genome.fa.s6680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006680.1 Hibiscus syriacus cultivar Beakdansim tig00016571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  321219

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11516--11543	2	14.0	2	100	0	56	50	0	0	50	1.00
11592--11645	2	27.0	2	100	0	108	50	0	0	50	1.00
11450--11621	80	2.2	80	94	3	305	45	12	7	34	1.70
12505--12552	10	4.9	10	84	5	53	4	10	0	85	0.73
12515--12548	17	2.0	17	100	0	68	0	11	0	88	0.52
15546--15601	18	3.1	19	75	12	55	55	0	5	39	1.23
18513--18539	13	2.1	13	100	0	54	37	14	25	22	1.93
22187--23571	122	11.5	122	86	3	1824	44	9	16	30	1.79
22184--23571	485	2.9	483	89	2	1963	44	9	15	30	1.79
23660--23686	2	13.5	2	100	0	54	48	0	0	51	1.00
56743--56796	22	2.3	25	81	9	69	55	0	3	40	1.17
58808--59065	101	2.5	105	85	6	348	25	18	16	38	1.92
59233--59665	112	3.9	111	83	4	514	28	19	14	37	1.91
59115--59662	225	2.4	224	81	6	584	28	18	13	38	1.90
60081--60135	22	2.5	22	87	0	83	36	14	14	34	1.87
62364--62798	114	3.8	114	88	1	647	31	20	16	31	1.95
65283--65311	2	14.5	2	100	0	58	51	0	0	48	1.00
68267--68320	14	3.8	14	87	2	72	51	9	12	25	1.70
83467--83514	16	2.9	16	80	14	53	68	0	22	8	1.16
83451--83520	26	2.6	27	80	11	81	71	0	21	7	1.09
84832--85241	51	8.0	51	93	1	649	29	15	26	27	1.96
84948--85348	51	7.6	56	88	3	229	30	15	25	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85152--85350	55	3.6	55	80	8	208	30	16	23	30	1.96
85213--85374	55	2.9	55	82	4	166	30	15	22	31	1.95
98348--98391	5	8.4	5	90	9	70	20	36	25	18	1.95
98350--98391	16	2.6	16	100	0	84	19	38	23	19	1.93
98348--98391	11	4.2	10	91	8	70	20	36	25	18	1.95
111843--112165	159	2.0	158	87	1	459	29	14	21	33	1.94
122515--122558	22	2.0	22	86	8	63	36	11	4	47	1.60
124046--124098	22	2.4	22	100	0	106	16	20	20	41	1.90
132609--132646	16	2.4	16	91	4	60	60	2	0	36	1.11
140235--140278	22	2.0	22	83	16	56	36	13	4	45	1.64
145393--146318	122	7.6	121	82	7	1069	29	16	9	44	1.79
156375--158195	122	15.2	120	73	11	1118	31	15	9	43	1.79
157213--158195	122	8.2	121	84	4	1180	30	15	9	43	1.79
157718--157909	61	3.2	60	65	21	155	29	17	8	44	1.78
157236--158195	240	4.0	244	87	3	1311	30	15	9	43	1.80
157784--158545	411	1.9	412	97	0	1447	29	16	10	43	1.81
158024--158362	170	2.0	167	89	2	509	30	17	10	41	1.82
158194--158545	122	2.9	122	86	2	521	29	16	10	44	1.80
158830--159260	213	2.0	213	85	4	569	32	14	8	44	1.76
159043--159966	121	7.6	121	82	7	1049	29	16	9	44	1.79
158817--159937	457	2.4	466	86	6	1518	30	15	9	44	1.78
160636--161572	122	7.7	121	87	3	1286	30	15	9	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160636--161572	245	3.8	245	89	2	1377	30	15	9	44	1.78
163690--164209	105	5.0	105	91	1	795	33	26	17	22	1.96
165374--165416	18	2.5	17	85	7	61	25	4	2	67	1.22
165924--165957	2	17.0	2	93	0	59	47	0	0	52	1.00
167394--167440	23	2.0	25	87	8	71	25	0	2	72	0.96
181260--181297	16	2.4	16	91	4	60	60	2	0	36	1.11
181799--181849	16	3.2	16	80	0	57	60	29	3	5	1.38
193803--194654	122	7.0	122	84	4	1094	30	14	9	45	1.77
193803--194654	244	3.5	242	88	2	1224	30	14	9	45	1.77
199777--199970	56	3.4	56	92	4	300	19	21	25	34	1.97
209632--209689	24	2.6	22	76	12	64	55	0	0	44	0.99
219187--219226	18	2.2	18	100	0	80	37	10	37	15	1.80
220639--221565	122	7.7	122	84	4	1112	30	14	9	45	1.77
220662--221547	240	3.7	240	86	3	1189	30	15	9	44	1.78
222110--223035	122	7.7	120	82	6	1021	30	15	9	44	1.79
221897--222326	214	2.0	215	83	6	550	32	14	8	44	1.75
232218--232296	38	2.1	38	95	0	140	39	11	8	40	1.72
233672--233887	104	2.1	103	93	2	371	43	12	4	40	1.62
233691--233932	104	2.3	103	83	5	238	45	11	5	37	1.65
242184--242230	2	23.5	2	100	0	94	48	0	0	51	1.00
245566--245601	15	2.4	15	90	0	54	50	5	22	22	1.70
246604--246637	16	2.1	16	94	0	59	20	41	11	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247430--247469	21	1.9	21	94	0	71	32	27	15	25	1.95
247431--247639	64	3.2	65	79	7	194	33	24	15	26	1.95
247611--247659	19	2.6	19	84	9	57	24	30	18	26	1.98
253442--253521	24	3.5	22	78	14	92	22	26	23	27	2.00
253904--253942	20	1.9	21	89	5	62	61	2	2	33	1.23
254845--254905	21	2.9	21	97	0	113	32	29	14	22	1.94
254867--255075	64	3.2	65	79	7	203	33	24	15	26	1.95
255047--255095	19	2.6	19	84	9	57	24	30	18	26	1.98
256340--256409	24	3.0	24	73	12	65	32	25	22	18	1.97
256384--256474	25	3.7	25	86	1	130	31	23	20	24	1.98
256376--256482	25	4.4	25	81	6	114	33	23	20	22	1.97
256633--256669	16	2.2	17	95	4	67	51	18	0	29	1.47
263451--263481	2	15.5	2	100	0	62	51	0	0	48	1.00
263787--264706	122	7.6	121	83	6	1046	29	16	9	44	1.80
263787--264706	238	3.8	242	85	5	1237	29	16	9	44	1.80
267103--267156	2	27.0	2	100	0	108	50	0	0	50	1.00
280773--280814	20	2.1	20	90	0	66	57	0	2	40	1.12
293100--293138	14	2.7	14	84	15	53	15	5	0	79	0.90
299259--299318	21	2.9	21	92	0	93	30	0	6	63	1.20
311732--311776	22	2.0	22	87	8	65	8	64	15	11	1.49

Tables:   1

The End!