genome.fa.s6696.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006696.1 Hibiscus syriacus cultivar Beakdansim tig00016658_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205036

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000--1034	17	2.1	17	94	5	63	25	37	25	11	1.90
6316--6344	2	14.5	2	100	0	58	48	0	0	51	1.00
8066--8110	14	3.3	14	87	3	56	60	0	6	33	1.23
39591--39684	32	2.9	32	98	0	179	51	9	21	18	1.74
41596--41637	3	14.0	3	100	0	84	66	0	0	33	0.92
42304--42408	54	2.0	53	90	1	165	27	18	9	44	1.80
44877--44946	27	2.6	27	84	4	88	37	15	15	31	1.89
44922--45414	67	7.9	66	73	15	429	32	18	21	27	1.96
44989--45335	56	5.8	56	72	15	257	33	17	20	28	1.96
44922--45414	123	4.0	123	88	2	704	32	18	21	27	1.96
45236--45318	27	3.0	27	73	13	96	34	18	16	30	1.93
44922--45414	246	2.0	246	90	2	785	32	18	21	27	1.96
44922--45480	123	4.5	122	86	2	604	33	18	20	28	1.96
44928--45481	246	2.2	244	85	3	718	33	18	20	28	1.96
46582--46614	15	2.1	17	88	11	52	33	21	6	39	1.78
50515--50549	18	1.9	18	94	0	61	25	28	14	31	1.95
50550--50643	31	3.0	31	75	9	102	36	25	15	22	1.94
52804--52846	19	2.2	19	83	8	50	55	11	9	23	1.64
59975--60000	5	5.2	5	100	0	52	0	42	0	57	0.98
61529--61845	167	1.9	167	89	2	494	30	15	20	33	1.94
64006--64346	36	9.8	36	79	9	305	20	19	27	32	1.97
64175--64226	24	2.2	24	92	0	86	23	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64131--64262	60	2.2	60	94	0	228	19	20	30	29	1.97
64103--64298	96	2.0	96	87	1	277	19	20	29	30	1.98
64061--64331	132	2.1	132	83	1	337	19	20	27	32	1.97
71426--71557	67	2.0	67	92	3	221	45	12	19	21	1.84
72699--72746	20	2.4	18	77	12	51	22	2	10	64	1.35
77864--77914	27	2.0	25	84	7	66	37	19	1	41	1.63
87557--87590	15	2.2	16	84	10	52	67	0	0	32	0.91
100936--100984	21	2.3	22	76	16	59	44	10	12	32	1.75
106900--106944	16	2.8	16	89	0	72	53	22	13	11	1.71
107098--107128	16	1.9	16	93	0	53	48	25	12	12	1.77
107160--107245	11	7.5	11	70	21	61	24	23	23	29	1.99
107172--107239	12	5.8	12	79	6	86	22	23	23	30	1.99
107161--107245	23	3.7	23	93	0	143	23	23	23	29	1.99
108162--108253	40	2.2	40	81	9	105	36	16	13	33	1.87
108514--108558	14	3.2	14	93	0	72	51	24	13	11	1.73
108498--108582	24	3.5	24	70	17	68	50	20	14	15	1.77
107963--108780	408	2.0	408	97	0	1528	37	17	16	28	1.92
114892--115237	185	1.9	183	91	2	568	46	8	3	40	1.53
115206--115263	20	2.9	20	76	7	55	44	1	1	51	1.21
115647--115918	134	2.0	134	99	0	535	36	16	11	35	1.84
126688--126764	28	2.7	28	80	8	84	45	9	12	32	1.74
130374--130447	29	2.5	30	78	8	80	43	8	17	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131709--131788	35	2.2	36	82	6	101	41	25	1	32	1.63
131709--131805	36	2.7	36	79	4	90	39	28	2	29	1.68
132589--132683	35	2.7	34	85	4	127	30	2	25	42	1.67
133456--133532	35	2.2	36	86	9	106	40	22	1	36	1.62
134427--134506	35	2.3	35	91	0	124	32	0	23	43	1.54
138097--138226	67	1.9	67	98	0	251	23	24	9	43	1.83
140439--140471	16	2.1	16	94	0	57	39	18	12	30	1.87
143850--143877	3	9.3	3	100	0	56	67	0	32	0	0.91
144320--144349	14	2.1	14	93	0	51	50	0	3	46	1.18
144906--144951	23	2.0	23	87	8	67	60	0	0	39	0.97
145995--146077	29	2.7	31	78	7	91	42	2	22	32	1.67
148689--148718	5	6.0	5	100	0	60	80	0	20	0	0.72
155962--156042	40	2.1	37	84	6	99	25	12	8	53	1.67
161050--161077	3	9.3	3	100	0	56	32	0	0	67	0.91
161220--162276	352	3.0	352	99	0	2087	33	29	17	18	1.94
162971--163017	20	2.4	19	80	16	51	25	2	14	57	1.49
171574--171626	21	2.5	21	96	0	97	22	24	16	35	1.95
171684--171735	21	2.5	21	81	3	61	38	19	25	17	1.93
171724--171831	20	5.3	20	82	6	110	32	25	17	25	1.97
171786--171838	20	2.7	20	90	0	79	24	26	20	28	1.99
172356--172423	20	3.5	19	82	6	82	47	25	16	11	1.80
172419--172489	19	3.7	20	85	7	103	12	18	21	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172472--172559	33	2.6	33	92	1	140	11	25	25	38	1.89
172527--172584	20	2.9	20	80	10	64	13	24	18	43	1.87
174639--174705	21	3.2	21	66	6	55	23	35	20	19	1.95
174583--174705	42	2.9	42	80	4	106	22	35	17	23	1.95
176065--176100	14	2.6	14	95	0	63	30	0	25	44	1.54
176264--176389	33	3.8	32	87	8	191	15	22	19	42	1.88
176264--176388	66	1.9	66	98	0	241	15	22	20	42	1.89
179989--180037	20	2.5	20	96	0	89	34	24	22	18	1.96
180065--180132	19	3.8	19	87	12	101	13	23	16	47	1.81
182141--182196	20	2.8	20	78	2	60	39	19	23	17	1.92
182185--182242	14	3.9	14	79	16	71	48	25	17	8	1.75
182169--182247	32	2.4	33	95	2	142	46	24	18	10	1.80
182768--182812	18	2.5	18	88	0	72	13	15	44	26	1.83
184132--184205	20	3.8	20	87	1	87	47	22	16	13	1.81
184439--184482	22	2.0	22	95	0	79	18	15	45	20	1.85
184670--184722	20	2.7	20	93	0	88	24	16	28	30	1.97
184733--184825	20	4.6	20	78	4	96	17	24	18	39	1.91
184715--184825	41	2.7	41	94	4	188	17	22	18	42	1.89
186391--186424	14	2.4	14	95	0	59	41	20	23	14	1.89
196512--196564	21	2.5	21	75	6	63	20	24	18	35	1.95
196624--196682	18	3.2	18	83	9	82	27	30	15	27	1.96
196624--196680	20	3.0	20	87	5	82	26	31	14	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196873--196916	22	2.0	22	90	0	70	20	43	15	20	1.88
197177--197235	20	3.0	20	87	0	73	15	18	22	44	1.87
197372--197426	25	2.2	24	78	15	58	20	9	18	52	1.71
198076--198114	14	2.8	14	84	0	51	35	0	17	46	1.49
198318--198378	20	3.0	20	90	0	95	16	19	22	40	1.90
198902--198953	20	2.6	20	87	0	68	25	17	28	28	1.97
198880--198993	60	1.9	61	83	5	151	22	15	25	35	1.94
198983--199034	20	2.5	21	87	3	70	21	23	17	38	1.93
199024--199076	21	2.5	22	81	6	74	33	18	26	20	1.96

Tables:   1

The End!