Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006690.1 Hibiscus syriacus cultivar Beakdansim tig00016635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82867
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Found at i:450 original size:34 final size:34
Alignment explanation
Indices: 385--450 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
375 TTTTTTCTTG
**
385 TAGAGACAGATAGGCACCTCTAACATTTTTTTAC
1 TAGAGACAGATAGGCACCTCTAACAACTTTTTAC
* **
419 TAGAGCCAGATAGGCACCTCTAGTAACTTTTT
1 TAGAGACAGATAGGCACCTCTAACAACTTTTT
451 TCTCTTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (34 bp):
TAGAGACAGATAGGCACCTCTAACAACTTTTTAC
Found at i:476 original size:46 final size:45
Alignment explanation
Indices: 410--566 Score: 230
Period size: 48 Copynumber: 3.5 Consensus size: 45
400 ACCTCTAACA
410 TTTTTTTACTAGAGCCAGATAGGCACCTCTAGTAACTTTTTTCTC
1 TTTTTTTACTAGAGCCAGATAGGCACCTCTAGTAACTTTTTTCTC
455 TTTTTTTAACTAGAGCCAGATAGGCACCTCTAGTAACTTTTTTCTCTC
1 TTTTTTT-ACTAGAGCCAGATAGGCACCTCTAGTAAC-TTTTT-TCTC
* * *
503 TTTTTTTAACTAGAGTCAGATAGGCACTTCTAGTAA-ATTTTT-TC
1 TTTTTTT-ACTAGAGCCAGATAGGCACCTCTAGTAACTTTTTTCTC
547 -TTTTTTACTAGAGCCAGATA
1 TTTTTTTACTAGAGCCAGATA
567 TATCTCTGGT
Statistics
Matches: 105, Mismatches: 4, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
42 13 0.12
43 6 0.06
44 2 0.02
45 8 0.08
46 33 0.31
47 5 0.05
48 38 0.36
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (45 bp):
TTTTTTTACTAGAGCCAGATAGGCACCTCTAGTAACTTTTTTCTC
Found at i:14473 original size:13 final size:13
Alignment explanation
Indices: 14455--14501 Score: 78
Period size: 12 Copynumber: 3.6 Consensus size: 13
14445 TAAAACACAT
14455 GGGCTGCTAAGGG
1 GGGCTGCTAAGGG
14468 GGGCTGCTAA-GG
1 GGGCTGCTAAGGG
14480 GGGCTGCTAAGGGG
1 GGGCTGCTAA-GGG
14494 GGGCTGCT
1 GGGCTGCT
14502 GTAATTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.38
13 10 0.31
14 10 0.31
ACGTcount: A:0.13, C:0.17, G:0.53, T:0.17
Consensus pattern (13 bp):
GGGCTGCTAAGGG
Found at i:14917 original size:16 final size:16
Alignment explanation
Indices: 14896--14929 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14886 TTACTATTCA
*
14896 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
14912 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
14928 CG
1 CG
14930 GTCGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:15700 original size:15 final size:16
Alignment explanation
Indices: 15680--15711 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15670 TGGCAGATCC
15680 AAATCCAG-ACGGGAA
1 AAATCCAGAACGGGAA
15695 AAATCCAGAACGGGAA
1 AAATCCAGAACGGGAA
15711 A
1 A
15712 GAAAGATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.50, C:0.19, G:0.25, T:0.06
Consensus pattern (16 bp):
AAATCCAGAACGGGAA
Found at i:18991 original size:13 final size:13
Alignment explanation
Indices: 18973--19013 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
18963 TAAAACACAT
18973 GGGCTGCTAAGGG
1 GGGCTGCTAAGGG
18986 GGGCTGCTAA-GG
1 GGGCTGCTAAGGG
18998 GGGCTGCTAAGGG
1 GGGCTGCTAAGGG
19011 GGG
1 GGG
19014 GGGCTGCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.15, C:0.15, G:0.56, T:0.15
Consensus pattern (13 bp):
GGGCTGCTAAGGG
Found at i:19001 original size:12 final size:12
Alignment explanation
Indices: 18973--19012 Score: 71
Period size: 12 Copynumber: 3.2 Consensus size: 12
18963 TAAAACACAT
18973 GGGCTGCTAAGGG
1 GGGCTGCTAA-GG
18986 GGGCTGCTAAGG
1 GGGCTGCTAAGG
18998 GGGCTGCTAAGG
1 GGGCTGCTAAGG
19010 GGG
1 GGG
19013 GGGGCTGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.15, C:0.15, G:0.55, T:0.15
Consensus pattern (12 bp):
GGGCTGCTAAGG
Found at i:24904 original size:19 final size:21
Alignment explanation
Indices: 24876--24914 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
24866 ACTATAATTA
24876 TTTTTCTAATCTTTG-TTTAC
1 TTTTTCTAATCTTTGCTTTAC
*
24896 TTTTT-TAATTTTTGCTTTA
1 TTTTTCTAATCTTTGCTTTA
24915 AATTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTCTAATCTTTGCTTTAC
Found at i:27588 original size:20 final size:19
Alignment explanation
Indices: 27559--27609 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
27549 TACATCATAT
*
27559 GGTATTGATACC-ATAATAG
1 GGTATCGATACCTAT-ATAG
*
27578 AGGTATCGATATTCTATATAG
1 -GGTATCGATA-CCTATATAG
27599 GGTATCGATAC
1 GGTATCGATAC
27610 TCTTAGAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 19 0.73
21 5 0.19
22 2 0.08
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (19 bp):
GGTATCGATACCTATATAG
Found at i:28623 original size:15 final size:15
Alignment explanation
Indices: 28603--28640 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
28593 GATTGTTTTC
28603 GAGTTGTATCTAATT
1 GAGTTGTATCTAATT
*
28618 GAGTTGTATCTAGTT
1 GAGTTGTATCTAATT
*
28633 GTGTTGTA
1 GAGTTGTA
28641 CTCTTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.21, C:0.05, G:0.26, T:0.47
Consensus pattern (15 bp):
GAGTTGTATCTAATT
Found at i:30479 original size:20 final size:20
Alignment explanation
Indices: 30449--30497 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
30439 ATAATATATT
30449 TATATAT-ATATGATGAATG
1 TATATATAATATGATGAATG
*
30468 T-TATGATAATATGATGCATG
1 TATAT-ATAATATGATGAATG
30488 TATATATAAT
1 TATATATAAT
30498 GTACATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 3 0.12
19 3 0.12
20 17 0.65
21 3 0.12
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (20 bp):
TATATATAATATGATGAATG
Found at i:30580 original size:28 final size:27
Alignment explanation
Indices: 30549--30605 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
30539 TGTATATATA
* *
30549 TATATATATATAAACTATAAATATAGAG
1 TATACATATATAAAATATAAATATA-AG
*
30577 TATACATATATAAAATATAAGTATAAG
1 TATACATATATAAAATATAAATATAAG
30604 TA
1 TA
30606 AAAACTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (27 bp):
TATACATATATAAAATATAAATATAAG
Found at i:30614 original size:28 final size:28
Alignment explanation
Indices: 30554--30624 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
30544 ATATATATAT
* * * *
30554 ATATATAAACTATAAATATAGAGTATAC
1 ATATATAAAATATAAGTATAGAGTAAAA
30582 ATATATAAAATATAAGTATA-AGTAAAA
1 ATATATAAAATATAAGTATAGAGTAAAA
30609 ACTATAT--AATATAAGT
1 A-TATATAAAATATAAGT
30625 GGCAATGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.24
27 6 0.16
28 23 0.61
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.32
Consensus pattern (28 bp):
ATATATAAAATATAAGTATAGAGTAAAA
Found at i:30767 original size:2 final size:2
Alignment explanation
Indices: 30760--30793 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
30750 TATAAAAGTG
30760 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30794 AGTGACAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36920 original size:15 final size:15
Alignment explanation
Indices: 36897--36928 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
36887 TGCAATGAAT
36897 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
36912 AATGCATGTATGCAA
1 AATGAATGTATGCAA
36927 AA
1 AA
36929 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:40285 original size:28 final size:26
Alignment explanation
Indices: 40230--40287 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
40220 AAATATTAAT
* *
40230 AAAATAATATATATATAAATACTATG
1 AAAATAATATATATATAAAAAATATG
*
40256 AAAATAATAAGTATATATAAAAAATTTG
1 AAAATAAT-A-TATATATAAAAAATATG
40284 AAAA
1 AAAA
40288 GAAAGAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 8 0.30
27 1 0.04
28 18 0.67
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (26 bp):
AAAATAATATATATATAAAAAATATG
Found at i:41140 original size:18 final size:18
Alignment explanation
Indices: 41114--41171 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
41104 AATATATTAC
41114 AAATAAACATATAAAATT
1 AAATAAACATATAAAATT
*
41132 AAATCAACA-ACTAAAA-T
1 AAATAAACATA-TAAAATT
*
41149 AAATGAA-AT-TAAAATT
1 AAATAAACATATAAAATT
*
41165 ATATAAA
1 AAATAAA
41172 AATGATTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 8 0.24
18 13 0.39
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.26
Consensus pattern (18 bp):
AAATAAACATATAAAATT
Found at i:44357 original size:29 final size:29
Alignment explanation
Indices: 44324--44379 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
44314 ATAGCACTCT
* * *
44324 TTTCGAATTAATTCCCAATATGTCACCAA
1 TTTCGAAATAATTACCAAAATGTCACCAA
*
44353 TTTCGAAATAATTACTAAAATGTCACC
1 TTTCGAAATAATTACCAAAATGTCACC
44380 CGGTCAACGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (29 bp):
TTTCGAAATAATTACCAAAATGTCACCAA
Found at i:51323 original size:3 final size:3
Alignment explanation
Indices: 51315--51437 Score: 158
Period size: 3 Copynumber: 40.7 Consensus size: 3
51305 TTAATATATT
* * * *
51315 TAA TAA TAA AAA TAG TAA TAA TAA TAA AAA TAA TAA TAA TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
51363 TAA TATA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA TGA
1 TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
51410 -AA TAA TAA TAT TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
51438 TGGATAAAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
2 1 0.01
3 96 0.92
4 7 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:51386 original size:38 final size:38
Alignment explanation
Indices: 51334--51438 Score: 167
Period size: 38 Copynumber: 2.8 Consensus size: 38
51324 AAATAGTAAT
*
51334 AATAATAAAAATAATAATAATAATAATATTAATATAT-A
1 AATAATAATAATAATAATAATAATAATATTAATA-ATGA
*
51372 TATAATAATAATAATAATAATAATAATATTAATAATGA
1 AATAATAATAATAATAATAATAATAATATTAATAATGA
*
51410 AATAATAATATTAATAATAATAATAATAT
1 AATAATAATAATAATAATAATAATAATAT
51439 GGATAAAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 2 0.03
38 60 0.97
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (38 bp):
AATAATAATAATAATAATAATAATAATATTAATAATGA
Found at i:51451 original size:38 final size:38
Alignment explanation
Indices: 51334--51451 Score: 155
Period size: 38 Copynumber: 3.1 Consensus size: 38
51324 AAATAGTAAT
* * *
51334 AATAATAAAAATAATAATAATAATAATATTAATATATA
1 AATAATAATAATAATAATAATAATAATATTAATAAAAA
* **
51372 TATAATAATAATAATAATAATAATAATATTAATAATGA
1 AATAATAATAATAATAATAATAATAATATTAATAAAAA
* **
51410 AATAATAATATTAATAATAATAATAATATGGATAAAAA
1 AATAATAATAATAATAATAATAATAATATTAATAAAAA
51448 AATA
1 AATA
51452 GTATCTTCAG
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 69 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (38 bp):
AATAATAATAATAATAATAATAATAATATTAATAAAAA
Found at i:52027 original size:114 final size:114
Alignment explanation
Indices: 51678--52579 Score: 1462
Period size: 114 Copynumber: 7.9 Consensus size: 114
51668 GCTCTTGATG
* *
51678 AGTTCTTCTCA-TATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTT-CT
* *
51741 CTGGTAATG--TGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACA
65 CTGG-AAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
* *
51789 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTGTGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAAC-CT
51854 TCCTCTGGAAACG-ATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
62 T-CTCTGGAAA-GAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
51908 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
*
51973 TGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52022 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
52087 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGG-AAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52137 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* * *
52202 TGGAAAAGAATGATCCATCAA-GTGATGAATTTAAACAAAAGGTTGAACA
66 TGG-AAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52251 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
52316 TGGCAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGG-AAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
52366 AGTTATTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* * *
52431 TGGCAATG-TTGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACA
66 TGG-AAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
52479 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* *
52544 TAGAAAAGAATGATCCATCAAGTCTGATGAATTCAA
66 T-GGAAAGAATGATCCATCAA-TTTGATGAATTCAA
52580 ATCTTTGCTA
Statistics
Matches: 747, Mismatches: 28, Indels: 27
0.93 0.03 0.03
Matches are distributed among these distances:
111 10 0.01
112 26 0.03
113 94 0.13
114 251 0.34
115 249 0.33
116 36 0.05
117 5 0.01
118 11 0.01
119 65 0.09
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (114 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
TGGAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
Found at i:52162 original size:229 final size:227
Alignment explanation
Indices: 51678--52579 Score: 1495
Period size: 229 Copynumber: 3.9 Consensus size: 227
51668 GCTCTTGATG
* *
51678 AGTTCTTCTCA-TATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTT-CT
* **
51741 CTGGTAATGTGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
65 CTGGAAAAATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
* *
51806 ACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTGTGAACTCTTCCTCTGGAAACG-ATG
130 ACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAAC-CTT-CTCTGGAAAAGAATG
51870 ATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
190 ATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
51908 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* *
51973 TGGAAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATG
66 TGGAAA-AATGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
52038 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
129 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
52103 ATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
194 ATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52137 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* * * *
52202 TGGAAAAGAATGATCCATCAAGTGATGAATTTAAACAAAAGGTTGAACAAGTTCTTCTCATTATG
66 TGG-AAA-AATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
*
52267 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAGAATGATCC
129 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
52332 ATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
194 ATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
52366 AGTTATTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
***
52431 TGGCAATGTTGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
66 TGG-AAAAATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
*
52496 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTAGAAAAGAATGATCCA
130 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCCA
*
52561 TCAAGTCTGATGAATTCAA
195 TCAA-TTTGATGAATTCAA
52580 ATCTTTGCTA
Statistics
Matches: 639, Mismatches: 26, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
228 129 0.20
229 333 0.52
230 47 0.07
231 54 0.08
232 11 0.02
233 65 0.10
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (227 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
TGGAAAAATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA
CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCCAT
CAATTTGATGAATTCAAGCAAAAGGTTGAACA
Found at i:52182 original size:115 final size:115
Alignment explanation
Indices: 51678--52579 Score: 1482
Period size: 115 Copynumber: 7.9 Consensus size: 115
51668 GCTCTTGATG
* *
51678 AGTTCTTCTCA-TATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTT-CT
* * *
51741 CTGGTAATG--TGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACA
65 CTGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
* *
51789 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTGTGAACTCT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAAC-CT
*
51854 TCCTCTGGAAACG-ATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
62 T-CTCTGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
51908 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
*
51973 TGG-AAACAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52022 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
52087 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52137 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* * *
52202 TGGAAAAGAATGATCCATCAA-GTGATGAATTTAAACAAAAGGTTGAACA
66 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
52251 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
*
52316 TGGCAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
52366 AGTTATTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* * * *
52431 TGGCAATG-TTGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
52479 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* *
52544 TAGAAAAGAATGATCCATCAAGTCTGATGAATTCAA
66 TGGAAAAGAATGATCCATCAA-TTTGATGAATTCAA
52580 ATCTTTGCTA
Statistics
Matches: 746, Mismatches: 31, Indels: 23
0.93 0.04 0.03
Matches are distributed among these distances:
111 10 0.01
112 26 0.03
113 97 0.13
114 247 0.33
115 249 0.33
116 34 0.05
117 7 0.01
118 11 0.01
119 65 0.09
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (115 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
TGGAAAAGAATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
Found at i:53269 original size:52 final size:52
Alignment explanation
Indices: 53186--53606 Score: 763
Period size: 52 Copynumber: 8.1 Consensus size: 52
53176 TTTAAATTCA
* * *
53186 ATGCT-TGATTCTGTCCAATCAGATCATATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATG-TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
*
53238 ATGCTATGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
*
53290 ATGCTATGTTCTGTCTAATCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
*
53342 ATGCTATGTTCTGTCTAAGCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
53394 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
*
53446 ATGCTATGTTCTGTCTAATCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
53498 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
53550 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
53602 ATGCT
1 ATGCT
53607 TGAGCATATT
Statistics
Matches: 360, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
52 358 0.99
53 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (52 bp):
ATGCTATGTTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
Found at i:54766 original size:6 final size:6
Alignment explanation
Indices: 54751--54837 Score: 69
Period size: 6 Copynumber: 14.5 Consensus size: 6
54741 CCTTGACCCC
54751 TTTT-T TTTTCT TTTTCT TTTTCTT CTTTTCCT TTTT-T TTTTCT TTCTT-T
1 TTTTCT TTTTCT TTTTCT TTTTC-T -TTTT-CT TTTTCT TTTTCT TT-TTCT
*
54800 TCTTTC- TCTTCT TTTTC- TTTTCTT TTTTCT TTTT-T TTT
1 T-TTTCT TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTT
54838 CTTCAAGCAT
Statistics
Matches: 69, Mismatches: 2, Indels: 22
0.74 0.02 0.24
Matches are distributed among these distances:
5 21 0.30
6 29 0.42
7 13 0.19
8 5 0.07
9 1 0.01
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:54785 original size:20 final size:20
Alignment explanation
Indices: 54756--54826 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
54746 ACCCCTTTTT
*
54756 TTTTCTTTTTCTTTTTCTTC
1 TTTTCCTTTTCTTTTTCTTC
54776 TTTTCC-TTT-TTTTT-TTC
1 TTTTCCTTTTCTTTTTCTTC
*
54793 -TTT-CTTTTCTTTCTCTTC
1 TTTTCCTTTTCTTTTTCTTC
*
54811 TTTTTCTTTTCTTTTT
1 TTTTCCTTTTCTTTTT
54827 TCTTTTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
15 1 0.02
16 6 0.14
17 7 0.16
18 8 0.19
19 6 0.14
20 15 0.35
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTCCTTTTCTTTTTCTTC
Found at i:54801 original size:35 final size:36
Alignment explanation
Indices: 54750--54836 Score: 124
Period size: 35 Copynumber: 2.4 Consensus size: 36
54740 ACCTTGACCC
*
54750 CTTTTTT-TTTCTTTTTCTTTTTCTTCTTTTCCTTTT
1 CTTTTTTCTTTC-TTTTCTTTCTCTTCTTTTCCTTTT
*
54786 -TTTTTTCTTTCTTTTCTTTCTCTTCTTTTTCTTTT
1 CTTTTTTCTTTCTTTTCTTTCTCTTCTTTTCCTTTT
*
54821 CTTTTTTCTTTTTTTT
1 CTTTTTTCTTTCTTTT
54837 TCTTCAAGCA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
35 28 0.61
36 18 0.39
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (36 bp):
CTTTTTTCTTTCTTTTCTTTCTCTTCTTTTCCTTTT
Found at i:54801 original size:41 final size:42
Alignment explanation
Indices: 54756--54840 Score: 120
Period size: 41 Copynumber: 2.0 Consensus size: 42
54746 ACCCCTTTTT
*
54756 TTTTCTTTTTCTT-TTTCTTCTTTTCCTTTTT-TTTTTCTTTC
1 TTTTCTTTCTCTTCTTT-TTCTTTTCCTTTTTCTTTTTCTTTC
* *
54797 TTTTCTTTCTCTTCTTTTTCTTTTCTTTTTTCTTTTTTTTTC
1 TTTTCTTTCTCTTCTTTTTCTTTTCCTTTTTCTTTTTCTTTC
54839 TT
1 TT
54841 CAAGCATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
41 25 0.64
42 14 0.36
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (42 bp):
TTTTCTTTCTCTTCTTTTTCTTTTCCTTTTTCTTTTTCTTTC
Found at i:54834 original size:9 final size:9
Alignment explanation
Indices: 54751--54836 Score: 70
Period size: 9 Copynumber: 9.8 Consensus size: 9
54741 CCTTGACCCC
54751 TTTTTTT-T
1 TTTTTTTCT
*
54759 TCTTTTTCT
1 TTTTTTTCT
*
54768 TTTTCTTCT
1 TTTTTTTCT
**
54777 TTTCCTT-T
1 TTTTTTTCT
54785 TTTTTTTCT
1 TTTTTTTCT
*
54794 TTCTTTTCT
1 TTTTTTTCT
* *
54803 TTCTCTTCT
1 TTTTTTTCT
54812 TTTTCTTT-T
1 TTTT-TTTCT
*
54821 CTTTTTTCT
1 TTTTTTTCT
54830 TTTTTTT
1 TTTTTTT
54837 TCTTCAAGCA
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
8 15 0.24
9 45 0.73
10 2 0.03
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:67629 original size:3 final size:3
Alignment explanation
Indices: 67621--67760 Score: 208
Period size: 3 Copynumber: 46.7 Consensus size: 3
67611 TTAATATATT
* * *
67621 TAA TAA TAA AAA TAG TAA TAA TAA TAA TAA AAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
67669 TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
67717 TAT TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
67761 TGGATAAAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 121 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:68042 original size:2 final size:2
Alignment explanation
Indices: 68035--68064 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
68025 TTATTCATTA
68035 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68065 TATTTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71756 original size:18 final size:18
Alignment explanation
Indices: 71733--71769 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
71723 GTCAACGGTT
71733 AACAGGTCTGG-TCGGGTC
1 AACAGGTC-GGATCGGGTC
71751 AACAGGTCGGATCGGGTC
1 AACAGGTCGGATCGGGTC
71769 A
1 A
71770 GGTCGGAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.22, C:0.22, G:0.38, T:0.19
Consensus pattern (18 bp):
AACAGGTCGGATCGGGTC
Found at i:78869 original size:29 final size:30
Alignment explanation
Indices: 78837--78893 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
78827 ATTTTTCAAT
78837 ATTACAAAAATAGCACCAATTT-AAAATTA
1 ATTACAAAAATAGCACCAATTTCAAAATTA
* * *
78866 ATTACCAATATAGCACCATTTTCAAAAT
1 ATTACAAAAATAGCACCAATTTCAAAAT
78894 ATTTACTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.30
Consensus pattern (30 bp):
ATTACAAAAATAGCACCAATTTCAAAATTA
Found at i:78926 original size:27 final size:27
Alignment explanation
Indices: 78896--78986 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
78886 TTCAAAATAT
*
78896 TTACTAAAATGTAATTTTTTTAAAAAA
1 TTACGAAAATGTAATTTTTTTAAAAAA
**
78923 TTACGAAAA-CAACATTTTTTTAAAAAA
1 TTACGAAAATGTA-ATTTTTTTAAAAAA
**
78950 TTACGAAAATAGT-ATTTTTAAAAAAAA
1 TTACGAAAAT-GTAATTTTTTTAAAAAA
*
78977 TTACAAAAAT
1 TTACGAAAAT
78987 AGCACCATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 52 0.98
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (27 bp):
TTACGAAAATGTAATTTTTTTAAAAAA
Found at i:78967 original size:26 final size:27
Alignment explanation
Indices: 78909--78990 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
78899 CTAAAATGTA
* *
78909 ATTTTTTTAAAAAATTACGAAAACAAC
1 ATTTTTTTAAAAAATTACGAAAATAGC
*
78936 ATTTTTTTAAAAAATTACGAAAATAGT
1 ATTTTTTTAAAAAATTACGAAAATAGC
** *
78963 ATTTTTAAAAAAAATTACAAAAATAGC
1 ATTTTTTTAAAAAATTACGAAAATAGC
78990 A
1 A
78991 CCATTTTCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (27 bp):
ATTTTTTTAAAAAATTACGAAAATAGC
Found at i:79021 original size:29 final size:29
Alignment explanation
Indices: 78970--79050 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 29
78960 AGTATTTTTA
* * *
78970 AAAAAAATTACAAAAATAG-CACCATTTTC
1 AAAATAATTACCAAAAT-GTCACCAATTTC
* * * *
78999 GAATTAATTCCCAATATGTCACCAATTTC
1 AAAATAATTACCAAAATGTCACCAATTTC
*
79028 AAAATAATTACTAAAATGTCACC
1 AAAATAATTACCAAAATGTCACC
79051 CGAACAACGG
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (29 bp):
AAAATAATTACCAAAATGTCACCAATTTC
Found at i:81572 original size:45 final size:42
Alignment explanation
Indices: 81464--81589 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 42
81454 CACTTTAACA
* *
81464 TTTTTCTACTAGAGCCGGATAGACACCTCTA-TAATTTTTTCT
1 TTTTTC-ACTAGAGCCAGATAGGCACCTCTAGTAATTTTTTCT
* * *
81506 TTTTTAACTAGAGTCAGATAGGCACCTCTAGTAAATTTTTCCTTT
1 TTTTTCACTAGAGCCAGATAGGCACCTCTAGT-AATTTTT--TCT
* *
81551 TTTTTCACTAGAGCCAAATAGGCACCTCTAG-CATTTTTT
1 TTTTTCACTAGAGCCAGATAGGCACCTCTAGTAATTTTTT
81590 ATAGGAGTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
41 22 0.31
42 6 0.08
43 13 0.18
45 30 0.42
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (42 bp):
TTTTTCACTAGAGCCAGATAGGCACCTCTAGTAATTTTTTCT
Done.