genome.fa.s6685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006685.1 Hibiscus syriacus cultivar Beakdansim tig00016600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67190

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2236--2286	21	2.4	21	100	0	102	13	33	21	31	1.92
2390--2424	14	2.5	15	86	13	56	40	0	0	60	0.97
2404--2501	32	3.4	31	73	26	115	35	1	10	53	1.42
2427--2469	22	2.0	22	100	0	86	34	0	13	51	1.42
2404--2518	54	2.1	54	98	0	221	34	0	11	53	1.43
2418--2593	72	2.5	68	80	11	192	34	1	13	51	1.48
2472--2519	22	2.4	18	73	23	51	33	2	12	52	1.51
2553--2595	20	2.1	21	86	4	61	34	0	13	51	1.42
2536--2637	52	2.0	51	86	9	145	35	1	11	50	1.50
2683--2725	21	2.1	21	91	4	70	37	0	13	48	1.43
5825--5858	2	17.0	2	93	0	59	0	47	0	52	1.00
17099--17225	5	26.2	5	87	12	194	59	0	0	40	0.98
22054--22113	27	2.3	27	97	2	113	61	10	6	21	1.50
36044--36165	63	1.9	64	84	1	165	48	6	4	40	1.51
40938--40991	3	18.0	3	100	0	108	33	0	0	66	0.92
42540--42576	17	2.2	17	90	4	58	43	35	8	13	1.74
43941--44309	20	18.5	20	85	4	458	34	26	18	20	1.96
44991--45037	24	2.0	24	87	8	69	25	14	21	38	1.92
47513--47797	19	16.4	19	77	18	302	46	18	21	14	1.84
47566--47643	14	4.8	15	71	22	52	43	19	24	12	1.86
47541--47778	51	4.6	51	89	7	333	46	17	21	14	1.84
47580--47819	70	3.5	68	78	17	250	45	17	21	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47546--47819	51	5.3	49	86	10	240	45	17	21	14	1.85
47826--47927	19	5.6	19	85	12	151	14	23	17	44	1.86
48034--48070	14	2.6	14	91	0	65	45	21	0	32	1.52
49967--50082	19	6.6	19	75	19	108	45	22	19	12	1.83
50004--50060	14	3.7	14	77	20	60	45	22	21	10	1.82
49985--50077	33	2.8	33	95	0	168	47	21	20	10	1.80
50078--50206	19	7.3	19	75	17	125	8	17	28	45	1.77
50078--50169	33	2.8	33	93	3	150	7	18	28	45	1.76
50250--50906	185	3.5	186	98	0	1284	46	18	12	22	1.83
50250--50906	93	7.1	93	98	1	1284	46	18	12	22	1.83
52610--52732	14	7.7	14	72	24	93	43	22	25	8	1.82
52602--52749	33	4.5	33	96	0	278	45	20	24	9	1.81
52609--52754	19	8.8	18	71	24	108	43	21	24	9	1.82
52766--52820	14	3.6	14	73	21	56	9	25	23	41	1.83
52750--52820	33	2.2	33	94	0	124	8	22	25	43	1.81
52761--52842	33	2.5	33	87	2	110	9	24	21	43	1.83
52941--53011	33	2.2	33	92	0	115	47	18	22	11	1.80
53193--53247	22	2.5	22	81	0	74	20	16	40	23	1.91
53393--53585	20	9.6	20	82	5	219	19	19	25	35	1.95
53393--53585	60	3.2	60	83	0	251	19	19	25	35	1.95
53641--53692	20	2.6	20	93	0	86	23	13	25	38	1.91
60611--60660	20	2.4	21	80	16	59	66	8	6	20	1.40

Tables:   1

The End!