAAGGATAAGATTCAACATGAATTAGCTA
65 TCAACCTGAGCCTCAACACGAATCAGCTACTGAACCTAAGGATAAGACTCAACATGAATCAGCTA
314052 CTG
130 CTG
*
314055 AACCTCA
1 AGCCTCA
314062 GATTGTGCCT
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
132 115 0.98
133 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (132 bp):
AGCCTCAACATGAATCAGCTACTGAACCGCAGGCTGAGCTACAACATGAATCAGCTACTGAACCT
CAACCTGAGCCTCAACACGAATCAGCTACTGAACCTAAGGATAAGACTCAACATGAATCAGCTAC
TG
Found at i:316559 original size:167 final size:167
Alignment explanation
Indices: 316275--316591 Score: 494
Period size: 167 Copynumber: 1.9 Consensus size: 167
316265 GACTGGTAAG
* * *
316275 TTACTCGAACGACCTAGCACCTTTAGGGCATTTGTTAGCAATACCTAACTAGAAGCCATGTATAA
1 TTACTCGAACGAACTAGCACCTTTAGGGCATTTGTAAGCAACACCTAACTAGAAGCCATGTATAA
* *
316340 ATTACTAGTTATCGTTCTGATTACTGCACTGGAATTGAGCTACTATGAGACAATGCCATTAAACC
66 ATTACTAGTTATCGTTCTGATTACTGCACTGGAATTGAACTACTACGAGACAATGCCATTAAACC
* *
316405 TAAAGCCCATATCTTTTGTTATAGCAATACCAGAAAA
131 CAAAACCCATATCTTTTGTTATAGCAATACCAGAAAA
* * *
316442 TTACTCGAACGAACTAGCACC-TTAGGGCATTTGTAAGCAACATCTATCTAGAAGGC-TGATATA
1 TTACTCGAACGAACTAGCACCTTTAGGGCATTTGTAAGCAACACCTAACTAGAAGCCATG-TATA
* *
316505 AATTATTTAGTTATCGTTCTTATTACTGCACTGGAATTGAACTACTACGAGACAATGCCATTAAA
65 AATTA-CTAGTTATCGTTCTGATTACTGCACTGGAATTGAACTACTACGAGACAATGCCATTAAA
316570 CCCAAAACCCATATCTTTTGTT
129 CCCAAAACCCATATCTTTTGTT
316592 CTGGTTGCAG
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
165 2 0.01
166 39 0.29
167 95 0.70
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (167 bp):
TTACTCGAACGAACTAGCACCTTTAGGGCATTTGTAAGCAACACCTAACTAGAAGCCATGTATAA
ATTACTAGTTATCGTTCTGATTACTGCACTGGAATTGAACTACTACGAGACAATGCCATTAAACC
CAAAACCCATATCTTTTGTTATAGCAATACCAGAAAA
Found at i:324250 original size:9 final size:9
Alignment explanation
Indices: 324236--324268 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
324226 TTCGTCCCAA
*
324236 ATTATTATT
1 ATTATTCTT
324245 ATTATTCTT
1 ATTATTCTT
324254 ATTATTCTT
1 ATTATTCTT
324263 ATTATT
1 ATTATT
324269 TAATAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTATTCTT
Found at i:325639 original size:19 final size:20
Alignment explanation
Indices: 325615--325654 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
325605 AATCCCTAAA
325615 AATATTATATTAAT-TATTT
1 AATATTATATTAATATATTT
* *
325634 AATATTTTATTTATATATTT
1 AATATTATATTAATATATTT
325654 A
1 A
325655 TAAATTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
AATATTATATTAATATATTT
Found at i:327522 original size:31 final size:31
Alignment explanation
Indices: 327477--327567 Score: 114
Period size: 31 Copynumber: 2.9 Consensus size: 31
327467 AAGAGTTGAG
327477 GGTTACTTATGTCCTTCGGGATATATGGACA
1 GGTTACTTATGTCCTTCGGGATATATGGACA
* ** *
327508 GTTTAGC-TATGTCCTTTAGGACATATGGACA
1 GGTTA-CTTATGTCCTTCGGGATATATGGACA
327539 GGTTACTTATGTCCTTCGGGACT-TATGGA
1 GGTTACTTATGTCCTTCGGGA-TATATGGA
327568 TAGTGGTCAT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
30 1 0.02
31 47 0.96
32 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.36
Consensus pattern (31 bp):
GGTTACTTATGTCCTTCGGGATATATGGACA
Found at i:327594 original size:18 final size:18
Alignment explanation
Indices: 327571--327605 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
327561 TTATGGATAG
327571 TGGTCATTCGGGACAAAA
1 TGGTCATTCGGGACAAAA
*
327589 TGGTCATTTGGGACAAA
1 TGGTCATTCGGGACAAA
327606 TTTCAAGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (18 bp):
TGGTCATTCGGGACAAAA
Found at i:331537 original size:15 final size:17
Alignment explanation
Indices: 331507--331539 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
331497 ACTGGAATGC
331507 AAGATCATTGATTTGAG
1 AAGATCATTGATTTGAG
331524 AAGA-CATT-ATTTGAG
1 AAGATCATTGATTTGAG
331539 A
1 A
331540 CATAAAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 4 0.25
17 4 0.25
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.33
Consensus pattern (17 bp):
AAGATCATTGATTTGAG
Found at i:332825 original size:67 final size:66
Alignment explanation
Indices: 332716--333197 Score: 425
Period size: 67 Copynumber: 7.7 Consensus size: 66
332706 TGAATATGAG
* * *
332716 TCAATCCTTGACTTCTTCTTGAATAGAAGTCAATCTTTGTTATTCCAGACTCCCTCGTGAAGAGG
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC-GACTCCCTCGTGAAGAGG
332781 AA
65 AA
* * * *
332783 CCAATCGTTGACTTCCTCTTGAAGAGAAGTCAATCTTTGTTA-T-----T--C-C-TGAAGATGA
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCGACTCCCTCGTGAAGAGGA
*
332838 G
66 A
* * *
332839 TCAATCATTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCAGACTCCATCGTGAAGATG
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC-GACTCCCTCGTGAAGA-G
332904 G-A
64 GAA
* * * *
332906 CCAATCCTTGGCTTCCTCGTGAAGAGAAATCAATCTTTGTTA-T-----T--C-C-TGAATAGGA
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCGACTCCCTCGTGAAGAGGA
*
332961 G
66 A
* * *
332962 TTAATCCTTGACTTCCTCGTGAATAGAAGCCAATCTTTGTTATTCCAGACTCCCTCGTGAAGAGG
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC-GACTCCCTCGTGAAGAGG
333027 AA
65 AA
* * * *
333029 CCAATCCTTGACTTCCTCATTAAGAGAAGTCAATCTTTGTTA-T-----T--C-C-TAAAGAGGA
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCGACTCCCTCGTGAAGAGGA
*
333084 G
66 A
* * * *
333085 TTAATCATTGACTTTCTCGTGAAGATAAGTCAA-CATTTGTTATTCCTGACTCCCTCGTGAAGAG
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATC-TTTGTTATTCC-GACTCCCTCGTGAAGAG
333149 GAA
64 GAA
*
333152 TCAATCATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC
1 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC
333198 TAAAAAGAAG
Statistics
Matches: 330, Mismatches: 48, Indels: 74
0.73 0.11 0.16
Matches are distributed among these distances:
55 3 0.01
56 129 0.39
57 6 0.02
58 2 0.01
60 3 0.01
63 3 0.01
65 2 0.01
66 6 0.02
67 174 0.53
68 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (66 bp):
TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCGACTCCCTCGTGAAGAGGA
A
Found at i:332839 original size:123 final size:123
Alignment explanation
Indices: 332713--333213 Score: 718
Period size: 123 Copynumber: 4.1 Consensus size: 123
332703 TATTGAATAT
* * * *
332713 GAGTCAATCCTTGACTTCTTCTTGAATAGAAGTCAATCTTTGTTATTCCAGACTCCCTCGTGAAG
1 GAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCAGACTCCCTCGTGAAG
* * *
332778 AGGAACCAATCGTTGACTTCCTCTTGAAGAGAAGTCAATCTTTGTTATTCCTGAAGAT
66 AGGAACCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTGAAGAG
* *
332836 GAGTCAATCATTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCAGACTCCATCGTGAAG
1 GAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCAGACTCCCTCGTGAAG
* * *
332901 ATGG-ACCAATCCTTGGCTTCCTCGTGAAGAGAAATCAATCTTTGTTATTCCTGAATAG
66 A-GGAACCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTGAAGAG
* * * *
332959 GAGTTAATCCTTGACTTCCTCGTGAATAGAAGCCAATCTTTGTTATTCCAGACTCCCTCGTGAAG
1 GAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCAGACTCCCTCGTGAAG
* * *
333024 AGGAACCAATCCTTGACTTCCTCATTAAGAGAAGTCAATCTTTGTTATTCCTAAAGAG
66 AGGAACCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTGAAGAG
* * * *
333082 GAGTTAATCATTGACTTTCTCGTGAAGATAAGTCAA-CATTTGTTATTCCTGACTCCCTCGTGAA
1 GAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAATC-TTTGTTATTCCAGACTCCCTCGTGAA
* * * *
333146 GAGGAATCAATCATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAAAG
65 GAGGAACCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTGAAGAG
*
333205 AAGTCAATC
1 GAGTCAATC
333214 TTTTCTATTC
Statistics
Matches: 339, Mismatches: 36, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
122 3 0.01
123 334 0.99
124 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (123 bp):
GAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCAGACTCCCTCGTGAAG
AGGAACCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTGAAGAG
Found at i:332840 original size:27 final size:27
Alignment explanation
Indices: 332802--332884 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
332792 GACTTCCTCT
332802 TGAAGAGAAGTCAATCTTTGTTATTCC
1 TGAAGAGAAGTCAATCTTTGTTATTCC
* ** *
332829 TGAAGATG-AGTCAATCATTGACTTCCTCA
1 TGAAGA-GAAGTCAATCTTTG--TTATTCC
332858 TGAAGAGAAGTCAATCTTTGTTATTCC
1 TGAAGAGAAGTCAATCTTTGTTATTCC
332885 AGACTCCATC
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
27 21 0.48
28 2 0.05
29 21 0.48
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (27 bp):
TGAAGAGAAGTCAATCTTTGTTATTCC
Found at i:333212 original size:27 final size:27
Alignment explanation
Indices: 333176--333243 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
333166 CCTCGTGAAG
333176 AGAAGTCAATCTTTGT-TATTCCTAAAA
1 AGAAGTCAATCTTT-TCTATTCCTAAAA
** *
333203 AGAAGTCAATCTTTTCTATTCCTGTAG
1 AGAAGTCAATCTTTTCTATTCCTAAAA
*
333230 AGGAGTCAATCTTT
1 AGAAGTCAATCTTT
333244 CAGATTCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (27 bp):
AGAAGTCAATCTTTTCTATTCCTAAAA
Found at i:335803 original size:54 final size:53
Alignment explanation
Indices: 335711--335815 Score: 174
Period size: 54 Copynumber: 2.0 Consensus size: 53
335701 CATGATCAAA
* *
335711 TTGGTGATTTGAAAGCATATAAAACAATGCTTAATTGTCAAGAGAGAATAAAC
1 TTGGTGATTTGAAAGCATATAAAACAATGCATAATTGTCAAGAGAAAATAAAC
*
335764 TTGGTGATTTGAAAGCAATATTAAACAATGCATAATTGTCAAGAGAAAATAA
1 TTGGTGATTTGAAAGC-ATATAAAACAATGCATAATTGTCAAGAGAAAATAA
335816 CGGTGAAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 16 0.33
54 32 0.67
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.29
Consensus pattern (53 bp):
TTGGTGATTTGAAAGCATATAAAACAATGCATAATTGTCAAGAGAAAATAAAC
Found at i:336488 original size:3 final size:3
Alignment explanation
Indices: 336480--336539 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
336470 AATTGTCACG
336480 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
336528 TAT TAT TAT TAT
1 TAT TAT TAT TAT
336540 AAGTGTCGCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:338128 original size:32 final size:33
Alignment explanation
Indices: 338087--338173 Score: 158
Period size: 33 Copynumber: 2.7 Consensus size: 33
338077 TTCTAATTTT
338087 TCCCTACTTTTCCATTAGTGTGAT-TTTACTTA
1 TCCCTACTTTTCCATTAGTGTGATGTTTACTTA
338119 TCCCTACTTTTCCATTAGTGTGATGTTTACTTA
1 TCCCTACTTTTCCATTAGTGTGATGTTTACTTA
*
338152 TCCCTATTTTTCCATTAGTGTG
1 TCCCTACTTTTCCATTAGTGTG
338174 GTCAGACTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 24 0.45
33 29 0.55
ACGTcount: A:0.17, C:0.22, G:0.11, T:0.49
Consensus pattern (33 bp):
TCCCTACTTTTCCATTAGTGTGATGTTTACTTA
Found at i:341667 original size:20 final size:20
Alignment explanation
Indices: 341639--341697 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
341629 CACTGAATAT
341639 TTGTCCCGAAGGACCACTGA
1 TTGTCCCGAAGGACCACTGA
* *
341659 TTGTTCCGAAGAACCACT-A
1 TTGTCCCGAAGGACCACTGA
*
341678 -TGTCCCGAAAGACCACTGA
1 TTGTCCCGAAGGACCACTGA
341697 T
1 T
341698 AATCCCTCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 14 0.44
19 2 0.06
20 16 0.50
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (20 bp):
TTGTCCCGAAGGACCACTGA
Found at i:344171 original size:12 final size:12
Alignment explanation
Indices: 344154--344179 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
344144 ACTATTCTAA
344154 TAAAATTGAATT
1 TAAAATTGAATT
344166 TAAAATTGAATT
1 TAAAATTGAATT
344178 TA
1 TA
344180 TGAGAAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
TAAAATTGAATT
Found at i:347157 original size:45 final size:45
Alignment explanation
Indices: 347071--347157 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
347061 CCATTTATTA
* *
347071 ACCATAAGCTTGTAAGCTTATTTTACCAAAATACTTACCATTTGT
1 ACCATAAGCTCGTAAGCTTATTTTACCAAAACACTTACCATTTGT
* *
347116 ACCATAAGCTCGTAAGCTTATTTTACCAATACACTTGCCATT
1 ACCATAAGCTCGTAAGCTTATTTTACCAAAACACTTACCATT
347158 ATTCCATAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (45 bp):
ACCATAAGCTCGTAAGCTTATTTTACCAAAACACTTACCATTTGT
Found at i:347339 original size:59 final size:59
Alignment explanation
Indices: 347247--347375 Score: 177
Period size: 59 Copynumber: 2.2 Consensus size: 59
347237 CGTAGTGCTA
* * * **
347247 TCCCGAGTATGACACATAAGGTCGTGTCCACCATCTGTACTAGGTATCCTTAAGTACAG
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAG
* ** *
347306 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTAT
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAG
347365 TCCCGAATATG
1 TCCCGAATATG
347376 CAGCCTGTTG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (59 bp):
TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAG
Found at i:354603 original size:45 final size:45
Alignment explanation
Indices: 354517--354603 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
354507 CCATTTATTA
* *
354517 ACCATAAGCTTGTAAGCTTATTTTACCAAAATACTTACCATTTGT
1 ACCATAAGCTCGTAAGCTTATTTTACCAAAACACTTACCATTTGT
* *
354562 ACCATAAGCTCGTAAGCTTATTTTACCAATACACTTGCCATT
1 ACCATAAGCTCGTAAGCTTATTTTACCAAAACACTTACCATT
354604 ATTCCATAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (45 bp):
ACCATAAGCTCGTAAGCTTATTTTACCAAAACACTTACCATTTGT
Found at i:354818 original size:59 final size:59
Alignment explanation
Indices: 354700--354821 Score: 163
Period size: 59 Copynumber: 2.1 Consensus size: 59
354690 CTATCCCGGG
* * ** *
354700 TATGACACATAAGGTCGTGTCCACCATCTGTACTAGGTATCCTTAAGTACAGTCTCGAA
1 TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAGTCCCGAA
* ** *
354759 TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTATTCCCGAA
1 TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAGTCCCGAA
354818 TATG
1 TATG
354822 CAGCCTGCTG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (59 bp):
TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAGTCCCGAA
Found at i:363937 original size:25 final size:24
Alignment explanation
Indices: 363896--363945 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 24
363886 GTGTTTTGAT
*
363896 ACTTTCAAAAAATTTATTTA-AAA
1 ACTTTAAAAAAATTTATTTATAAA
363919 ACTTTAAAAAAATTATTATTTATAAA
1 ACTTTAAAAAAA-T-TTATTTATAAA
363945 A
1 A
363946 AAATCTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 1 0.04
25 7 0.30
26 4 0.17
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (24 bp):
ACTTTAAAAAAATTTATTTATAAA
Found at i:363946 original size:18 final size:18
Alignment explanation
Indices: 363923--363959 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
363913 TTAAAAACTT
363923 TAAAAAAAT-TATTATTTA
1 TAAAAAAATCT-TTATTTA
363941 TAAAAAAATCTTTATTTA
1 TAAAAAAATCTTTATTTA
363959 T
1 T
363960 CTAAAATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAAAAAATCTTTATTTA
Found at i:380446 original size:13 final size:14
Alignment explanation
Indices: 380405--380449 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
380395 TTTTTATTTA
*
380405 TTTAATTTCAATAA
1 TTTAATTTCAATAT
*
380419 TTTAATTTCATTAT
1 TTTAATTTCAATAT
*
380433 TTTAATTT-ACTAT
1 TTTAATTTCAATAT
380446 TTTA
1 TTTA
380450 TTTATTTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
13 8 0.29
14 20 0.71
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTAATTTCAATAT
Found at i:386908 original size:2 final size:2
Alignment explanation
Indices: 386901--386926 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
386891 TTATGATAAG
386901 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
386927 GGTCGGCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:387570 original size:16 final size:17
Alignment explanation
Indices: 387536--387570 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
387526 GCCGGATGTC
387536 TCGCTGGCGCGTGGAAT
1 TCGCTGGCGCGTGGAAT
387553 TCGCTGGCGCGT-GAAT
1 TCGCTGGCGCGTGGAAT
387569 TC
1 TC
387571 CACGCGCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (17 bp):
TCGCTGGCGCGTGGAAT
Found at i:395625 original size:35 final size:35
Alignment explanation
Indices: 395579--395649 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
395569 TATAGTAGAG
395579 AAATTAAACTATGAAGTATTCTAGTTGTAAAAACT
1 AAATTAAACTATGAAGTATTCTAGTTGTAAAAACT
395614 AAATTAAACTATGAAGTATTCTAGTTGTAAAAACT
1 AAATTAAACTATGAAGTATTCTAGTTGTAAAAACT
395649 A
1 A
395650 GTAAATTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (35 bp):
AAATTAAACTATGAAGTATTCTAGTTGTAAAAACT
Found at i:400745 original size:23 final size:23
Alignment explanation
Indices: 400719--400764 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
400709 TTACGGAGTA
400719 CATATTTTTCAACATGTATGCAG
1 CATATTTTTCAACATGTATGCAG
400742 CATATTTTTCAACATGTATGCAG
1 CATATTTTTCAACATGTATGCAG
400765 TTATAGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (23 bp):
CATATTTTTCAACATGTATGCAG
Found at i:405781 original size:28 final size:29
Alignment explanation
Indices: 405726--405785 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
405716 AAAATAAAGT
*
405726 TAAAAAACGTACAAAACAAAATATAATAA
1 TAAAAAACGTACAAAACAAAATAAAATAA
** *
405755 TAAAAAACGTAGTAAATAAAA-AAAATAA
1 TAAAAAACGTACAAAACAAAATAAAATAA
405783 TAA
1 TAA
405786 TACATTTACA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.18
Consensus pattern (29 bp):
TAAAAAACGTACAAAACAAAATAAAATAA
Found at i:405786 original size:31 final size:29
Alignment explanation
Indices: 405726--405787 Score: 79
Period size: 31 Copynumber: 2.1 Consensus size: 29
405716 AAAATAAAGT
* *
405726 TAAAAAACGTACAAAACAAAATATAATAA
1 TAAAAAACGTACAAAAAAAAAAATAATAA
*
405755 TAAAAAACGTAGTAAATAAAAAAAATAATAA
1 TAAAAAACGTA-CAAA-AAAAAAAATAATAA
405786 TA
1 TA
405788 CATTTACATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 11 0.39
30 3 0.11
31 14 0.50
ACGTcount: A:0.69, C:0.06, G:0.05, T:0.19
Consensus pattern (29 bp):
TAAAAAACGTACAAAAAAAAAAATAATAA
Found at i:405832 original size:5 final size:5
Alignment explanation
Indices: 405824--405855 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
405814 GACATGAAAT
405824 ATATA ATATA ATATA ATATA ATATA A-ATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATA
405856 ATAACAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:405844 original size:15 final size:14
Alignment explanation
Indices: 405820--405855 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
405810 TAATGACATG
405820 AAAT-ATATAATAT
1 AAATAATATAATAT
405833 AATATAATATAATAT
1 AA-ATAATATAATAT
405848 AAATAATA
1 AAATAATA
405856 ATAACAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 8 0.38
15 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATAATATAATAT
Found at i:407138 original size:2 final size:2
Alignment explanation
Indices: 407131--407158 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
407121 GAAAATAATT
407131 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
407159 AATAGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:407593 original size:105 final size:105
Alignment explanation
Indices: 407441--408215 Score: 1397
Period size: 105 Copynumber: 7.4 Consensus size: 105
407431 GTATTATTCT
*
407441 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTAACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
*
407506 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
407546 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
407611 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
407651 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
407716 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
407756 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAACTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
*
407821 CAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
407861 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTAACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
*
407926 CAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
407966 GAGTCTAATATCATTCGTTGTGAAGTTGAACTTGACTCTGAAATTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
408031 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
408071 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTAGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
408136 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
408176 GAGTCTAATATCCTTCATTGTGAAGTTGAAATTGACTCTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
408216 GGTAAAACCT
Statistics
Matches: 644, Mismatches: 26, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 644 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:409032 original size:1 final size:1
Alignment explanation
Indices: 409028--409098 Score: 61
Period size: 1 Copynumber: 71.0 Consensus size: 1
409018 CGTTTTTCTC
* * * * * * * * *
409028 TTTTTGTTTTTTTTGTTTTTTTTCTCTTTTGTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
409093 TTTTTT
1 TTTTTT
409099 CCCAACTTAG
Statistics
Matches: 52, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:409039 original size:8 final size:8
Alignment explanation
Indices: 409028--409098 Score: 99
Period size: 8 Copynumber: 8.6 Consensus size: 8
409018 CGTTTTTCTC
409028 TTTTTGTTT
1 TTTTTG-TT
409037 TTTTTGTT
1 TTTTTGTT
409045 TTTTT-TCT
1 TTTTTGT-T
*
409053 CTTTTGTTT
1 TTTTTG-TT
409062 TTTTTGTT
1 TTTTTGTT
409070 TTTTTGTT
1 TTTTTGTT
409078 TTTTTGTT
1 TTTTTGTT
409086 TTTTTGTT
1 TTTTTGTT
409094 TTTTT
1 TTTTT
409099 CCCAACTTAG
Statistics
Matches: 57, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
7 1 0.02
8 43 0.75
9 12 0.21
10 1 0.02
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (8 bp):
TTTTTGTT
Found at i:409057 original size:25 final size:25
Alignment explanation
Indices: 409020--409098 Score: 117
Period size: 25 Copynumber: 3.2 Consensus size: 25
409010 ACCCTAAACG
409020 TTTTTCTCTTTTTGTTTTTTTTGTTT
1 TTTTTCTC-TTTTGTTTTTTTTGTTT
409046 TTTTTCTCTTTTGTTTTTTTTGTTT
1 TTTTTCTCTTTTGTTTTTTTTGTTT
*
409071 TTTTGT-TTTTTTG-TTTTTTTGTTT
1 TTTT-TCTCTTTTGTTTTTTTTGTTT
409095 TTTT
1 TTTT
409099 CCCAACTTAG
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
24 15 0.29
25 27 0.53
26 9 0.18
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (25 bp):
TTTTTCTCTTTTGTTTTTTTTGTTT
Found at i:418562 original size:9 final size:9
Alignment explanation
Indices: 418548--418589 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
418538 ACATAAGGAC
418548 AAAAAAAT-
1 AAAAAAATA
*
418556 AAAAAAATT
1 AAAAAAATA
418565 AAAAAAATA
1 AAAAAAATA
418574 AAAAAAATA
1 AAAAAAATA
418583 AAAAAAA
1 AAAAAAA
418590 AGGTTAGGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 8 0.25
9 24 0.75
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAAATA
Found at i:418568 original size:17 final size:17
Alignment explanation
Indices: 418548--418588 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
418538 ACATAAGGAC
*
418548 AAAAAAATAAAAAAATT
1 AAAAAAATAAAAAAAAT
418565 AAAAAAATAAAAAAAAT
1 AAAAAAATAAAAAAAAT
418582 AAAAAAA
1 AAAAAAA
418589 AAGGTTAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAT
Found at i:420914 original size:2 final size:2
Alignment explanation
Indices: 420907--420953 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
420897 GAAAATAATT
*
420907 TA TA TA TA TA TA TA TG TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
420948 TA TA TA
1 TA TA TA
420954 AATAGTGTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:420926 original size:21 final size:21
Alignment explanation
Indices: 420902--420953 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
420892 AAAACGAAAA
*
420902 TAATTTATATATATATATATG
1 TAATATATATATATATATATG
*
420923 TAATATATATATATATATATA
1 TAATATATATATATATATATG
420944 T-ATATATATA
1 TAATATATATA
420954 AATAGTGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TAATATATATATATATATATG
Found at i:428800 original size:15 final size:15
Alignment explanation
Indices: 428772--428812 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
428762 TTAATTTTTT
428772 ATATCTATAAAATT-A
1 ATAT-TATAAAATTAA
428787 ATATTATAATAATTAA
1 ATATTATAA-AATTAA
428803 ATATTATAAA
1 ATATTATAAA
428813 TAAATATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATTATAAAATTAA
Found at i:428816 original size:13 final size:14
Alignment explanation
Indices: 428772--428819 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
428762 TTAATTTTTT
*
428772 ATATCTATAAAATTA
1 ATAT-TATAAAATAA
428787 ATATTATAATAATTAA
1 ATATTATAA-AA-TAA
428803 ATATTAT-AAATAA
1 ATATTATAAAATAA
428816 ATAT
1 ATAT
428820 AATTAATGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 7 0.23
14 7 0.23
15 7 0.23
16 9 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATTATAAAATAA
Found at i:429957 original size:20 final size:20
Alignment explanation
Indices: 429932--430003 Score: 144
Period size: 20 Copynumber: 3.6 Consensus size: 20
429922 ACTTCGACTA
429932 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
429952 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
429972 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
429992 TCGCATTGCGAT
1 TCGCATTGCGAT
430004 AGTCCAAGTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Done.