Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000668.1 Hibiscus syriacus cultivar Beakdansim tig00001300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 188710
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:6251 original size:24 final size:24
Alignment explanation
Indices: 6224--6312 Score: 79
Period size: 24 Copynumber: 3.7 Consensus size: 24
6214 TATATCAAAA
* *
6224 ATCAAAACATAATTCAAGTCAAGT
1 ATCATAACAGAATTCAAGTCAAGT
* * *
6248 ATCATATCAGAATTCAGGTCATGT
1 ATCATAACAGAATTCAAGTCAAGT
* * * * *
6272 ATCAGATCAGAATCCAGGTCAGGT
1 ATCATAACAGAATTCAAGTCAAGT
*
6296 ATCATAACAAAATTCAA
1 ATCATAACAGAATTCAA
6313 ATTTGAAATC
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (24 bp):
ATCATAACAGAATTCAAGTCAAGT
Found at i:7462 original size:18 final size:18
Alignment explanation
Indices: 7439--7477 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7429 CTTCCGTCTG
*
7439 ATCTTATTATTAAATTCA
1 ATCTTATCATTAAATTCA
* *
7457 ATCTTATCATTTATTTCA
1 ATCTTATCATTAAATTCA
7475 ATC
1 ATC
7478 CTTTCGAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (18 bp):
ATCTTATCATTAAATTCA
Found at i:8814 original size:18 final size:18
Alignment explanation
Indices: 8791--8827 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8781 GCCGGTCAAT
8791 GGTCAACGGGTCAGGTCG
1 GGTCAACGGGTCAGGTCG
*
8809 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCAGGTCG
8827 G
1 G
8828 TCGGGTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.22, G:0.49, T:0.16
Consensus pattern (18 bp):
GGTCAACGGGTCAGGTCG
Found at i:21675 original size:38 final size:38
Alignment explanation
Indices: 21624--21765 Score: 230
Period size: 38 Copynumber: 3.7 Consensus size: 38
21614 TTTACTCTTT
* *
21624 CATGTATGCTAAAGTCATGTGGACTCCTTGTAATTTTA
1 CATGTGTGCTAAAGTCGTGTGGACTCCTTGTAATTTTA
21662 CATGTGTGCTAAAGTCGTGTGGACTCCTTGTAATTTTA
1 CATGTGTGCTAAAGTCGTGTGGACTCCTTGTAATTTTA
**
21700 CATGTGTGCTAAAGTCGTGCAGACTCCTTGTAATTTTA
1 CATGTGTGCTAAAGTCGTGTGGACTCCTTGTAATTTTA
21738 CATGTGTGCTAAAGTCGTGCCTGGACTC
1 CATGTGTGCTAAAGTCGTG--TGGACTC
21766 TTTGAAATAT
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 91 0.95
40 5 0.05
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (38 bp):
CATGTGTGCTAAAGTCGTGTGGACTCCTTGTAATTTTA
Found at i:28429 original size:21 final size:21
Alignment explanation
Indices: 28375--28456 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
28365 ATTTCGCGTT
28375 GTTGAAAATCGCGTTGCGAT-
1 GTTGAAAATCGCGTTGCGATA
* ** **
28395 TTTTCATTTCGCGTTGCGATA
1 GTTGAAAATCGCGTTGCGATA
28416 GTTGAAAATCGCGTTGCGATA
1 GTTGAAAATCGCGTTGCGATA
*
28437 GTTGAAAATCACGTTGCGAT
1 GTTGAAAATCGCGTTGCGAT
28457 TTTCCATTTC
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
20 15 0.30
21 35 0.70
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (21 bp):
GTTGAAAATCGCGTTGCGATA
Found at i:28597 original size:6 final size:6
Alignment explanation
Indices: 28586--28622 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
28576 GACACGTATT
28586 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
28623 GACGGACGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.35, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:35079 original size:21 final size:21
Alignment explanation
Indices: 35053--35092 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
35043 CCCCCTTTGA
*
35053 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
35074 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
35093 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:38751 original size:6 final size:6
Alignment explanation
Indices: 38740--38776 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
38730 TCGTCTCGTC
38740 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
38777 AATACGTGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.16, G:0.49, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:38948 original size:21 final size:21
Alignment explanation
Indices: 38923--38991 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
38913 ACAACTGCAG
38923 ACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGATTTTCA
* ** **
38944 ACTATCGCAACGCAAAATGGA
1 ACTATCGCAACGCGATTTTCA
* *
38965 A-AAACGCAACGCGATTTTCA
1 ACTATCGCAACGCGATTTTCA
38985 ACTATCG
1 ACTATCG
38992 TAATGCGAAA
Statistics
Matches: 33, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (21 bp):
ACTATCGCAACGCGATTTTCA
Found at i:41106 original size:2 final size:2
Alignment explanation
Indices: 41099--41138 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
41089 ACAACGAGCC
41099 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41139 GACATTCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:46935 original size:31 final size:31
Alignment explanation
Indices: 46897--47052 Score: 217
Period size: 31 Copynumber: 5.0 Consensus size: 31
46887 CCCGAAGGAC
* *
46897 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
46928 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
* *
46959 CAGTCCGTATGTTCCGAAGAACATAGGTAAT
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
*
46990 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
47021 CAGTCCATATG-TCCAGAAGAACATAGGTAAA
1 CAGTCCATATGTTCC-GAAGAACATAGGTAAA
47052 C
1 C
47053 CCTCGACCCT
Statistics
Matches: 111, Mismatches: 12, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
30 2 0.02
31 108 0.97
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:46994 original size:62 final size:62
Alignment explanation
Indices: 46897--47050 Score: 249
Period size: 62 Copynumber: 2.5 Consensus size: 62
46887 CCCGAAGGAC
* *
46897 CAGTCCATA-GATTCCGAAGAACCTAGGTAATCAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATG-TTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
*
46959 CAGTCCGTATGTTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
47021 CAGTCCATATG-TCCAGAAGAACATAGGTAA
1 CAGTCCATATGTTCC-GAAGAACATAGGTAA
47051 ACCCTCGACC
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
61 3 0.03
62 82 0.95
63 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (62 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:47256 original size:23 final size:24
Alignment explanation
Indices: 47230--47276 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
47220 ATATACTTGT
*
47230 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
47253 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
47277 CATGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:47905 original size:21 final size:21
Alignment explanation
Indices: 47875--47919 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
47865 ATTCTGTCGT
* *
47875 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
47896 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
47917 TTG
1 TTG
47920 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:50719 original size:31 final size:31
Alignment explanation
Indices: 50681--50836 Score: 217
Period size: 31 Copynumber: 5.0 Consensus size: 31
50671 CCCGAAGGAC
* *
50681 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
50712 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
* *
50743 CAGTCCGTATGTTCCGAAGAACATAGGTAAT
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
*
50774 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
50805 CAGTCCATATG-TCCAGAAGAACATAGGTAAA
1 CAGTCCATATGTTCC-GAAGAACATAGGTAAA
50836 C
1 C
50837 CCTCGACCCT
Statistics
Matches: 111, Mismatches: 12, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
30 2 0.02
31 108 0.97
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:50778 original size:62 final size:62
Alignment explanation
Indices: 50681--50834 Score: 249
Period size: 62 Copynumber: 2.5 Consensus size: 62
50671 CCCGAAGGAC
* *
50681 CAGTCCATA-GATTCCGAAGAACCTAGGTAATCAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATG-TTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
*
50743 CAGTCCGTATGTTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
50805 CAGTCCATATG-TCCAGAAGAACATAGGTAA
1 CAGTCCATATGTTCC-GAAGAACATAGGTAA
50835 ACCCTCGACC
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
61 3 0.03
62 82 0.95
63 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (62 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAATCAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:51040 original size:23 final size:24
Alignment explanation
Indices: 51014--51060 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
51004 ATATACTTGT
*
51014 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
51037 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
51061 CATGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:51690 original size:21 final size:21
Alignment explanation
Indices: 51660--51704 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
51650 ATTCTGTCGT
* *
51660 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
51681 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
51702 TTG
1 TTG
51705 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:56980 original size:58 final size:57
Alignment explanation
Indices: 56907--57080 Score: 206
Period size: 57 Copynumber: 3.0 Consensus size: 57
56897 AATTATTACA
* * *
56907 TTTTAAGAAATATTTACGAAACTATCACCCTTTTAAAAATATTTACAAAAGTAACACCC
1 TTTTAA-AAATATTTACGAAAATAACACCCTTTTAAAAATAATTACAAAA-TAACACCC
* * * * ** *
56966 TTTTAAAAATATTTACAAAAATAACA-CATTTTCAAAATAATTATGAAAATTGCAGCC
1 TTTTAAAAATATTTACGAAAATAACACCCTTTTAAAAATAATTA-CAAAATAACACCC
*
57023 TTTTAAAAATAATTACGAAAATAACACCCTTTTAAAAATAATTACAAAACTAACACCC
1 TTTTAAAAATATTTACGAAAATAACACCCTTTTAAAAATAATTACAAAA-TAACACCC
57081 GGCCAGCGGG
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
57 47 0.50
58 41 0.44
59 6 0.06
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.31
Consensus pattern (57 bp):
TTTTAAAAATATTTACGAAAATAACACCCTTTTAAAAATAATTACAAAATAACACCC
Found at i:57014 original size:28 final size:29
Alignment explanation
Indices: 56907--57080 Score: 192
Period size: 29 Copynumber: 6.0 Consensus size: 29
56897 AATTATTACA
* * *
56907 TTTTAAGAAATATTTACGAAACTATCACCC
1 TTTTAA-AAATAATTACGAAAATAACACCC
*
56937 TTTTAAAAATATTTAC-AAAAGTAACACCC
1 TTTTAAAAATAATTACGAAAA-TAACACCC
* * *
56966 TTTTAAAAATATTTACAAAAATAACA-CA
1 TTTTAAAAATAATTACGAAAATAACACCC
* * ** *
56994 TTTTCAAAATAATTATGAAAATTGCAGCC
1 TTTTAAAAATAATTACGAAAATAACACCC
57023 TTTTAAAAATAATTACGAAAATAACACCC
1 TTTTAAAAATAATTACGAAAATAACACCC
57052 TTTTAAAAATAATTAC-AAAACTAACACCC
1 TTTTAAAAATAATTACGAAAA-TAACACCC
57081 GGCCAGCGGG
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
28 28 0.22
29 87 0.70
30 10 0.08
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.31
Consensus pattern (29 bp):
TTTTAAAAATAATTACGAAAATAACACCC
Found at i:63773 original size:43 final size:43
Alignment explanation
Indices: 63725--63817 Score: 177
Period size: 43 Copynumber: 2.2 Consensus size: 43
63715 AACGAAGTTG
63725 GTTTGCTTCAACCTCAGTCTTGCAACATTTTAACTTAATTTGT
1 GTTTGCTTCAACCTCAGTCTTGCAACATTTTAACTTAATTTGT
*
63768 GTTTGCTTCAACCTCAGTCTTGCGACATTTTAACTTAATTTGT
1 GTTTGCTTCAACCTCAGTCTTGCAACATTTTAACTTAATTTGT
63811 GTTTGCT
1 GTTTGCT
63818 CTGCTTTTGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (43 bp):
GTTTGCTTCAACCTCAGTCTTGCAACATTTTAACTTAATTTGT
Found at i:67559 original size:32 final size:32
Alignment explanation
Indices: 67515--67577 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
67505 GCTTTCTTCT
67515 TTATTATAACTATAGT-TACTATATACATTTTA
1 TTATTATAACTATA-TATACTATATACATTTTA
* * *
67547 TTATTATTACTATATATTCTATATACCTTTT
1 TTATTATAACTATATATACTATATACATTTT
67578 TAACATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 1 0.04
32 26 0.96
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (32 bp):
TTATTATAACTATATATACTATATACATTTTA
Found at i:67649 original size:25 final size:26
Alignment explanation
Indices: 67611--67663 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
67601 TATCTATTTC
* *
67611 TTTTATTTTGCTTTATTTTATTTGTT
1 TTTTATTTTGCTTTATTATATTCGTT
67637 TTTTATTTT-CTTTATTATATTCGTT
1 TTTTATTTTGCTTTATTATATTCGTT
67662 TT
1 TT
67664 CACTTCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.75
Consensus pattern (26 bp):
TTTTATTTTGCTTTATTATATTCGTT
Found at i:68596 original size:10 final size:10
Alignment explanation
Indices: 68581--68614 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
68571 TTCATTTACC
68581 ATTTATTTTT
1 ATTTATTTTT
68591 ATTTATTTTT
1 ATTTATTTTT
* *
68601 ATCTATTTCT
1 ATTTATTTTT
68611 ATTT
1 ATTT
68615 TACTAACGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:79051 original size:105 final size:105
Alignment explanation
Indices: 78865--79658 Score: 1279
Period size: 105 Copynumber: 7.7 Consensus size: 105
78855 AGGTTTTACC
78865 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
78930 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
78970 CAGGGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
79035 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
79075 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
79140 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
* *
79180 CAGAGCCAATTTCAACTTCACAACGAAAGATATTGGACTCTAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
79245 ACGAAGGGACCGCTAGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
79285 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
79350 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
* *
79390 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
* * * *
79455 ACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACGAAC-ATTTCTCAATTT
* * *
79495 CAGAGCC-A----AACTTCACAACGAAGAATATTGGACTTCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
* * * *
79555 ACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACGAAC-ATTTCTCAATTT
* * * *
79595 CAGAGCC-A----AACTTCACAACGAAGAATATTGGACTCTAGACAACGCAAGTCCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
79655 ACGA
66 ACGA
79659 TGGATATCCA
Statistics
Matches: 669, Mismatches: 19, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
100 152 0.23
104 4 0.01
105 513 0.77
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
Found at i:81279 original size:16 final size:15
Alignment explanation
Indices: 81254--81283 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81244 TTACCCTTTA
81254 TATTTATATATTTTT
1 TATTTATATATTTTT
81269 TATTATATATATTTT
1 TATT-TATATATTTT
81284 CCTTTTTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTATATATTTTT
Found at i:81335 original size:16 final size:18
Alignment explanation
Indices: 81316--81348 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81306 CACTCTATAC
81316 TATAT-TAT-TATTTTTG
1 TATATATATATATTTTTG
81332 TATATATATATATTTTT
1 TATATATATATATTTTT
81349 TCCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 3 0.20
18 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TATATATATATATTTTTG
Found at i:81345 original size:21 final size:20
Alignment explanation
Indices: 81311--81349 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81301 TTATTCACTC
81311 TATACTATATTATTATTTTTG
1 TATACTATATTATT-TTTTTG
81332 TATA-TATATATATTTTTT
1 TATACTATAT-TATTTTTT
81350 CCTTTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (20 bp):
TATACTATATTATTTTTTTG
Found at i:82049 original size:32 final size:32
Alignment explanation
Indices: 82005--82067 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
81995 GCTTTCTTCT
82005 TTATTATAACTATAGT-TACTATATACATTTTA
1 TTATTATAACTATA-TATACTATATACATTTTA
* * *
82037 TTATTATTACTATATATTCTATATACCTTTT
1 TTATTATAACTATATATACTATATACATTTT
82068 TAACATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 1 0.04
32 26 0.96
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (32 bp):
TTATTATAACTATATATACTATATACATTTTA
Found at i:99861 original size:21 final size:21
Alignment explanation
Indices: 99837--99877 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
99827 CTCTACAAGT
*
99837 TCTCAGGTTACAGAAAAGATG
1 TCTCAGGTGACAGAAAAGATG
* *
99858 TCTCTGGTGACAGAAGAGAT
1 TCTCAGGTGACAGAAAAGAT
99878 CAAAACCAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (21 bp):
TCTCAGGTGACAGAAAAGATG
Found at i:110309 original size:44 final size:44
Alignment explanation
Indices: 110241--110328 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
110231 TTAATTAATA
110241 CATAATATCATAAAATATTATTTCTTTTCCTTCATCTTTCTCGT
1 CATAATATCATAAAATATTATTTCTTTTCCTTCATCTTTCTCGT
*
110285 CATAATATCATAAAATATTTTTTCTTTTCCTTCATCTTTCTCGT
1 CATAATATCATAAAATATTATTTCTTTTCCTTCATCTTTCTCGT
110329 GGGCCAACGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.26, C:0.20, G:0.02, T:0.51
Consensus pattern (44 bp):
CATAATATCATAAAATATTATTTCTTTTCCTTCATCTTTCTCGT
Found at i:113180 original size:27 final size:27
Alignment explanation
Indices: 113150--113203 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
113140 AACATAAAAT
113150 ATAATATTTTATTTATATATAACATTC
1 ATAATATTTTATTTATATATAACATTC
113177 ATAATATTTTATTTATATATAACATTC
1 ATAATATTTTATTTATATATAACATTC
113204 CAACGGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (27 bp):
ATAATATTTTATTTATATATAACATTC
Found at i:113257 original size:25 final size:26
Alignment explanation
Indices: 113215--113265 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
113205 AACGGATTTT
**
113215 AAATTTTCCGTCCTTAATCTTCTGAC
1 AAATTTTCCGTCAGTAATCTTCTGAC
113241 AAATTTT-CGTCAGTAATCTTCTGAC
1 AAATTTTCCGTCAGTAATCTTCTGAC
113266 GACTTACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.41
Consensus pattern (26 bp):
AAATTTTCCGTCAGTAATCTTCTGAC
Found at i:115708 original size:14 final size:14
Alignment explanation
Indices: 115691--115724 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
115681 TTTTTTATCG
*
115691 TTATTTTATTATTA
1 TTATTATATTATTA
115705 TTATTATATTATTA
1 TTATTATATTATTA
*
115719 ATATTA
1 TTATTA
115725 CATATTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTATATTATTA
Found at i:115711 original size:17 final size:17
Alignment explanation
Indices: 115691--115724 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
115681 TTTTTTATCG
* *
115691 TTATTTTATTATTATTA
1 TTATATTATTAATATTA
115708 TTATATTATTAATATTA
1 TTATATTATTAATATTA
115725 CATATTACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTATTAATATTA
Found at i:115826 original size:25 final size:25
Alignment explanation
Indices: 115797--115845 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
115787 CCCAACCCAT
115797 CAGATTAGGGTTTCAAACCCTAAAC
1 CAGATTAGGGTTTCAAACCCTAAAC
115822 CAGATTAGGGTTTCAAACCCTAAA
1 CAGATTAGGGTTTCAAACCCTAAA
115846 TGTTCCAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (25 bp):
CAGATTAGGGTTTCAAACCCTAAAC
Found at i:123059 original size:4 final size:4
Alignment explanation
Indices: 123050--123091 Score: 54
Period size: 4 Copynumber: 11.2 Consensus size: 4
123040 GATCGAGAAA
*
123050 ACAT ACAT ACAT ACAT ATAT AC-- ACAT ACAT ACAT A-AT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
123092 AAATTTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 2 0.06
3 3 0.09
4 28 0.85
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:123077 original size:18 final size:17
Alignment explanation
Indices: 123054--123089 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
123044 GAGAAAACAT
123054 ACATACATACATATATAC
1 ACATACATACATA-ATAC
123072 ACATACATACATAATAC
1 ACATACATACATAATAC
123089 A
1 A
123090 TAAAATTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (17 bp):
ACATACATACATAATAC
Found at i:123743 original size:35 final size:36
Alignment explanation
Indices: 123715--123833 Score: 113
Period size: 36 Copynumber: 3.4 Consensus size: 36
123705 ACAAAGTTGA
*
123715 TCTCACTTGAGATC-GTTTCTC-AAAAACAAACTTTG
1 TCTCACTTGAGA-CAATTTCTCTAAAAACAAACTTTG
* *
123750 TCTCGCTTGAGACAATTTCTCTAAAAACAAATTTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
* * * *
123786 TCTCATTTGAGACTATATCT-T-AAAGCAAA-TTTCG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTT-G
*
123820 TCTCGCTTGAGACA
1 TCTCACTTGAGACA
123834 TCATTTTCTC
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
33 3 0.04
34 20 0.29
35 18 0.26
36 29 0.41
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (36 bp):
TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
Found at i:123786 original size:36 final size:36
Alignment explanation
Indices: 123730--123833 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 36
123720 CTTGAGATCG
*
123730 TTTCTC-AAAAACAAACTTTGTCTCGCTTGAGACAA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
** *
123765 TTTCTCTAAAAACAAATTTTGTCTCATTTGAGACTA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
* * *
123801 TATCT-T-AAAGCAAATTTCGTCTCGCTTGAGACA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACA
123834 TCATTTTCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 22 0.38
35 7 0.12
36 29 0.50
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (36 bp):
TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
Found at i:124210 original size:58 final size:58
Alignment explanation
Indices: 124082--124246 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
124072 GACAATTTCT
* * * *
124082 TTTGAGAAAAAAATCTTTGAGTTTGCTCCTCTTG-AAAAAGTCTTTGAGTTTGTTCCTC
1 TTTG-GAAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAAATCTTCGAGTTTGTTCCTC
** *
124140 TTTTAAAAAAAAATCTTTGAGTTTGTTCCTTTTGAATAAAAATCTTGGAGTTTGTT-C-C
1 -TTTGGAAAAAAATCTTTGAGTTTGTTCCTTTTGAA-AAAAATCTTCGAGTTTGTTCCTC
* * *
124198 TTTGGAATAAAAATCTGTGAG-TTGTTTCGTTTGAAAAAAATCTTCGAGT
1 TTTGGAA-AAAAATCTTTGAGTTTGTTCCTTTTGAAAAAAATCTTCGAGT
124247 CTATTTACTT
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
56 13 0.14
57 17 0.19
58 39 0.43
59 5 0.05
60 17 0.19
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.42
Consensus pattern (58 bp):
TTTGGAAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAAATCTTCGAGTTTGTTCCTC
Found at i:124330 original size:30 final size:30
Alignment explanation
Indices: 124296--124359 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
124286 ATTGTGTGAA
*
124296 AAAAATCTTTGAGATTGTTTCTTTTGAAAC
1 AAAAATCTTTGAGATTGTTTCTTTGGAAAC
*
124326 AAAAATCTTTGAGTTTGTTTCTTTGGAAAC
1 AAAAATCTTTGAGATTGTTTCTTTGGAAAC
124356 AAAA
1 AAAA
124360 TTTTGTCTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (30 bp):
AAAAATCTTTGAGATTGTTTCTTTGGAAAC
Found at i:124360 original size:29 final size:28
Alignment explanation
Indices: 124077--124364 Score: 149
Period size: 29 Copynumber: 9.8 Consensus size: 28
124067 TTAAAGACAA
124077 TTTCTTTTGAGAAAAAAATCTTTGAGTTTG
1 TTTC-TTTG-GAAAAAAATCTTTGAGTTTG
* * *
124107 CTCCTCTT-G-AAAAAGTCTTTGAGTTTG
1 TTTCT-TTGGAAAAAAATCTTTGAGTTTG
**
124134 TTCCTCTTTTAAAAAAAAATCTTTGAGTTTG
1 TT--TC-TTTGGAAAAAAATCTTTGAGTTTG
* * *
124165 TTCCTTTTGAATAAAAATCTTGGAGTTTG
1 TTTCTTTGGAA-AAAAATCTTTGAGTTTG
* *
124194 TTCCTTTGGAATAAAAATCTGTGAG-TTG
1 TTTCTTTGGAA-AAAAATCTTTGAGTTTG
* * *
124222 TTTCGTTT-GAAAAAAATCTTCGAGTCTA
1 TTTC-TTTGGAAAAAAATCTTTGAGTTTG
* **
124250 TTTACTTT-GAAACAAAGT-TTTGTCTCTCTTG
1 TTT-CTTTGGAAA-AAAATCTTTG--AGT-TTG
*** *
124281 AGACAATTGTGTGAAAAAAATCTTTGAGATTG
1 TTTC--TT-TG-GAAAAAAATCTTTGAGTTTG
*
124313 TTTCTTTTGAAACAAAAATCTTTGAGTTTG
1 TTTC-TTTGGAA-AAAAATCTTTGAGTTTG
124343 TTTCTTTGGAAACAAAAT-TTTG
1 TTTCTTTGGAAA-AAAATCTTTG
124365 TCTCTTGAAA
Statistics
Matches: 197, Mismatches: 39, Indels: 46
0.70 0.14 0.16
Matches are distributed among these distances:
27 29 0.15
28 34 0.17
29 64 0.32
30 29 0.15
31 22 0.11
32 6 0.03
33 1 0.01
34 4 0.02
35 8 0.04
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (28 bp):
TTTCTTTGGAAAAAAATCTTTGAGTTTG
Found at i:124412 original size:66 final size:64
Alignment explanation
Indices: 124313--124496 Score: 205
Period size: 66 Copynumber: 2.9 Consensus size: 64
124303 TTTGAGATTG
* *
124313 TTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTCTTGAAAC-A
1 TTTCTCTTGAAA-AAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTCTTAAAACAA
* ** * *
124377 TTTCTCTT-AAAACAAGATCATCTTTGAGTTTGTTTCTCTGGAAACAAGGTTTTATCCCTTAAAA
1 TTTCTCTTGAAAA-AA-A--ATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTCTTAAAA
124441 CAA
62 CAA
* * *
124444 TTTCTTTTGAAGAAAAATC--TGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTC
1 TTTCTCTTGAAAAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTC
124497 ACTAAGACAC
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
62 29 0.29
63 5 0.05
64 11 0.11
66 41 0.41
67 10 0.10
68 3 0.03
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (64 bp):
TTTCTCTTGAAAAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTCTTAAAACAA
Found at i:124695 original size:36 final size:35
Alignment explanation
Indices: 124655--124729 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
124645 TATTTCTTTG
* *
124655 GAAACAAAATTTACCATCTTTGA-ATCTGTTTCCCTT
1 GAAACAAAA-TAAACATCTTTGAGATC-GTTTCCCTT
* *
124691 GAAACAGAATAAACATCTTTGAGATCGTTTCTCTT
1 GAAACAAAATAAACATCTTTGAGATCGTTTCCCTT
124726 GAAA
1 GAAA
124730 TGAATTTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 23 0.68
36 11 0.32
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (35 bp):
GAAACAAAATAAACATCTTTGAGATCGTTTCCCTT
Found at i:125051 original size:28 final size:28
Alignment explanation
Indices: 125001--125054 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
124991 TCAAAATCCA
* *
125001 ATCTTTGAGTTTGTTTCTATTGAAACAC
1 ATCTTTGAGTTGGTTCCTATTGAAACAC
125029 ATCTTTGAGTTGGTCTCCT-TTGAAAC
1 ATCTTTGAGTTGGT-TCCTATTGAAAC
125055 CATTATCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 20 0.87
29 3 0.13
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (28 bp):
ATCTTTGAGTTGGTTCCTATTGAAACAC
Found at i:125260 original size:46 final size:45
Alignment explanation
Indices: 125168--125378 Score: 192
Period size: 46 Copynumber: 4.9 Consensus size: 45
125158 CCAGATCTCT
* *
125168 TCATCACGTAGGAGCCGTGTCA--ACCATAGATAACCAGCCGTCC
1 TCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAGCCGTCC
* **
125211 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGCCGTCC
1 TCATCACGTAGGAACCGTGTCATCACC-TTAGATAACCAGCCGTCC
* * * *
125257 TCATCAGGTAGGAACCGTGTCATC-CC-CAG---ACCAGATC-TCT
1 TCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAG-CCGTCC
* **
125297 TCATCACGTATGAGTCGTGTCA-C-CC-TAGATAACCAGCCGTCC
1 TCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAGCCGTCC
* *
125339 TCATCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAG
1 TCATCACGTAGGAACCGTGTCATCACC-TTAGATAACCAG
125379 AACTCTTCAT
Statistics
Matches: 133, Mismatches: 23, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
39 5 0.04
40 24 0.18
41 2 0.02
42 25 0.19
43 23 0.17
44 2 0.02
45 5 0.04
46 47 0.35
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (45 bp):
TCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAGCCGTCC
Found at i:125343 original size:82 final size:86
Alignment explanation
Indices: 125066--125406 Score: 251
Period size: 86 Copynumber: 4.0 Consensus size: 86
125056 ATTATCCTAG
* * * *
125066 AGATAACCAGCCGTCCTCGTCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
1 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTCATCACC-TCAGA-AGCCAGAACTCTTCA
**
125131 TTGCGTATGAGTCGTGTCATTTCCC-
64 TCACGTATGAGTCGTGTCA---CCCT
* * * * * *
125156 -G---ACCAGATC-TCTTCATCACGTAGGAGCCGTGTCA--ACCAT-AGATAACCAG-CCGTCCT
1 AGATAACCAG-CCGTCCTCATCACGTAGGAACCGTGTCATCACC-TCAGA-AGCCAGAAC-TCTT
* ** *
125212 CATCACGTAGGAACCGTGTTATCACCTTT
62 CATCACGTATGAGTCGTG---TCACC-CT
** * *
125241 AGATGGCCAGCCGTCCTCATCAGGTAGGAACCGTGTCATC-CC-CAG-A-CCAGATCTCTTCATC
1 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTCATCACCTCAGAAGCCAGAACTCTTCATC
125302 ACGTATGAGTCGTGTCACCCT
66 ACGTATGAGTCGTGTCACCCT
* *
125323 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGAACTCTTCA
1 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTCATCACC-TCAGA-AGCCAGAACTCTTCA
125388 TCACGTATGAGTCGTGTCA
64 TCACGTATGAGTCGTGTCA
125407 TTCCCCGACC
Statistics
Matches: 196, Mismatches: 33, Indels: 46
0.71 0.12 0.17
Matches are distributed among these distances:
82 38 0.19
83 33 0.17
84 4 0.02
85 2 0.01
86 52 0.27
87 4 0.02
88 32 0.16
89 29 0.15
90 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (86 bp):
AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTCATCACCTCAGAAGCCAGAACTCTTCATC
ACGTATGAGTCGTGTCACCCT
Found at i:125389 original size:128 final size:128
Alignment explanation
Indices: 125066--125448 Score: 583
Period size: 128 Copynumber: 3.0 Consensus size: 128
125056 ATTATCCTAG
*
125066 AGATAACCAGCCGTCCTCGTCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
1 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
* *
125131 T-TGCGTATGAGTCGTGTCATTTCCCGACCAGATCTCTTCATCACGTAGGAGCCGTGTCAACCAT
66 TCAG-GTATGAGTCGTGTCATTCCCCGACCAGATCTCTTCATCACGTAGGAGCCGTGTC-ACCAT
* *
125195 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAG-CCGTCCTC
1 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAAC-TCTTC
* ** * * *
125259 ATCAGGTAGGAACCGTGTCA-TCCCCAGACCAGATCTCTTCATCACGTATGAGTCGTGTCACCCT
65 ATCAGGTATGAGTCGTGTCATTCCCC-GACCAGATCTCTTCATCACGTAGGAGCCGTGTCACCAT
*
125323 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGAACTCTTCA
1 AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
* *
125388 TCACGTATGAGTCGTGTCATTCCCCGACCAGAACTCTTCATCACGTAGGAGCCGTGTCACC
66 TCAGGTATGAGTCGTGTCATTCCCCGACCAGATCTCTTCATCACGTAGGAGCCGTGTCACC
125449 TTTAGACGAC
Statistics
Matches: 228, Mismatches: 21, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
128 117 0.51
129 110 0.48
130 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (128 bp):
AGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
TCAGGTATGAGTCGTGTCATTCCCCGACCAGATCTCTTCATCACGTAGGAGCCGTGTCACCAT
Found at i:125390 original size:46 final size:46
Alignment explanation
Indices: 125085--125394 Score: 169
Period size: 46 Copynumber: 7.2 Consensus size: 46
125075 GCCGTCCTCG
* *
125085 TCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACCTCTTCA
** * ** **** *
125131 TTGCGTATGAGTCGTG---TCA--TTTCCCGA-CCAGATCTCTTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACCTCTTCA
* * * * *
125171 TCACGTAGGAGCCGTGTCA--ACC-ATAGATAACCAG-CCGTCCTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACC-TCTTCA
* *
125214 TCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAG-CCGTCCTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACC-TCTTCA
* * * *
125260 TCAGGTAGGAACCGTGTCATC-CC--CAG--A-CCAGATCTCTTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACCTCTTCA
* ** * * *
125300 TCACGTATGAGTCGTG---TCACC-CTAGATAACCAG-CCGTCCTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACC-TCTTCA
*
125342 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGAACTCTTCA
1 TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACCTCTTCA
125388 TCACGTA
1 TCACGTA
125395 TGAGTCGTGT
Statistics
Matches: 195, Mismatches: 47, Indels: 44
0.68 0.16 0.15
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 2 0.01
40 45 0.23
41 7 0.04
42 25 0.13
43 31 0.16
45 10 0.05
46 70 0.36
47 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
TCACGTAGGAACCGTGTTATCACCTTTAGATAGCCAGACCTCTTCA
Found at i:125473 original size:43 final size:43
Alignment explanation
Indices: 125085--125488 Score: 176
Period size: 40 Copynumber: 9.4 Consensus size: 43
125075 GCCGTCCTCG
* * *
125085 TCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCA
1 TCACGTAGGAGCCGTG---TCACCTTTAGACGACCAGAACTCTTCA
** * * ** *
125131 TTGCGTATGAGTCGTGTCA--TTT-CCCGACCAGATCTCTTCA
1 TCACGTAGGAGCCGTGTCACCTTTAGACGACCAGAACTCTTCA
* ** * *
125171 TCACGTAGGAGCCGTGTCAACC-ATAGATAACCAG-CCGTCCTCA
1 TCACGTAGGAGCCGTGTC-ACCTTTAGACGACCAGAAC-TCTTCA
* * * * *
125214 TCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAG-CCGTCCTCA
1 TCACGTAGGAGCCGTG---TCACCTTTAGACGACCAGAAC-TCTTCA
* * ** *
125260 TCAGGTAGGAACCGTGTCATCC---CCA-GACCAGATCTCTTCA
1 TCACGTAGGAGCCGTGTCA-CCTTTAGACGACCAGAACTCTTCA
* * * ** * *
125300 TCACGTATGAGTCGTGTCACC-CTAGATAACCAG-CCGTCCTCA
1 TCACGTAGGAGCCGTGTCACCTTTAGACGACCAGAAC-TCTTCA
* *
125342 TCACGTAGGAACCGTGTTATCACCTTTAGA-TAGCCAGAACTCTTCA
1 TCACGTAGGAGCCGTG---TCACCTTTAGACGA-CCAGAACTCTTCA
* * ***
125388 TCACGTATGAGTCGTGTCA---TTCCCCGACCAGAACTCTTCA
1 TCACGTAGGAGCCGTGTCACCTTTAGACGACCAGAACTCTTCA
125428 TCACGTAGGAGCCGTGTCACCTTTAGACGACCCA-AACTCTTCA
1 TCACGTAGGAGCCGTGTCACCTTTAGACGA-CCAGAACTCTTCA
* *
125471 TCACGTATGAGCAGTGTC
1 TCACGTAGGAGCCGTGTC
125489 GTCCCCAACA
Statistics
Matches: 271, Mismatches: 61, Indels: 55
0.70 0.16 0.14
Matches are distributed among these distances:
39 2 0.01
40 84 0.31
41 9 0.03
42 25 0.09
43 64 0.24
44 5 0.02
45 9 0.03
46 72 0.27
47 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
TCACGTAGGAGCCGTGTCACCTTTAGACGACCAGAACTCTTCA
Found at i:125663 original size:14 final size:14
Alignment explanation
Indices: 125646--125679 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
125636 TTTTTTATCG
*
125646 TTATTTTATTATTA
1 TTATTATATTATTA
125660 TTATTATATTATTA
1 TTATTATATTATTA
*
125674 ATATTA
1 TTATTA
125680 CATATTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTATATTATTA
Found at i:125666 original size:17 final size:17
Alignment explanation
Indices: 125646--125679 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
125636 TTTTTTATCG
* *
125646 TTATTTTATTATTATTA
1 TTATATTATTAATATTA
125663 TTATATTATTAATATTA
1 TTATATTATTAATATTA
125680 CATATTACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTATTAATATTA
Found at i:125781 original size:25 final size:25
Alignment explanation
Indices: 125752--125800 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
125742 CCCAACCCAT
125752 CAGATTAGGGTTTCAAACCCTAAAC
1 CAGATTAGGGTTTCAAACCCTAAAC
125777 CAGATTAGGGTTTCAAACCCTAAA
1 CAGATTAGGGTTTCAAACCCTAAA
125801 TGTTCCAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (25 bp):
CAGATTAGGGTTTCAAACCCTAAAC
Found at i:130960 original size:15 final size:15
Alignment explanation
Indices: 130940--130978 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
130930 ACAATTTTTT
130940 TTTATATTTTTATGA
1 TTTATATTTTTATGA
130955 TTTATATTTTTATGA
1 TTTATATTTTTATGA
130970 TTTATATTT
1 TTTATATTT
130979 AATTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (15 bp):
TTTATATTTTTATGA
Found at i:130996 original size:21 final size:21
Alignment explanation
Indices: 130954--130996 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
130944 TATTTTTATG
* *
130954 ATTTATATTTTTATGATTTAT
1 ATTTATATTTTTATCATATAT
130975 ATTTA-ATTTTTATTCATATAT
1 ATTTATATTTTTA-TCATATAT
130996 A
1 A
130997 CTATGTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTATATTTTTATCATATAT
Found at i:147653 original size:6 final size:6
Alignment explanation
Indices: 147642--147675 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
147632 GCAGCAGCTT
147642 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCT
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCT
147676 CTATGTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
CTCTTC
Found at i:160584 original size:37 final size:36
Alignment explanation
Indices: 160525--160644 Score: 181
Period size: 35 Copynumber: 3.3 Consensus size: 36
160515 ATCCCATTAT
* *
160525 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
*
160561 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
160597 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
160632 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
160645 TTTGTTACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
35 35 0.45
36 13 0.17
37 29 0.38
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
Found at i:160600 original size:21 final size:21
Alignment explanation
Indices: 160576--160636 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
160566 TTCAAAGAAA
160576 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
160597 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
160611 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
160632 CATTT
1 CATTT
160637 TTTCAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:160653 original size:35 final size:35
Alignment explanation
Indices: 160527--160671 Score: 147
Period size: 35 Copynumber: 4.1 Consensus size: 35
160517 CCCATTATCA
* * *
160527 TTTTTCAACAAACATCTACCAAACTTTGAAAAAC-T
1 TTTTTCAA-AGACATTTACCAAACTTTGAAAACCAT
160562 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACCA-
1 -TTTTTCAAAG--ACATTTACCAAACTTTGAAAACCAT
160599 -TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
1 TTTTTCAAAG--ACATTTACCAAACTTTGAAAACCAT
**
160635 TTTTTCAAAG-TTTGTTACCAAAC-TTGAAAACCAT
1 TTTTTCAAAGACAT-TTACCAAACTTTGAAAACCAT
160669 TTT
1 TTT
160672 ACTACTTTCA
Statistics
Matches: 98, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
34 15 0.15
35 45 0.46
36 8 0.08
37 30 0.31
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (35 bp):
TTTTTCAAAGACATTTACCAAACTTTGAAAACCAT
Found at i:165201 original size:21 final size:21
Alignment explanation
Indices: 165177--165237 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
165167 TTCAAAGAAA
165177 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
165198 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
165212 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
165233 TATTT
1 CATTT
165238 TTCAAATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 9 0.30
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.33
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:165211 original size:35 final size:36
Alignment explanation
Indices: 165127--165243 Score: 184
Period size: 35 Copynumber: 3.3 Consensus size: 36
165117 TCCCATTATC
* *
165127 ATTTTTC-AACAAACATCTACCAAACTTTGAAAAACT
1 ATTTTTCAAAGAAACATTTACCAAACTTTG-AAAACT
*
165163 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACC
1 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACT
165199 A-TTTTCAAAGAAACATTTACCAAACTTTGAAAACT
1 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACT
165234 ATTTTTCAAA
1 ATTTTTCAAA
165244 TTGGTTACCA
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
35 34 0.45
36 21 0.28
37 20 0.27
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.32
Consensus pattern (36 bp):
ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACT
Found at i:167189 original size:25 final size:23
Alignment explanation
Indices: 167155--167210 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 23
167145 GATAATGGCT
167155 CTGAATCATTCAAAATATTTCTGTG
1 CTGAATCATTCAAAAT-TTT-TGTG
* *
167180 CTGAATCATTCAACATTTTTTTG
1 CTGAATCATTCAAAATTTTTGTG
167203 CTGAATCA
1 CTGAATCA
167211 GTCAGCATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 11 0.38
24 3 0.10
25 15 0.52
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (23 bp):
CTGAATCATTCAAAATTTTTGTG
Found at i:167204 original size:23 final size:24
Alignment explanation
Indices: 167155--167219 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 24
167145 GATAATGGCT
*
167155 CTGAATCATTCAAAATATTTCTGTG
1 CTGAATCATTCAACAT-TTTCTGTG
*
167180 CTGAATCATTCAACATTTT-TTTG
1 CTGAATCATTCAACATTTTCTGTG
* *
167203 CTGAATCAGTCAGCATT
1 CTGAATCATTCAACATT
167220 GAATCATTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 18 0.50
24 3 0.08
25 15 0.42
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (24 bp):
CTGAATCATTCAACATTTTCTGTG
Found at i:177493 original size:2 final size:2
Alignment explanation
Indices: 177488--177514 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
177478 AGCAAGTGTG
177488 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
177515 TTCATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:181780 original size:2 final size:2
Alignment explanation
Indices: 181767--181800 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
181757 AGATGTTCCG
*
181767 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
181801 AACTATCCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Done.