Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006689.1 Hibiscus syriacus cultivar Beakdansim tig00016617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99778

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
519--622
20
5.2
20
80
5
122
47
24
17
11
1.80
519--622
40
2.6
40
86
5
149
47
24
17
11
1.80
973--1037
22
3.0
22
77
4
62
21
13
41
23
1.89
1231--1264
17
2.0
17
100
0
68
17
29
17
35
1.93
11359--11390
17
1.9
16
93
6
55
65
0
0
34
0.93
12792--12824
13
2.3
15
90
10
52
33
0
3
63
1.10
13519--13570
24
2.2
23
79
3
59
53
9
9
26
1.64
16539--16568
3
10.0
3
100
0
60
33
0
0
66
0.92
20019--20057
17
2.3
18
91
8
64
17
0
0
82
0.68
20808--20926
51
2.3
51
92
2
195
23
15
16
44
1.86
20907--21010
42
2.5
42
90
0
163
19
15
17
48
1.82
21216--21251
17
2.1
17
89
0
54
47
0
0
52
1.00
21210--21363
26
5.9
26
69
20
74
49
0
1
48
1.14
21366--21410
23
2.0
23
86
0
63
51
2
4
42
1.34
21508--21570
21
3.3
19
71
22
60
50
0
3
46
1.17
21736--21787
15
3.5
15
71
5
52
30
13
7
48
1.71
21736--21803
30
2.3
29
84
2
82
33
11
5
48
1.64
25689--25744
28
2.0
28
89
0
85
30
16
28
25
1.96
25717--25933
43
5.0
43
84
4
260
32
18
24
24
1.97
28635--29037
41
9.7
41
78
5
355
34
19
19
26
1.96
28633--29037
125
3.3
123
79
7
405
34
19
19
26
1.96
30334--30367
16
2.1
16
88
0
50
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31611--31650
15
2.7
15
84
0
53
67
5
0
27
1.11
43339--43548
60
3.5
60
90
1
305
24
30
16
28
1.96
43339--43547
30
7.0
30
70
10
140
24
30
16
28
1.97
43339--43577
60
4.0
60
88
2
295
24
31
16
27
1.97
43626--43699
30
2.5
30
88
0
112
32
27
22
17
1.97
62590--62653
27
2.5
24
77
18
67
43
1
4
50
1.32
63041--63098
20
3.0
19
80
9
64
50
0
3
46
1.18
63041--63090
21
2.4
21
86
3
66
52
0
4
44
1.20
63069--63106
17
2.2
17
100
0
76
42
0
5
52
1.24
68132--68163
2
15.5
2
93
6
55
50
0
3
46
1.17
78530--78644
57
2.0
57
96
0
212
37
7
7
46
1.62
85910--85972
30
2.1
30
84
0
81
31
15
17
34
1.92
92270--92326
25
2.3
24
80
14
62
38
17
5
38
1.72
94846--94891
17
2.5
18
83
16
51
32
26
21
19
1.97
96377--96426
5
9.6
5
84
6
55
14
0
8
78
0.97
96648--96726
21
3.8
21
83
3
97
34
30
3
31
1.76
96672--96711
14
2.9
14
80
0
53
35
35
5
25
1.78

Tables:   1

The End!