genome.fa.s6681.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006681.1 Hibiscus syriacus cultivar Beakdansim tig00016576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66641

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3782--3866	23	3.8	22	80	4	82	24	31	23	20	1.98
3783--3842	23	2.6	23	89	0	84	23	31	25	20	1.98
7972--8221	125	2.0	125	100	0	500	33	13	20	32	1.91
8531--8725	75	2.6	75	83	3	257	26	6	15	52	1.66
10349--10375	4	6.8	4	100	0	54	51	22	0	25	1.48
15690--15750	21	3.0	20	85	7	77	47	1	1	49	1.21
17420--17555	44	3.1	44	79	4	123	32	15	20	31	1.94
23423--23456	16	2.1	16	89	10	52	50	2	2	44	1.32
25530--25561	16	2.0	16	100	0	64	25	25	25	25	2.00
31535--31761	41	5.5	40	67	13	138	29	24	16	29	1.96
31461--31750	83	3.5	82	79	6	282	31	23	15	30	1.95
33001--33163	64	2.5	64	76	7	152	31	20	20	27	1.98
33946--34157	103	2.1	103	95	0	379	26	12	23	36	1.91
39743--39956	103	2.1	103	94	0	374	27	11	23	37	1.90
45659--45751	27	3.3	27	68	19	82	38	7	12	40	1.72
45621--45838	57	3.8	57	91	0	337	38	5	14	40	1.71
45686--45781	30	3.3	30	69	14	92	40	7	13	38	1.72
45918--45961	23	1.9	23	85	0	61	22	13	27	36	1.92
45958--46006	24	2.0	24	84	0	62	20	20	24	34	1.96
51881--51905	11	2.3	11	100	0	50	24	0	32	44	1.54
53739--53834	30	3.3	29	71	14	90	36	6	17	39	1.75
53731--53948	57	3.8	57	91	2	348	36	5	16	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53769--53918	27	5.3	27	66	23	103	34	5	17	42	1.72
54022--54094	23	3.2	22	78	5	83	19	24	21	34	1.96
58273--59279	507	2.0	507	100	0	2014	30	21	17	29	1.97
62812--62910	30	3.3	29	86	6	126	31	23	25	20	1.98
63183--63221	20	2.0	20	89	0	60	33	23	10	33	1.88
65053--65101	21	2.3	21	86	6	64	42	0	2	55	1.11
65069--65105	10	3.6	10	85	7	56	35	0	0	64	0.94
65063--65104	21	2.0	20	95	4	75	35	0	0	64	0.94
65063--65126	23	2.9	23	84	11	73	40	0	0	59	0.97
65765--66002	129	1.9	125	90	3	377	32	15	9	42	1.79

Tables:   1

The End!