genome.fa.s6698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006698.1 Hibiscus syriacus cultivar Beakdansim tig00016665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58308

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7002--7104	36	2.9	36	95	0	179	25	16	16	41	1.89
13546--13598	19	2.8	19	91	0	88	20	26	16	35	1.94
13644--13697	21	2.6	21	96	0	99	25	14	29	29	1.95
13730--13792	19	3.3	19	100	0	126	19	20	17	42	1.89
13787--13839	22	2.4	22	90	0	88	16	15	28	39	1.89
13921--13953	6	5.5	6	100	0	66	33	51	15	0	1.43
14577--14629	22	2.4	22	90	0	88	37	26	16	18	1.93
14618--14758	41	3.4	41	96	0	255	33	21	19	24	1.97
14690--14755	21	3.2	21	65	4	62	31	24	19	24	1.98
14698--14763	21	3.2	21	65	4	53	37	25	16	19	1.93
14760--14826	28	2.4	28	97	0	125	29	17	29	22	1.97
14809--14861	19	2.8	19	97	0	97	33	16	28	20	1.95
16141--16243	36	2.9	36	94	0	179	26	17	15	40	1.89
26845--26893	23	2.1	23	100	0	98	16	16	42	24	1.87
29294--29338	22	2.0	22	100	0	90	33	13	17	35	1.89
30160--30348	29	6.5	29	93	2	317	31	2	20	46	1.64
33258--33310	25	2.1	25	89	0	79	30	7	13	49	1.69
39855--39922	35	1.9	35	90	0	109	30	25	32	11	1.91
40005--40123	24	5.0	24	89	4	177	40	20	15	24	1.90
40008--40141	48	2.8	48	85	4	137	41	20	14	23	1.90
43698--43831	30	4.6	29	88	6	189	32	3	18	44	1.68
43698--43831	59	2.3	59	88	5	191	32	3	18	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44892--44942	25	2.0	25	88	0	75	29	7	17	45	1.77
48953--48996	22	2.0	22	100	0	88	36	0	13	50	1.42
49020--49078	31	1.9	31	92	0	100	42	10	6	40	1.65
49176--49219	22	2.0	22	95	0	79	38	0	13	47	1.43
48828--49365	223	2.4	223	96	0	1004	36	5	11	46	1.64
49243--49301	31	1.9	31	89	0	91	42	8	5	44	1.57
52850--52918	33	2.1	34	83	8	88	49	1	1	47	1.19
56832--56874	20	2.2	20	91	0	68	34	34	18	11	1.87
56900--56968	19	3.7	19	78	7	61	21	24	15	37	1.93
58214--58251	13	2.9	13	80	11	51	26	23	10	39	1.87

Tables:   1

The End!