genome.fa.s669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000669.1 Hibiscus syriacus cultivar Beakdansim tig00001302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144374

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6561--6611	19	2.6	20	90	3	77	43	23	17	15	1.88
6598--6651	20	2.7	20	94	0	90	51	18	18	11	1.74
6686--6936	20	12.4	20	91	4	351	36	18	27	17	1.94
6927--6965	20	2.0	20	89	0	60	51	17	15	15	1.77
7046--7118	6	12.2	6	100	0	146	34	49	16	0	1.46
7795--7893	6	16.5	6	100	0	198	0	16	50	33	1.45
7998--8168	20	8.4	20	87	3	198	19	26	18	35	1.95
7996--8148	83	1.8	83	85	0	216	18	26	18	35	1.95
7996--8189	103	1.9	103	90	0	307	19	26	18	35	1.95
7998--8189	83	2.3	81	81	7	208	19	26	18	35	1.95
8205--8256	20	2.6	20	93	0	86	11	17	17	53	1.72
8243--8293	19	2.6	20	90	3	77	15	17	23	43	1.88
12005--12034	14	2.1	15	93	6	53	50	0	3	46	1.18
12505--12546	20	2.1	20	95	0	75	30	9	26	33	1.88
16761--16867	24	4.5	24	72	0	88	46	16	14	21	1.83
16761--16869	48	2.3	48	75	0	110	46	16	15	21	1.83
19346--19406	13	4.3	13	81	18	77	13	22	47	16	1.81
19346--19410	31	2.1	31	100	0	130	12	21	49	16	1.79
19352--19393	18	2.3	18	100	0	84	9	23	50	16	1.75
21539--21646	24	4.5	24	69	2	72	48	15	14	21	1.81
24120--24198	8	10.8	8	69	25	59	17	25	43	13	1.86
24120--24167	15	3.4	15	88	8	66	20	27	39	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24128--24203	13	5.3	13	80	17	80	15	23	44	15	1.85
24143--24207	31	2.1	31	100	0	130	12	21	49	16	1.79
24149--24190	18	2.3	18	100	0	84	9	23	50	16	1.75
34920--34955	17	2.1	17	89	0	54	44	0	0	55	0.99
59008--59072	26	2.7	23	75	13	58	60	1	0	38	1.07
59009--59073	24	2.7	23	78	9	67	58	1	0	40	1.07
77549--77920	106	3.5	106	92	0	602	47	15	8	29	1.74
77414--77949	212	2.5	218	81	4	622	47	16	7	27	1.75
78501--78538	15	2.6	15	87	4	51	50	13	0	36	1.42
82058--82105	23	2.1	23	88	0	69	35	12	18	33	1.89
82515--82587	23	3.2	23	90	0	110	38	20	5	35	1.76
82960--83018	23	2.6	23	88	0	82	40	16	5	37	1.71
82172--83650	430	3.5	431	96	0	2683	38	11	7	41	1.70
83386--83448	23	2.7	23	92	0	99	38	20	4	36	1.74
83869--83955	39	2.2	39	93	0	147	18	12	20	48	1.80
84226--84262	18	2.1	18	89	0	56	51	10	5	32	1.60
84649--84698	25	2.0	25	96	0	91	44	22	8	26	1.80
84980--85042	23	2.7	23	92	0	99	38	20	4	36	1.74
85388--85453	25	2.6	25	80	0	87	42	13	9	34	1.76
87923--88415	183	2.7	182	96	1	905	32	17	15	34	1.91
89916--89996	9	9.3	9	84	8	87	23	33	6	37	1.80
89916--89996	15	5.6	15	79	8	78	23	33	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89916--90000	24	3.5	24	93	0	125	23	32	7	36	1.82
91469--92636	198	5.9	198	97	0	2156	31	17	14	36	1.90
94574--94639	33	2.0	33	90	0	105	22	48	0	28	1.51
94673--94716	21	2.1	21	91	0	70	15	31	11	40	1.83
96878--96920	20	2.3	18	85	14	61	20	16	11	51	1.75
97063--97109	20	2.3	20	89	10	78	17	17	10	55	1.69
97158--97875	228	3.1	229	96	1	1325	39	8	7	44	1.63
107314--107341	2	14.0	2	100	0	56	50	0	0	50	1.00
114792--114838	21	2.2	21	80	0	58	21	27	14	36	1.93
114858--115005	20	7.2	20	81	13	169	24	18	17	39	1.92
114858--115005	41	3.6	41	89	6	196	24	18	17	39	1.92
114854--114994	21	6.8	22	80	13	124	23	18	17	41	1.90
114854--115005	62	2.5	62	84	11	197	25	18	17	39	1.91
118430--118484	19	2.8	19	83	2	65	38	21	21	18	1.94
118437--118587	19	8.7	19	68	21	98	44	19	23	12	1.85
118457--118583	33	3.8	33	93	0	218	45	18	23	12	1.83
118593--118672	33	2.4	33	91	0	124	11	20	21	47	1.80
118614--118672	19	3.4	19	71	22	65	13	20	18	47	1.82
118737--118773	14	2.6	14	91	0	65	45	21	0	32	1.52
120733--120771	20	2.0	20	100	0	78	10	23	15	51	1.73
120862--121139	94	3.1	93	85	7	383	47	17	12	22	1.82
122832--122927	20	5.2	20	72	23	84	46	18	21	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122829--122927	40	2.7	38	75	16	118	46	18	22	13	1.83
122879--122932	14	3.5	14	73	22	54	46	22	22	9	1.80
122829--122932	33	2.9	34	83	9	120	46	19	22	12	1.83
123562--123675	20	5.7	20	87	2	156	20	19	19	41	1.91
123562--123675	41	2.8	40	85	2	156	20	19	19	41	1.91
123568--123690	61	2.0	61	83	0	156	23	18	19	38	1.93
123672--123712	21	2.0	21	90	0	64	39	17	26	17	1.91
135701--135869	60	2.8	59	78	8	146	39	5	20	33	1.77
142219--142260	22	1.9	22	100	0	84	35	19	21	23	1.96

Tables:   1

The End!