Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006684.1 Hibiscus syriacus cultivar Beakdansim tig00016583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67360

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5579--5610
15
2.1
15
100
0
64
34
18
18
28
1.95
5674--5707
16
2.0
16
88
11
50
41
23
8
26
1.83
13278--13325
24
2.0
25
84
12
64
47
6
2
43
1.40
23753--23814
2
31.0
2
100
0
124
50
0
0
50
1.00
25067--25179
58
1.9
58
81
0
136
36
15
15
33
1.88
28924--29042
24
5.0
24
80
6
134
41
19
14
25
1.89
31561--31607
18
2.6
18
96
0
85
8
23
48
19
1.75
31555--31584
13
2.3
13
100
0
60
13
23
46
16
1.82
33687--33762
24
3.2
24
81
3
64
46
18
14
21
1.84
33704--33819
24
4.8
24
86
6
155
41
18
16
23
1.90
33737--33842
48
2.2
48
83
5
135
44
18
14
22
1.86
37745--37784
22
2.0
21
85
14
57
27
17
5
50
1.67
49555--49591
20
1.9
19
89
10
58
45
10
24
18
1.81
58666--58699
17
2.0
17
88
0
50
29
20
20
29
1.98
59302--59349
25
1.9
25
86
0
69
45
8
14
31
1.74
62135--62264
6
22.2
6
68
10
63
30
4
15
50
1.64
62129--62245
23
4.8
23
73
12
99
30
5
13
49
1.66
62137--62245
52
2.1
52
92
0
182
29
5
14
50
1.65
62151--62233
29
3.0
28
75
14
77
30
6
13
50
1.65
63856--63888
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!