genome.fa.s6699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006699.1 Hibiscus syriacus cultivar Beakdansim tig00016673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41468

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1501--1543	20	2.2	20	95	0	77	27	41	16	13	1.86
4243--4284	17	2.4	18	80	4	50	11	19	47	21	1.81
4227--4271	22	2.0	22	86	0	63	15	20	42	22	1.89
4281--4339	28	2.0	30	90	6	95	30	30	23	15	1.95
4279--4358	9	8.3	9	77	13	70	31	27	26	15	1.95
4301--4359	20	2.9	22	83	14	74	32	25	25	16	1.97
6552--6691	21	6.7	21	82	6	169	30	22	22	25	1.99
6535--6691	83	1.9	83	89	0	242	30	21	21	26	1.98
6933--7000	21	3.2	21	93	0	109	25	22	23	29	1.99
7010--7124	21	5.5	21	78	12	121	26	20	21	30	1.98
7010--7164	62	2.5	62	80	9	156	27	20	22	29	1.98
8825--8974	46	3.3	45	90	4	246	39	12	10	38	1.77
9505--9551	21	2.3	20	82	7	60	29	25	0	44	1.54
9504--9551	19	2.5	20	83	12	64	29	27	0	43	1.55
18408--18537	54	2.4	54	81	2	152	31	16	32	20	1.94
18449--18565	54	2.1	55	85	4	157	31	17	27	23	1.97
19984--20034	2	25.5	2	100	0	102	50	0	0	49	1.00
21877--23351	134	11.1	133	86	2	1821	30	19	19	30	1.97
21877--23351	401	3.7	397	86	2	1892	30	19	19	30	1.97
22259--22982	44	16.4	44	66	13	252	29	20	20	30	1.97
21905--22776	45	19.5	45	62	16	127	30	19	19	30	1.96
23983--24447	90	5.2	90	92	0	761	35	21	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34937--34989	21	2.5	21	79	11	72	39	18	39	1	1.62
34992--35042	21	2.4	21	86	0	75	45	23	29	1	1.64
35455--35792	43	7.9	43	80	3	342	33	23	14	27	1.94
36642--36675	2	17.0	2	100	0	68	50	0	0	50	1.00
36939--37053	60	1.9	60	96	0	212	32	13	12	42	1.80
39389--39465	29	2.7	29	89	0	109	16	40	27	15	1.89
39866--39901	17	2.1	17	100	0	72	16	0	41	41	1.48
40028--40132	30	3.5	30	84	6	133	38	0	14	46	1.51
40074--40128	15	3.6	16	70	20	55	41	0	14	43	1.45

Tables:   1

The End!