genome.fa.s6697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006697.1 Hibiscus syriacus cultivar Beakdansim tig00016659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59239

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5913--6053	43	3.3	42	89	4	214	41	16	20	21	1.90
6808--9127	975	2.4	972	95	2	4157	38	13	8	38	1.76
6808--9127	495	4.7	495	95	2	4175	38	13	8	38	1.76
9082--9173	46	2.0	46	100	0	184	26	21	13	39	1.90
18004--18492	139	3.5	139	80	5	454	29	12	14	43	1.82
18055--18561	139	3.7	135	77	7	403	29	12	14	42	1.83
19826--19858	2	16.5	2	100	0	66	51	0	0	48	1.00
20017--20057	12	3.4	12	89	0	64	58	17	14	9	1.62
20016--20099	24	3.5	24	77	9	91	50	15	15	19	1.79
21843--21915	36	2.0	36	97	0	137	28	20	8	42	1.81
24434--26951	712	3.5	711	91	1	3997	31	21	14	33	1.93
29456--29547	20	4.6	20	80	2	121	36	19	21	21	1.95
30112--30201	20	4.6	20	87	1	101	14	17	23	44	1.86
30166--30209	20	2.2	20	87	0	61	13	13	20	52	1.74
32076--32221	20	7.6	20	85	9	196	39	21	19	19	1.93
32079--32240	74	2.2	74	92	0	261	40	20	20	17	1.91
32266--32312	20	2.3	20	88	0	67	21	19	23	36	1.95
32286--32382	33	2.9	34	81	3	133	12	18	22	46	1.82
32863--32967	21	5.0	21	71	3	86	21	37	18	22	1.94
32860--32970	42	2.6	42	77	5	109	21	37	18	22	1.94
34315--34350	14	2.6	14	90	0	54	30	0	22	47	1.52
34506--34608	19	5.4	19	98	0	197	15	21	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34615--34701	20	4.3	20	89	2	131	18	21	24	35	1.95
38037--38143	20	5.3	20	83	4	135	21	19	20	38	1.94
38035--38143	41	2.7	40	84	4	139	21	20	21	37	1.94
38140--38180	21	2.0	21	90	0	64	39	17	26	17	1.91
39661--40211	139	4.0	138	80	6	510	29	13	13	43	1.83
41801--41847	22	2.1	22	84	7	60	70	0	2	27	0.99
41803--41844	17	2.4	18	84	8	59	71	0	2	26	0.98
45722--45873	40	3.6	40	77	13	153	45	14	19	21	1.85
45754--45873	44	2.7	45	87	5	163	48	13	18	20	1.81
46632--48981	496	4.7	496	97	0	4364	38	13	8	38	1.76
48936--49027	46	2.0	46	100	0	184	26	21	13	39	1.90
49391--49486	41	2.3	41	96	0	174	39	17	22	19	1.92
49394--49486	21	4.6	20	81	4	105	38	18	23	19	1.93
49413--49547	41	3.3	41	80	6	114	37	20	20	20	1.94
49475--49569	20	4.7	20	80	2	91	34	24	17	23	1.96
49753--49795	21	2.0	21	95	0	77	20	44	16	18	1.87
50056--50093	20	1.9	20	88	0	58	15	15	18	50	1.79
51399--51443	18	2.5	18	85	0	63	26	42	15	15	1.87
51904--51969	20	3.4	20	81	4	73	37	24	22	15	1.92
51959--52013	14	3.7	14	78	21	67	47	27	16	9	1.76
51943--52031	31	2.8	32	91	5	144	47	23	17	11	1.80
52048--52105	14	3.9	14	79	16	71	8	17	25	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52043--52121	32	2.4	33	95	2	142	10	18	24	46	1.80
52062--52179	20	6.4	19	77	11	95	13	20	24	41	1.88
54013--54048	14	2.6	14	90	0	54	30	0	22	47	1.52
54107--54182	14	4.7	15	74	25	59	44	19	22	13	1.85
54120--54155	17	2.1	17	100	0	72	44	16	22	16	1.86
54088--54182	50	1.9	50	91	0	154	42	21	23	13	1.88
54208--54257	20	2.6	19	90	3	73	20	24	24	32	1.98
54619--54654	14	2.6	14	90	0	54	30	0	22	47	1.52
56104--56128	12	2.1	12	100	0	50	72	0	28	0	0.86
57560--57650	41	2.2	40	82	3	110	24	16	37	21	1.94

Tables:   1

The End!