Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000670.1 Hibiscus syriacus cultivar Beakdansim tig00001303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71547

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3578--3630
19
2.8
19
83
11
65
45
0
0
54
0.99
5858--5934
39
2.0
39
92
0
127
55
1
12
29
1.45
13927--13971
23
2.0
22
82
4
54
20
40
17
22
1.92
24013--24058
14
3.5
14
77
17
62
30
8
15
45
1.76
24272--24328
6
9.5
6
98
0
78
17
57
0
24
1.39
24272--24328
18
3.2
18
92
0
87
17
57
0
24
1.39
28567--28592
9
2.9
9
100
0
52
57
0
0
42
0.98
35284--35337
15
3.4
15
71
14
54
55
5
3
35
1.41
35354--35389
17
2.1
17
89
0
54
27
19
8
44
1.79
36821--36908
10
9.1
10
74
12
85
18
22
30
28
1.97
36821--36910
19
4.7
19
87
6
119
17
24
30
27
1.97
36904--36949
17
2.7
17
93
0
83
17
39
23
19
1.92
36928--36970
12
3.4
12
87
6
50
16
34
25
23
1.95
36946--36989
7
6.4
7
89
5
72
15
27
29
27
1.96
36946--36985
13
3.0
13
92
3
62
15
27
30
27
1.96
36946--36989
20
2.1
21
91
4
72
15
27
29
27
1.96
44144--44231
10
9.1
10
72
12
76
19
22
29
28
1.98
44144--44233
19
4.7
18
87
4
90
18
24
28
27
1.98
44227--44267
17
2.4
17
91
0
64
17
39
24
19
1.92
44257--44286
7
4.4
7
91
8
53
16
30
30
23
1.96
44257--44282
13
2.0
13
100
0
52
15
30
30
23
1.95
50887--50944
21
2.7
22
71
15
59
20
18
20
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53073--53212
70
2.0
70
100
0
280
28
24
12
34
1.92
56942--56976
4
8.8
4
100
0
70
0
22
0
77
0.78
61264--61389
50
2.5
50
81
0
144
15
34
28
22
1.94
61510--61549
10
4.0
10
84
12
55
32
27
0
40
1.57
64898--65050
56
2.7
56
84
4
202
35
15
13
35
1.86

Tables:   1

The End!