Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006695.1 Hibiscus syriacus cultivar Beakdansim tig00016655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127750

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1538--1567
14
2.1
14
93
0
51
30
20
6
43
1.77
8876--8933
1
58.0
1
75
0
53
87
1
10
0
0.60
8879--8933
8
6.8
8
83
8
67
87
1
10
0
0.63
8878--8933
9
5.7
9
87
12
67
87
1
10
0
0.62
8873--8934
24
2.6
24
87
5
90
85
1
12
0
0.67
8876--8933
15
4.3
14
80
18
61
87
1
10
0
0.60
8873--8926
11
5.0
11
82
13
76
87
1
11
0
0.63
10210--10437
113
2.0
114
90
0
359
34
14
21
29
1.93
11122--11744
113
5.5
114
95
2
1123
39
15
17
28
1.90
11646--11783
73
1.9
73
86
3
197
35
16
14
33
1.89
11533--11930
186
2.1
186
88
0
573
36
14
17
30
1.90
11646--11817
73
2.4
73
83
2
193
36
16
15
31
1.90
11428--12042
299
2.1
298
88
1
910
36
15
17
30
1.91
11719--12213
113
4.4
111
80
8
455
38
14
17
29
1.90
11911--11975
20
3.3
20
66
12
53
43
10
18
27
1.83
11719--12091
113
3.4
109
83
7
462
36
14
17
30
1.90
12012--12301
121
2.4
123
84
8
357
42
15
18
23
1.89
12445--12497
3
16.3
3
84
11
61
39
0
0
60
0.97
12445--12498
18
2.6
22
75
22
71
40
0
0
59
0.98
16891--16975
30
2.8
31
80
10
95
35
9
4
50
1.56
27399--27428
14
2.1
14
100
0
60
26
6
16
50
1.70
45749--45932
93
2.0
93
98
0
359
39
8
15
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46166--46199
2
17.0
2
100
0
68
50
0
0
50
1.00
62673--62742
2
35.0
2
100
0
140
50
0
0
50
1.00
90318--90838
258
2.0
262
98
1
1005
27
29
12
29
1.93
94259--94308
25
2.0
25
96
0
91
38
8
10
44
1.68
112339--112364
11
2.4
11
100
0
52
19
38
0
42
1.51
123232--123257
4
6.5
4
100
0
52
76
0
0
23
0.78
124261--124320
32
1.9
31
82
3
75
25
11
8
55
1.63

Tables:   1

The End!