genome.fa.s6682.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006682.1 Hibiscus syriacus cultivar Beakdansim tig00016577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123809

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10481--10515	16	2.1	17	94	5	63	34	17	0	48	1.47
12550--12636	34	2.6	34	98	0	165	59	0	0	40	0.97
13053--13090	12	3.2	12	92	0	67	7	15	50	26	1.72
13053--13107	24	2.3	24	90	0	83	12	14	47	25	1.80
13222--13253	13	2.5	13	100	0	64	15	15	53	15	1.74
13317--13341	6	4.2	6	100	0	50	0	64	16	20	1.30
20496--20530	18	1.9	18	94	0	61	65	0	0	34	0.93
20499--20566	30	2.2	30	84	7	84	63	1	1	33	1.13
20498--20571	9	7.8	9	71	15	51	63	1	1	33	1.11
30041--30080	17	2.4	17	86	0	53	32	2	2	62	1.22
30317--30439	60	2.1	58	80	6	131	38	9	13	38	1.78
30675--30790	60	1.9	60	96	0	214	42	15	7	34	1.76
33991--34063	28	2.6	28	97	2	139	26	4	6	63	1.38
36296--36350	14	4.0	14	88	2	58	49	0	0	50	1.00
36314--36356	2	21.5	2	100	0	86	48	0	0	51	1.00
42757--42842	39	2.3	38	82	11	99	51	2	0	46	1.13
42757--42858	39	2.7	39	79	10	97	49	1	0	49	1.12
42785--42870	39	2.2	38	80	10	93	51	1	0	47	1.08
42991--43036	19	2.4	19	89	7	67	47	2	0	50	1.13
46448--46527	38	2.1	39	88	2	117	15	22	8	53	1.68
51997--52038	2	21.0	2	100	0	84	50	0	0	50	1.00
66512--66561	23	2.2	23	82	7	57	78	8	10	4	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68208--68254	17	2.6	17	81	15	51	21	10	2	65	1.33
70271--70331	30	2.0	30	87	0	86	19	44	19	16	1.87
71194--71236	23	1.9	22	90	4	68	23	0	4	72	1.04
74376--74514	52	2.8	50	88	7	194	30	2	4	63	1.25
74481--74520	20	2.1	19	85	4	53	27	5	0	67	1.11
75519--75692	20	8.6	20	81	5	199	34	25	20	20	1.96
75519--75692	60	2.9	60	82	4	224	34	25	20	20	1.96
76076--76146	33	2.2	33	94	0	124	11	23	16	47	1.79
76226--76333	19	5.8	20	72	17	97	44	19	24	12	1.84
76284--76340	14	3.7	14	75	20	60	43	22	24	8	1.81
76238--76356	33	3.4	33	90	6	166	45	21	22	10	1.82
76374--76463	14	5.7	14	72	23	72	8	24	23	43	1.82
76357--76471	33	3.5	33	96	0	212	9	22	20	46	1.79
76352--76449	19	5.7	19	69	22	81	10	22	22	44	1.82
78165--78633	93	5.1	93	99	0	913	21	12	18	46	1.83
78681--78809	19	7.3	19	75	17	125	45	28	17	8	1.77
78717--78809	33	2.8	32	91	4	150	46	27	18	7	1.76
78681--78809	52	2.5	52	74	14	140	45	28	17	8	1.77
78805--78938	19	7.6	19	76	16	128	10	19	24	45	1.81
78827--78883	14	3.7	14	77	20	60	8	21	24	45	1.80
78810--78901	33	2.8	33	96	1	168	9	20	22	46	1.80
78827--78920	51	1.9	47	87	8	134	8	20	25	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80860--80895	14	2.6	14	95	0	63	33	0	22	44	1.53
81002--81051	20	2.5	20	96	3	93	44	18	22	16	1.87
81080--81443	19	20.4	19	83	14	490	14	20	18	46	1.83
81058--81443	52	7.3	55	85	11	428	14	21	18	46	1.84
81080--81443	71	5.1	71	89	8	473	14	20	18	46	1.83
81099--81443	109	3.2	109	91	6	534	14	20	18	46	1.83
83724--83748	12	2.1	12	100	0	50	0	28	0	72	0.86
83923--83969	24	2.0	24	87	8	69	38	21	14	25	1.92
84652--84861	20	10.5	20	86	2	224	19	17	25	37	1.93
84828--84925	20	4.8	20	77	3	79	21	18	23	36	1.95
84828--84984	41	3.9	41	70	14	110	18	17	25	38	1.93
88468--88501	17	2.0	17	88	11	52	52	5	5	35	1.50
88486--88532	15	3.2	15	84	3	60	59	0	4	36	1.17
97261--97307	24	1.9	25	82	4	60	46	2	4	46	1.34
97522--97581	25	2.4	24	81	8	75	38	10	16	35	1.82
97964--98000	16	2.2	18	85	9	51	32	0	8	59	1.27
97953--98006	24	2.2	25	83	3	65	31	0	7	61	1.24
97943--98006	15	4.3	14	75	16	58	31	0	6	62	1.20
98724--98771	21	2.3	21	85	0	60	27	35	25	12	1.92
111472--111496	11	2.3	11	100	0	50	84	0	0	16	0.63
115093--115145	15	3.5	15	78	0	52	13	62	15	9	1.54
119622--119664	14	3.4	14	70	29	51	60	23	9	6	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119621--119669	23	2.1	23	100	0	98	61	22	8	8	1.51
123058--123109	4	13.5	4	76	8	54	28	0	0	71	0.87
123058--123106	18	2.6	18	93	6	80	28	0	0	71	0.86
123061--123116	26	2.2	26	83	0	67	28	1	1	67	1.10
123355--123398	20	2.1	21	87	4	63	75	0	0	25	0.81
123360--123404	12	3.6	13	88	8	51	71	0	0	28	0.87

Tables:   1

The End!