genome.fa.s67.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000067.1 Hibiscus syriacus cultivar Beakdansim tig00000116_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74899

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7204--7233	12	2.5	12	88	0	51	66	3	23	6	1.30
7320--7364	20	2.2	21	84	4	56	53	15	0	31	1.43
7330--7451	63	1.9	64	91	5	203	55	13	0	30	1.39
7406--7552	77	1.9	75	85	8	199	55	11	2	30	1.47
9146--9220	5	14.8	5	76	13	64	70	1	5	22	1.15
9147--9219	14	5.2	14	71	5	67	69	1	5	23	1.17
20749--20829	23	3.8	22	80	15	89	24	30	25	18	1.98
20749--20810	23	2.7	23	90	2	90	24	30	25	19	1.98
22954--22987	2	17.0	2	100	0	68	50	0	0	50	1.00
24914--25034	63	1.9	63	88	6	183	56	14	0	29	1.39
24989--25096	25	4.3	24	64	15	74	59	14	0	25	1.36
31199--31232	13	2.7	13	90	4	52	41	32	0	26	1.56
41585--43251	830	2.0	831	94	1	2932	43	9	10	36	1.71
44270--44315	23	2.0	23	91	0	74	26	13	47	13	1.78
45266--45373	38	2.9	37	82	8	128	39	12	16	31	1.85
48133--48160	14	2.0	14	100	0	56	21	0	35	42	1.53
48775--48826	23	2.3	23	80	3	61	25	26	15	32	1.95
48786--48837	23	2.3	23	79	0	59	28	25	17	28	1.97
57585--57619	6	5.7	6	93	6	61	14	71	14	0	1.15
57585--57625	19	2.2	18	95	4	73	14	73	12	0	1.11
57584--57619	13	2.8	13	95	4	65	13	72	13	0	1.13
61616--61662	15	3.1	15	81	9	51	38	2	6	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74536--74637	36	2.8	36	83	0	114	40	23	19	16	1.91

Tables:   1

The End!