genome.fa.s6679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006679.1 Hibiscus syriacus cultivar Beakdansim tig00016564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65511

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556--694	19	7.8	19	68	20	86	12	23	20	43	1.86
586--669	33	2.6	33	90	5	127	13	26	22	38	1.91
637--694	20	2.9	20	80	10	64	13	24	18	43	1.87
2363--2514	81	1.9	78	86	6	216	25	13	17	43	1.85
2804--2870	21	3.2	21	66	6	55	23	35	20	19	1.95
2752--2870	42	2.8	42	81	5	107	22	36	18	22	1.95
4225--4258	14	2.4	14	95	0	59	32	0	23	44	1.54
4367--4437	18	4.1	18	78	15	78	45	19	21	14	1.85
4441--4567	33	3.9	32	86	8	184	14	22	19	43	1.88
4434--4566	66	2.0	66	95	0	239	16	21	19	42	1.89
6857--6881	12	2.1	12	100	0	50	0	28	0	72	0.86
7056--7109	24	2.2	24	90	0	81	40	20	16	22	1.91
7854--7904	20	2.5	20	90	0	75	33	13	31	21	1.92
8119--8186	20	3.5	20	97	2	129	33	26	25	14	1.94
8217--8270	14	3.5	14	75	22	54	11	22	20	46	1.82
8199--8269	33	2.2	33	81	0	79	19	21	21	38	1.94
8384--8420	14	2.6	14	86	0	56	48	21	0	29	1.50
10295--10337	20	2.2	18	84	15	59	39	23	18	18	1.92
10301--10338	20	2.0	20	94	5	69	34	26	18	21	1.96
10303--10350	19	2.5	20	82	3	53	39	22	18	18	1.92
10339--10396	14	3.9	14	75	16	53	48	20	17	13	1.81
10323--10412	32	2.8	32	82	3	108	46	22	16	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10408--10528	19	6.6	19	78	12	101	14	21	21	42	1.87
10997--11041	18	2.5	18	88	0	72	13	15	44	26	1.83
12360--12433	20	3.8	20	81	1	69	43	22	17	16	1.88
12647--12690	22	2.0	22	95	0	79	22	15	40	20	1.90
12724--12760	17	2.2	17	95	0	65	13	0	24	62	1.31
12812--12907	20	4.7	21	72	12	74	21	16	22	38	1.93
12812--12909	41	2.4	41	83	6	135	21	16	22	39	1.92
12832--12927	41	2.3	41	78	7	106	20	19	22	36	1.95
20449--20491	20	2.2	20	86	0	59	32	13	20	32	1.92
20746--20784	10	4.0	10	80	6	53	17	41	23	17	1.91
20832--20883	18	2.9	18	91	0	86	17	40	21	21	1.91
22003--22045	20	2.0	20	86	8	59	25	32	2	39	1.69
26274--26314	20	2.0	20	85	9	55	51	2	2	43	1.28
28616--28676	23	2.7	23	81	0	86	27	27	24	19	1.99
29329--29390	23	2.8	22	90	4	72	35	20	6	37	1.79
29339--29390	23	2.3	23	100	0	104	36	21	7	34	1.82
30202--30239	20	1.9	20	94	0	67	26	23	18	31	1.97
39933--40128	98	2.0	98	100	0	392	37	13	10	38	1.78
46269--46302	2	17.0	2	100	0	68	50	0	0	50	1.00
48172--48203	7	4.6	7	96	0	55	53	15	15	15	1.74
51276--51337	20	3.0	20	75	11	63	67	0	3	29	1.06
54942--54984	20	2.1	21	87	12	63	44	4	0	51	1.22

Tables:   1

The End!