Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006700.1 Hibiscus syriacus cultivar Beakdansim tig00016682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 228063
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 2
Found at i:6611 original size:21 final size:21
Alignment explanation
Indices: 6582--6633 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
6572 ACGCGATCTC
*
6582 CATTATCGCAAATTCGCGTTG
1 CATTTTCGCAAATTCGCGTTG
6603 CATTTTCGCAAATTCGCGTTG
1 CATTTTCGCAAATTCGCGTTG
6624 CATTTT-GCAA
1 CATTTTCGCAA
6634 TGCGATAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (21 bp):
CATTTTCGCAAATTCGCGTTG
Found at i:6716 original size:20 final size:21
Alignment explanation
Indices: 6691--6742 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
6681 TTTTCCCAAT
*
6691 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
6711 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
6732 TCGCAATGCGA
1 TCGCAATGCGA
6743 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:6756 original size:20 final size:20
Alignment explanation
Indices: 6731--6838 Score: 110
Period size: 20 Copynumber: 5.3 Consensus size: 20
6721 AATTGGGAAA
6731 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
6751 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
6771 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
6792 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
6812 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
*
6832 TTCGCAA
1 ATCGCAA
6839 CGTGATTTAC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
19 2 0.03
20 58 0.77
21 13 0.17
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:6839 original size:20 final size:20
Alignment explanation
Indices: 6793--6845 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
6783 TAATACAAAA
*
6793 TCGCAACGAGATACTGACTT
1 TCGCAACGAGATTCTGACTT
*
6813 TCGCAACGCGATTCTGACTT
1 TCGCAACGAGATTCTGACTT
*
6833 TCGCAACGTGATT
1 TCGCAACGAGATT
6846 TACATAGCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (20 bp):
TCGCAACGAGATTCTGACTT
Found at i:7400 original size:19 final size:19
Alignment explanation
Indices: 7362--7429 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
7352 TTCGAGAATG
7362 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
7382 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
7401 AAAATTCGCAACGCGAAACC
1 AAAA-TCGCAACGCGAAATA
7421 AAAATCGCA
1 AAAATCGCA
7430 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 13 0.32
20 28 0.68
ACGTcount: A:0.47, C:0.25, G:0.16, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:7471 original size:20 final size:20
Alignment explanation
Indices: 7425--7495 Score: 103
Period size: 19 Copynumber: 3.7 Consensus size: 20
7415 GAAACCAAAA
7425 TCGCA-TTGCGATTTTCATT
1 TCGCAGTTGCGATTTTCATT
* *
7444 TCG-TGTTGCGATTTTTATT
1 TCGCAGTTGCGATTTTCATT
7463 TCGCAGTTGCGATTTTCATT
1 TCGCAGTTGCGATTTTCATT
7483 TCGC-GTTGCGATT
1 TCGCAGTTGCGATT
7496 GTCTGGTCGC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 28 0.61
20 18 0.39
ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48
Consensus pattern (20 bp):
TCGCAGTTGCGATTTTCATT
Found at i:7515 original size:33 final size:33
Alignment explanation
Indices: 7478--7565 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
7468 GTTGCGATTT
* *
7478 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
7511 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
7544 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
7566 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:7567 original size:20 final size:20
Alignment explanation
Indices: 7533--7590 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
7523 GCGATTCTCT
**
7533 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
7553 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
7573 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
7591 AACAAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:9666 original size:21 final size:21
Alignment explanation
Indices: 9642--9708 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
9632 TCATTCCTCG
9642 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
9663 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
9684 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
9705 AGAG
1 AGAG
9709 CCCAATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:9666 original size:42 final size:42
Alignment explanation
Indices: 9586--9708 Score: 106
Period size: 42 Copynumber: 2.9 Consensus size: 42
9576 GCCCGACTCG
* * ** * * *
9586 CCTATCATCCCTCAAGAGTCTACTCCTATCGTTGAAGAGGCC
1 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
9628 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
* * * * *
9670 ACTGTCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 CCTATCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
9709 CCCAATTCAC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 61 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.24
Consensus pattern (42 bp):
CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
Found at i:11087 original size:14 final size:14
Alignment explanation
Indices: 11068--11103 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
11058 TTTGTTTAAT
11068 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
11082 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
11096 TGATTTGT
1 TGATTTGT
11104 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:11309 original size:33 final size:32
Alignment explanation
Indices: 11267--11392 Score: 191
Period size: 33 Copynumber: 3.8 Consensus size: 32
11257 TTAAATTCGT
11267 GTTGCGATTTTCATTTCGCATTGCGATTCCCTC
1 GTTGCGATTTTCATTTCGCATTGCGATT-CCTC
**
11300 GTTGCGATTTTCATTTCGCATTGCGAAATT-AGC
1 GTTGCGATTTTCATTTCGCATTGCG--ATTCCTC
11333 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTC-CTC
11366 GTTGCGATTTTCATTTCGCATTGCGAT
1 GTTGCGATTTTCATTTCGCATTGCGAT
11393 AGTAATTTCC
Statistics
Matches: 85, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.04
33 79 0.93
35 3 0.04
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.43
Consensus pattern (32 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCCTC
Found at i:11351 original size:66 final size:66
Alignment explanation
Indices: 11267--11391 Score: 241
Period size: 66 Copynumber: 1.9 Consensus size: 66
11257 TTAAATTCGT
11267 GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGAAATTAG
1 GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGAAATTAG
11332 C
66 C
*
11333 GTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGA
1 GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGA
11392 TAGTAATTTC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.42
Consensus pattern (66 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGAAATTAG
C
Found at i:15049 original size:20 final size:20
Alignment explanation
Indices: 14992--15040 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
14982 ATTCATTTGA
14992 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
15012 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
15032 TTATCGCAA
1 CTATCGCAA
15041 TGAGAAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.18
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:15109 original size:19 final size:19
Alignment explanation
Indices: 15068--15135 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
15058 GAAATGAAAA
15068 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
15084 TC-C-TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
15101 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
15120 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
15136 TCGTTGCGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.23
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 30 0.64
ACGTcount: A:0.13, C:0.24, G:0.16, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:15252 original size:14 final size:14
Alignment explanation
Indices: 15233--15269 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
15223 CATCAATTAA
15233 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
15247 ACAAATCATCTTTT
1 ACAAATCAACATTT
15261 ACAAATCAA
1 ACAAATCAA
15270 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:17192 original size:19 final size:20
Alignment explanation
Indices: 17149--17204 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
17139 TCACAACGCA
*
17149 AAATGACTATCGTAACGCGG
1 AAATGACTATCGCAACGCGG
* *
17169 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCGG
**
17188 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
17205 ACAAAATCGC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:17212 original size:14 final size:14
Alignment explanation
Indices: 17193--17250 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
17183 ATGCGAAATG
17193 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
17207 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
17223 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
17239 AAAATCGCAACG
1 AAAATCGCAACG
17251 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:17235 original size:32 final size:33
Alignment explanation
Indices: 17177--17255 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
17167 GGAAATGGCT
*
17177 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
17210 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
17242 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
17256 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:17804 original size:18 final size:18
Alignment explanation
Indices: 17778--17822 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
17768 GTCGATCAGA
*
17778 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
17796 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
17814 TGATGGCTC
1 TGATGGCTC
17823 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:19168 original size:20 final size:20
Alignment explanation
Indices: 19143--19216 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
19133 AATAGTTTCT
19143 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
19163 GAAAATGACTATCGCAACAC
1 GAAAATGAAAATCGCAACAC
** *
19183 GAAAATGACTATCGCAACGC
1 GAAAATGAAAATCGCAACAC
*
19203 GAAACT-AAAATCGC
1 GAAAATGAAAATCGC
19217 GTTGCGATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 6 0.12
20 42 0.88
ACGTcount: A:0.47, C:0.23, G:0.16, T:0.14
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:19477 original size:22 final size:22
Alignment explanation
Indices: 19450--19493 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
19440 GATGGAGATA
19450 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
19472 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
19494 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:19706 original size:20 final size:20
Alignment explanation
Indices: 19681--19733 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
19671 GATTATGTAT
*
19681 TATCGCGTTGCGAAAGTTAG
1 TATCGCGTTGCGAAAGTAAG
19701 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTAAG
*
19721 TATCTCGTTGCGA
1 TATCGCGTTGCGA
19734 TTTTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTAAG
Found at i:19788 original size:20 final size:20
Alignment explanation
Indices: 19744--19836 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
19734 TTTTTTATTA
* **
19744 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
19765 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
19785 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
19806 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
19826 TCGCATTGCGA
1 TCGCATTGCGA
19837 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:19789 original size:41 final size:41
Alignment explanation
Indices: 19726--19836 Score: 188
Period size: 41 Copynumber: 2.7 Consensus size: 41
19716 GTAAGTATCT
*
19726 CGTTGCGATTT-TTTATTATCGCATTGCGATTTTCCCAATTCG
1 CGTTGCGATTTACTTA-T-TCGCATTGCGATTTTCCCAATTCG
19768 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
1 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
19809 CGTTGCGATTTACTTATTCGCATTGCGA
1 CGTTGCGATTTACTTATTCGCATTGCGA
19837 ATTGGGAAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
41 52 0.78
42 12 0.18
43 3 0.04
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (41 bp):
CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
Found at i:21074 original size:24 final size:24
Alignment explanation
Indices: 21029--21074 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
21019 TTAAAATTTG
* **
21029 TAAATATTATTATGTAAATAAAAA
1 TAAATATTATAATCCAAATAAAAA
*
21053 TAAATATTATAATCCAATTAAA
1 TAAATATTATAATCCAAATAAA
21075 TAAGTAAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (24 bp):
TAAATATTATAATCCAAATAAAAA
Found at i:21427 original size:14 final size:14
Alignment explanation
Indices: 21408--21441 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
21398 GCTAAACCAG
21408 AAATGCAGCAACGT
1 AAATGCAGCAACGT
21422 AAATGCAGCAACGT
1 AAATGCAGCAACGT
*
21436 GAATGC
1 AAATGC
21442 GATGAAGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.15
Consensus pattern (14 bp):
AAATGCAGCAACGT
Found at i:22356 original size:19 final size:21
Alignment explanation
Indices: 22332--22382 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22322 TTTTTATGTG
* *
22332 ATATATACTTA-TGATA-ATT
1 ATATATACTTATTAAAACATT
*
22351 ATATATACATATTAAAACATT
1 ATATATACTTATTAAAACATT
22372 ATATATACTTA
1 ATATATACTTA
22383 AATTGTATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 3 0.12
21 13 0.50
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (21 bp):
ATATATACTTATTAAAACATT
Found at i:30372 original size:14 final size:14
Alignment explanation
Indices: 30353--30380 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
30343 TATCATAGGA
30353 TAACCCTCCTAAGC
1 TAACCCTCCTAAGC
30367 TAACCCTCCTAAGC
1 TAACCCTCCTAAGC
30381 AGCATCCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.43, G:0.07, T:0.21
Consensus pattern (14 bp):
TAACCCTCCTAAGC
Found at i:31613 original size:21 final size:21
Alignment explanation
Indices: 31562--31614 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
31552 ATTATGACTA
31562 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
31583 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
31604 TCGCAATGCGA
1 TCGCAATGCGA
31615 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:31629 original size:20 final size:21
Alignment explanation
Indices: 31604--31655 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
31594 TTTTCCCAAT
*
31604 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
31624 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
31645 TCGCAATGCGA
1 TCGCAATGCGA
31656 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:31668 original size:41 final size:42
Alignment explanation
Indices: 31641--31776 Score: 138
Period size: 41 Copynumber: 3.3 Consensus size: 42
31631 GCGAATTTGG
31641 AAAATCGCAATGCGATACTGACTATCGCAACGCG-ATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGAATAATAC
* * *
31682 AAAATTGCAATGCGATACTGACTTTCGCAACGCG-ATACTTAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGAATA-ATAC
** ** * *
31724 --TTTCGCAACACGATACTGACTTTCGCAACGAG-ATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGAATAATAC
*
31763 ATAATCGCAATGCG
1 AAAATCGCAATGCG
31777 CTTTTCAAAG
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.04
40 29 0.37
41 43 0.55
42 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
AAAATCGCAATGCGATACTGACTATCGCAACGCGAATAATAC
Found at i:31669 original size:20 final size:20
Alignment explanation
Indices: 31644--31758 Score: 106
Period size: 20 Copynumber: 5.7 Consensus size: 20
31634 AATTTGGAAA
*
31644 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
31664 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
31685 ATTGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
31705 TTCGCAACGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* *
31725 TTCGCAACACGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
31745 TTCGCAACGAGATA
1 ATCGCAACGCGATA
31759 ATACATAATC
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
19 2 0.03
20 60 0.78
21 13 0.17
22 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:31971 original size:22 final size:22
Alignment explanation
Indices: 31945--31988 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31935 CACTCTCTCA
*
31945 CCCATCTTCGACGAAATCCGTC
1 CCCATCTACGACGAAATCCGTC
*
31967 CCCATCTACGGCGAAATCCGTC
1 CCCATCTACGACGAAATCCGTC
31989 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.41, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCATCTACGACGAAATCCGTC
Found at i:32300 original size:20 final size:20
Alignment explanation
Indices: 32251--32309 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
32241 TTTATTCTCT
* **
32251 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
32271 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
32291 TGTTGCGATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
32310 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:32500 original size:25 final size:24
Alignment explanation
Indices: 32446--32500 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
32436 TGTTTATTAT
* *
32446 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
32470 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
32496 TGTTT
1 TGTTT
32501 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:33190 original size:14 final size:14
Alignment explanation
Indices: 33156--33194 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
33146 TTGATTGTTT
33156 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
33170 AACTGATTTGTAAA
1 AATTGATTTGTAAA
**
33184 TGTTGATTTGT
1 AATTGATTTGT
33195 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:33423 original size:20 final size:20
Alignment explanation
Indices: 33398--33453 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
33388 TCGCGTTGCA
33398 ATTTTCTCGTTGCGATAGCC
1 ATTTTCTCGTTGCGATAGCC
*
33418 ATTTTCGT-GTTGCGATAGTC
1 ATTTTC-TCGTTGCGATAGCC
* *
33438 ATTTTCGCGTTACGAT
1 ATTTTCTCGTTGCGAT
33454 TTCCCCGTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.43
Consensus pattern (20 bp):
ATTTTCTCGTTGCGATAGCC
Found at i:34029 original size:20 final size:20
Alignment explanation
Indices: 34000--34052 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
33990 ATTTTGTATT
*
34000 ATCTCGTTGCGATAGTTAGA
1 ATCTCGTTGCGATAGTCAGA
* *
34020 ATCTCATTGCGAAAGTCAGA
1 ATCTCGTTGCGATAGTCAGA
*
34040 ATCACGTTGCGAT
1 ATCTCGTTGCGAT
34053 TTTGTATTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (20 bp):
ATCTCGTTGCGATAGTCAGA
Found at i:34126 original size:20 final size:21
Alignment explanation
Indices: 34082--34133 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
34072 ATAGTCAGTA
*
34082 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
34103 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
34123 TCGCATTGCGA
1 TCGCATTGCGA
34134 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:34175 original size:21 final size:22
Alignment explanation
Indices: 34123--34175 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
34113 ATTTACTTAT
34123 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
* **
34144 TCGTAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
34165 TCGCATTGCGA
1 TCGCATTGCGA
34176 TAGTCATAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:46743 original size:20 final size:20
Alignment explanation
Indices: 46704--46743 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46694 ATTTAATAAA
* **
46704 TTATTTATTTTTTAGTTTTT
1 TTATTTATTTTTAACATTTT
46724 TTATTTATTTTTAACATTTT
1 TTATTTATTTTTAACATTTT
46744 GATAATTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (20 bp):
TTATTTATTTTTAACATTTT
Found at i:47975 original size:13 final size:13
Alignment explanation
Indices: 47957--47987 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
47947 TGGTTGTTGG
47957 TACATTTTTCGCA
1 TACATTTTTCGCA
47970 TACATTTTTCGCA
1 TACATTTTTCGCA
47983 TACAT
1 TACAT
47988 ATGAGGTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.45
Consensus pattern (13 bp):
TACATTTTTCGCA
Found at i:51949 original size:26 final size:24
Alignment explanation
Indices: 51903--51953 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
51893 TTTGGGGTGC
*
51903 TAGAAAATTAGACTCCGTTTACTTT
1 TAGAAAATTAGACTACGTTTA-TTT
**
51928 TAGAAAATATAGACTATTTTTATTT
1 TAGAAAAT-TAGACTACGTTTATTT
51953 T
1 T
51954 CATTTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (24 bp):
TAGAAAATTAGACTACGTTTATTT
Found at i:52364 original size:17 final size:17
Alignment explanation
Indices: 52344--52379 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
52334 TTAAAATTAA
*
52344 ATATTTTTTAATTGTTT
1 ATATTTTTTAATTGATT
52361 ATATTTTTTAATTGATT
1 ATATTTTTTAATTGATT
52378 AT
1 AT
52380 TTATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
ATATTTTTTAATTGATT
Found at i:52381 original size:32 final size:32
Alignment explanation
Indices: 52320--52388 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
52310 AATATCATAA
*
52320 TAATTGTTTATATTTTAAAATTAAATATTTTT
1 TAATTGTTTATATTTTAAAATTAAATATTTAT
** * *
52352 TAATTGTTTATATTTTTTAATTGATTATTTAT
1 TAATTGTTTATATTTTAAAATTAAATATTTAT
52384 TAATT
1 TAATT
52389 TACATAATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (32 bp):
TAATTGTTTATATTTTAAAATTAAATATTTAT
Found at i:52410 original size:20 final size:20
Alignment explanation
Indices: 52351--52410 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
52341 TAAATATTTT
*
52351 TTAATTGTTTATATTTTTTAA
1 TTAATTATTTATA-TTTTTAA
* *
52372 TTGATTATTTAT-TAATTTACA
1 TTAATTATTTATAT-TTTTA-A
52393 -TAATTATTTATATTTTTA
1 TTAATTATTTATATTTTTA
52411 TATTTATAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 1 0.03
20 18 0.58
21 12 0.39
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (20 bp):
TTAATTATTTATATTTTTAA
Found at i:53447 original size:27 final size:27
Alignment explanation
Indices: 53414--53480 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
53404 TATGTAATAT
*
53414 TTTTTAACAATTA-TAGTTTAATTTAA
1 TTTTTAAAAATTATTAGTTTAATTTAA
* * * *
53440 TTATTTAATAACTATTTGTTTAATTTTA
1 TT-TTTAAAAATTATTAGTTTAATTTAA
53468 TTTTTAAAAATTA
1 TTTTTAAAAATTA
53481 GATATTAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 2 0.06
27 18 0.55
28 13 0.39
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
TTTTTAAAAATTATTAGTTTAATTTAA
Found at i:63583 original size:23 final size:23
Alignment explanation
Indices: 63557--63617 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
63547 CTCGTATAAA
*
63557 TGCACCAAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
63580 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
63603 TGCACCGTAGTGCCA
1 TGCACCGAAGTGCCA
63618 TATTAGATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:64300 original size:63 final size:64
Alignment explanation
Indices: 64225--64344 Score: 165
Period size: 63 Copynumber: 1.9 Consensus size: 64
64215 GCACCACACC
*
64225 ATGCATCGATGCATAAAT-GCTATTCGATGTTTATA-TTT-AAGGAGGTGCATCGATGCACTCCT
1 ATGCATCGATGCATAAATGGC-ATTCGATGTTTATATTTTAAAAGA-GTGCATCGATGCACTCCT
64287 T
64 T
** *
64288 ATGCATCGATGCATTGATGGCATTCGATGTTTTTATTTTAAAAGAGTGCATCGATGC
1 ATGCATCGATGCATAAATGGCATTCGATGTTTATATTTTAAAAGAGTGCATCGATGC
64345 GCTTCATGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
63 29 0.58
64 17 0.34
65 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (64 bp):
ATGCATCGATGCATAAATGGCATTCGATGTTTATATTTTAAAAGAGTGCATCGATGCACTCCTT
Found at i:64361 original size:64 final size:63
Alignment explanation
Indices: 64206--64361 Score: 165
Period size: 64 Copynumber: 2.4 Consensus size: 63
64196 AATGAAGGTA
* *
64206 TGCATCGATGCAC-CACACCATGCATCGATGCATAAATGCTATTCGATGTTTATATTTAAGGAGG
1 TGCATCGATGCACTC-CA-TATGCATCGATGCATAAATGCTATTCGATGTTTATATTTAAAGAGG
* ** *
64270 TGCATCGATGCACTCCTTATGCATCGATGCATTGATGGC-ATTCGATGTTTTTATTTTAAA-AGA
1 TGCATCGATGCACTCCATATGCATCGATGCATAAAT-GCTATTCGATGTTTATA-TTTAAAGAG-
64333 G
63 G
* * *
64334 TGCATCGATGCGCTTCATGTGCATCGAT
1 TGCATCGATGCACTCCATATGCATCGAT
64362 ACACCTCGAA
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
63 31 0.40
64 46 0.59
65 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (63 bp):
TGCATCGATGCACTCCATATGCATCGATGCATAAATGCTATTCGATGTTTATATTTAAAGAGG
Found at i:65365 original size:13 final size:13
Alignment explanation
Indices: 65333--65379 Score: 62
Period size: 12 Copynumber: 3.7 Consensus size: 13
65323 ATCAAATAAC
*
65333 ATAATTGAAAAAAT
1 ATAATT-AAAAATT
65347 AT-ATTAAAAATT
1 ATAATTAAAAATT
65359 ATAATT-AAAATT
1 ATAATTAAAAATT
65371 ATAATTAAA
1 ATAATTAAA
65380 TTTCAAATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 20 0.67
13 8 0.27
14 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (13 bp):
ATAATTAAAAATT
Found at i:65526 original size:2 final size:2
Alignment explanation
Indices: 65519--65543 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65509 ATATAAAATA
65519 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
65544 ATAAACTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66937 original size:64 final size:64
Alignment explanation
Indices: 66863--67025 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 64
66853 CGGTGCACCA
*
66863 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** * **
66927 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * *
66992 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
67026 CAATTAATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
64 39 0.46
65 46 0.54
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (64 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:66997 original size:19 final size:19
Alignment explanation
Indices: 66973--67023 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
66963 GAAAATATTC
66973 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
66992 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
67011 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
67024 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:67065 original size:65 final size:65
Alignment explanation
Indices: 66867--67074 Score: 207
Period size: 65 Copynumber: 3.2 Consensus size: 65
66857 GCACCAAGTG
* * ** *
66867 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG-CTT
1 TGCATCGGTGCATGAAATGCATTCGATGTTT-CAAAATATTCAGAGTGCATCGATGCATGGAC-T
66930 G-
64 GA
* * *
66931 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA--G
1 TGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAATATTCAGAGTGCATCGATGCATGGACTG
66994 A
65 A
* *
66995 GTGCATCGGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGA-TGCATCGATGCATGGA
1 -TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GAGTGCATCGATGCATGGA
67057 CTGA
62 CTGA
67061 TGCATCGGTGCATG
1 TGCATCGGTGCATG
67075 CCTTTGAATA
Statistics
Matches: 124, Mismatches: 10, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.02
63 8 0.06
64 51 0.41
65 60 0.48
66 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (65 bp):
TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGAGTGCATCGATGCATGGACTGA
Found at i:72436 original size:22 final size:21
Alignment explanation
Indices: 72395--72441 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
72385 GAATTTGTTT
*
72395 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
72416 TCATTTTT-ATATTTTAAAA-A
1 TCATTTTTCA-ATTTTAAAACA
72436 -CATTTT
1 TCATTTT
72442 CTCATAATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 16 0.67
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:74428 original size:64 final size:64
Alignment explanation
Indices: 74375--74537 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 64
74365 CGGTGCACCA
*
74375 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** * **
74439 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * *
74504 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
74538 CAATTAATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
64 39 0.46
65 46 0.54
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (64 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:74509 original size:19 final size:19
Alignment explanation
Indices: 74485--74535 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
74475 GAAAATATTC
74485 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
74504 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
74523 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
74536 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:74577 original size:65 final size:65
Alignment explanation
Indices: 74379--74586 Score: 207
Period size: 65 Copynumber: 3.2 Consensus size: 65
74369 GCACCAAGTG
* * ** *
74379 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG-CTT
1 TGCATCGGTGCATGAAATGCATTCGATGTTT-CAAAATATTCAGAGTGCATCGATGCATGGAC-T
74442 G-
64 GA
* * *
74443 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA--G
1 TGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAATATTCAGAGTGCATCGATGCATGGACTG
74506 A
65 A
* *
74507 GTGCATCGGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGA-TGCATCGATGCATGGA
1 -TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GAGTGCATCGATGCATGGA
74569 CTGA
62 CTGA
74573 TGCATCGGTGCATG
1 TGCATCGGTGCATG
74587 CCTTTGAATA
Statistics
Matches: 124, Mismatches: 10, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.02
63 8 0.06
64 51 0.41
65 60 0.48
66 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (65 bp):
TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGAGTGCATCGATGCATGGACTGA
Found at i:75474 original size:30 final size:30
Alignment explanation
Indices: 75438--75497 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
75428 TTTTAATTTC
75438 TTCAAAGATTTAATCCTGTTATAGAATACG
1 TTCAAAGATTTAATCCTGTTATAGAATACG
75468 TTCAAAGATTTAATCCTGTTATAGAATACG
1 TTCAAAGATTTAATCCTGTTATAGAATACG
75498 AATTCACTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (30 bp):
TTCAAAGATTTAATCCTGTTATAGAATACG
Found at i:86499 original size:47 final size:47
Alignment explanation
Indices: 86395--86485 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
86385 GGGTATATAT
* *
86395 ATTTAAATTAAATATATAAATATTATATATATATATATTTTAATTTA
1 ATTTAAATTTAATATATAAATATTATATATATATATATTATAATTTA
* *
86442 ATTTAAATTTAATTTATTAATATTATATATATATATA-TATAATT
1 ATTTAAATTTAATATATAAATATTATATATATATATATTATAATT
86486 ATTTTTAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 6 0.15
47 34 0.85
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (47 bp):
ATTTAAATTTAATATATAAATATTATATATATATATATTATAATTTA
Found at i:86515 original size:12 final size:12
Alignment explanation
Indices: 86498--86542 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
86488 TTTTAATATT
86498 TATCGGGTCGGG
1 TATCGGGTCGGG
*
86510 TATCGGGTCGGA
1 TATCGGGTCGGG
*
86522 TATCGGGGCGGG
1 TATCGGGTCGGG
86534 TAATCGGGT
1 T-ATCGGGT
86543 AACCGGGGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 22 0.79
13 6 0.21
ACGTcount: A:0.13, C:0.16, G:0.47, T:0.24
Consensus pattern (12 bp):
TATCGGGTCGGG
Found at i:88715 original size:18 final size:17
Alignment explanation
Indices: 88692--88734 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
88682 ATATATACAT
88692 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
88710 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
88727 ATAA-AATA
1 ATAATAATA
88735 TCCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:89169 original size:37 final size:36
Alignment explanation
Indices: 89126--89227 Score: 172
Period size: 34 Copynumber: 2.9 Consensus size: 36
89116 ATAGTAGAAC
89126 TCTATCCTATTTTTAGGAGTTTGAATCCTAGCAAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG-AAAAT
*
89163 TTTATCCTATTTTTAGGAGTTTGAATCCT--AAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
89197 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
89228 TAGGACGAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
34 33 0.54
37 28 0.46
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (36 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
Found at i:90074 original size:105 final size:105
Alignment explanation
Indices: 89775--90390 Score: 965
Period size: 105 Copynumber: 5.9 Consensus size: 105
89765 CATTGTTCCA
* * * ** *
89775 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGTTCTG-GAACCGGGAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-ATTGGGAAGTTG-TTGTTGACAA
* * * * *
89839 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
64 GCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** *
89881 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCTGA-A-TGAG-A-TT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
89941 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
89981 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTTAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
90046 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
90086 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
*
90151 GGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
90191 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGAAAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
90256 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
90296 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAAG
* *
90361 CAGCCGTCCCTTCGTTGTGAAGTTGAACTT
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTT
90391 ATGTTGCCTC
Statistics
Matches: 478, Mismatches: 25, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
100 84 0.18
101 1 0.00
102 5 0.01
103 2 0.00
104 4 0.01
105 310 0.65
106 72 0.15
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:91342 original size:67 final size:67
Alignment explanation
Indices: 91262--91420 Score: 241
Period size: 67 Copynumber: 2.4 Consensus size: 67
91252 GAAACGAAAT
* *
91262 TTTGTTTTAAGGGAGATA-AAT-TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGAC
1 TTTGTTTCAAGGGA-A-ACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
91325 AAAA
64 AAAA
* *
91329 TTTGTTTCGAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
1 TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
91394 AA
66 AA
*
91396 TTTGTTTCAAGGGAAACTATCTCAA
1 TTTGTTTCAAGGGAAACAATCTCAA
91421 GAGAGACGAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
65 1 0.01
66 4 0.05
67 79 0.94
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (67 bp):
TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
AA
Found at i:91345 original size:36 final size:36
Alignment explanation
Indices: 91295--91921 Score: 213
Period size: 36 Copynumber: 18.4 Consensus size: 36
91285 AAAGATTTTG
* *
91295 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
* ** ***
91331 TGTTTCGAGGGAAACAATCTCAA---AG---GTTTT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
*
91361 GTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
1 -TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
* * *
91398 TGTTTCAAGGGAAACTATCTCAAGAGAGACGAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
** * * *
91434 CATTTCAAGGGAAA-TGTTTTCAA---TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGGGAGACAAAATT
*
91462 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-TT
* * *
91500 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
** * * *
91536 CATTTCAAGGGAAA-TGTTTTCAA---TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGGGAGACAAAATT
* *
91564 ATGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-TT
* *
91602 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
** * **
91638 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAA-AATT
* * * * *
91666 ATGTTTCAAGAGAAATTGTCTCAATGGAGACGGAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGGGAGAC-AAAATT
* * *
91704 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
** * * *
91740 CATTTCAAGGGAAA-TGTTTTCAA---TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGGGAGACAAAATT
* *
91768 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-TT
** * * *
91806 TGTACCAAGGGAAA-TGTTTTCAA---TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGGGAGACAAAATT
*
91834 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-TT
* *
91872 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
**
91908 CATTTCAAGGGAAA
1 TGTTTCAAGGGAAA
91922 TGTTTTCAAT
Statistics
Matches: 422, Mismatches: 102, Indels: 134
0.64 0.16 0.20
Matches are distributed among these distances:
27 3 0.01
28 9 0.02
29 75 0.18
30 15 0.04
31 19 0.05
32 4 0.01
33 5 0.01
34 3 0.01
35 7 0.02
36 135 0.32
37 134 0.32
38 12 0.03
39 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
Found at i:91514 original size:37 final size:37
Alignment explanation
Indices: 91463--91921 Score: 189
Period size: 37 Copynumber: 13.4 Consensus size: 37
91453 TCAATGTTTA
* *
91463 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
91500 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
91536 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
*
91564 ATGTTTCAAGAGAAACTGTCTCAATG-GAGACAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAA-GAGAGACAAAATTT
*
91602 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * **
91638 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* * **
91666 ATGTTTCAAGAGAAATTGTCTCAATG-GAGACGGAATTT
1 -TGTTTCAAGGGAAACTGTCTCAA-GAGAGACAAAATTT
* *
91704 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
91740 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * *
91768 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
91806 TGTACCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* *
91834 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
*
91872 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
**
91908 CATTTCAAGGGAAA
1 TGTTTCAAGGGAAA
91922 TGTTTTCAAT
Statistics
Matches: 304, Mismatches: 66, Indels: 105
0.64 0.14 0.22
Matches are distributed among these distances:
27 3 0.01
28 8 0.03
29 53 0.17
30 14 0.05
32 3 0.01
33 2 0.01
34 3 0.01
35 8 0.03
36 65 0.21
37 132 0.43
38 13 0.04
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:91537 original size:102 final size:102
Alignment explanation
Indices: 91362--91819 Score: 801
Period size: 102 Copynumber: 4.5 Consensus size: 102
91352 AAAGGTTTTG
91362 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
91426 ACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
91463 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCGAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
91528 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
91565 TGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
91630 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * **
91667 TGTTTCAAGAGAAATTGTCTCAATGGAGACGGAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
91732 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* **
91769 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTACCAAGGGAAA
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAA
91820 TGTTTTCAAT
Statistics
Matches: 339, Mismatches: 17, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
101 34 0.10
102 305 0.90
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:91817 original size:168 final size:166
Alignment explanation
Indices: 91602--91970 Score: 587
Period size: 168 Copynumber: 2.2 Consensus size: 166
91592 GACAAAATTT
* *
91602 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT-ATTTCAAGGGAAATGTTTCCAATGTTTA
* * **
91667 TGTTTCAAGAGAAATTGTCTCAATGGAGACGGAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
65 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
91732 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
130 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
91769 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATT-TTGTACCAAGGGAAATGTTTTCAATGTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTATT-T--CAAGGGAAATGTTTCCAATGTT
91833 TATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAG
63 TATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAG
*
91898 AGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
128 AGACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
91937 TGTTTAAAGAGAAACTGTCTCAAGTGAGACAAAA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
91971 CTTTCTGTTT
Statistics
Matches: 186, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
165 2 0.01
166 1 0.01
167 32 0.17
168 151 0.81
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (166 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTATTTCAAGGGAAATGTTTCCAATGTTTAT
GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGA
CAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:91832 original size:66 final size:66
Alignment explanation
Indices: 91745--91885 Score: 255
Period size: 66 Copynumber: 2.1 Consensus size: 66
91735 AAACTCATTT
91745 CAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTA
1 CAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTA
91810 C
66 C
* *
91811 CAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTT
1 CAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTA
*
91876 T
66 C
91877 CAAGGGAAA
1 CAAGGGAAA
91886 CTATCTCAAG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 72 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (66 bp):
CAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTA
C
Found at i:91947 original size:102 final size:104
Alignment explanation
Indices: 91769--92015 Score: 340
Period size: 102 Copynumber: 2.4 Consensus size: 104
91759 TCAATGTTTA
* * *
91769 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTACCAAGGGAAATGTTTTCAATGTTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATTTTGTA-CAAGGGAAATGTTTTCAATGTTT
*
91834 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTT-
65 ATGTTTAAAGAGAAACTGTCTCAAGGGAGACAAAACTTTC
*
91872 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATT-T-CAAGGGAAATGTTTTCAATGTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATT--TTGTACAAGGGAAATGTTTTCAATGTT
*
91935 TATGTTTAAAGAGAAACTGTCTCAAGTGAGACAAAACTTTC
64 TATGTTTAAAGAGAAACTGTCTCAAGGGAGACAAAACTTTC
* * * * *
91976 TGTTTCGAGGGAAATTATCTCAAGCGAGATAAAATCTTGT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATTTTGT
92016 TTTAAGAAAA
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
102 58 0.45
103 36 0.28
104 32 0.25
105 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (104 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATTTTGTACAAGGGAAATGTTTTCAATGTTTA
TGTTTAAAGAGAAACTGTCTCAAGGGAGACAAAACTTTC
Found at i:93518 original size:183 final size:183
Alignment explanation
Indices: 93210--93559 Score: 619
Period size: 183 Copynumber: 1.9 Consensus size: 183
93200 GGTTTAACTA
*
93210 AAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGTAGTGGAGCAAACACCGAATTGCCA
1 AAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATTGCCA
* **
93275 AGTGTACGAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGTTTCCT
66 AGTGTACGAGCAATGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTTTCCT
93340 CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATCACTG
131 CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATCACTG
* *
93393 AAGGGTTCGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACTGAATTGCCA
1 AAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATTGCCA
* *
93458 AGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTTTCCT
66 AGTGTACGAGCAATGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTTTCCT
*
93523 CTATAACCAATTGCCTTAGTGGAATAGCTCAGTTTTA
131 CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
93560 CGGGTTTAAT
Statistics
Matches: 158, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 158 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (183 bp):
AAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATTGCCA
AGTGTACGAGCAATGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTTTCCT
CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATCACTG
Found at i:97601 original size:2 final size:2
Alignment explanation
Indices: 97596--97620 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97586 AAATATTATT
97596 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97621 TTCTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105156 original size:16 final size:16
Alignment explanation
Indices: 105137--105170 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105127 CAATATACGA
105137 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
105153 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
105169 AT
1 AT
105171 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:105244 original size:16 final size:18
Alignment explanation
Indices: 105212--105245 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
105202 TATTAATGTA
105212 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
105230 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
105246 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:105859 original size:16 final size:16
Alignment explanation
Indices: 105840--105873 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105830 CAATATACGA
105840 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
105856 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
105872 AT
1 AT
105874 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:105947 original size:16 final size:18
Alignment explanation
Indices: 105915--105948 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
105905 TATTAATGTA
105915 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
105933 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
105949 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:105964 original size:703 final size:707
Alignment explanation
Indices: 104747--107566 Score: 5381
Period size: 705 Copynumber: 4.0 Consensus size: 707
104737 CATAATATTA
* * * *
104747 AGGGTACAGTATAGTAATGATCACTGAACATTTCTGAAGCTTACATTTAGGTCCCTCAACTTTTA
1 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
* *
104812 AAATTTGCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGGTCCCCCAACTTAAATCACT
66 AAACTTGCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGATCCCCCAACTTAAATCACT
*
104877 GTTAGAAAATTAGGGTAAATTATATACACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
131 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
*
104942 CTAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
196 CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
105007 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
261 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
105072 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
326 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
105137 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
391 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
105202 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
456 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
105267 ATTATATTAGAAATACTCAACTTAAGA-T-TATATAT-ATCATGAATTATAAATATGAAAATATA
521 ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATGAAAA-ATA
105329 TAATTATTAAATTTAGTTT-AAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAA
585 TAATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAA
*
105393 CTAATATTTAAAAAATATATTAAATCTATCAAACAATTTATCAAATATAATGTTTTTT
650 CTAATATTTAAAAAATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
*
105451 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCTAACTTTTA
1 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
*
105516 AAACTTGCAATACAGTCCCCCAACATTTATTCCGTTTGCAATATGAT-CCCCAACTTAAATCACT
66 AAACTTGCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGATCCCCCAACTTAAATCACT
*
105580 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCT
131 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
*
105645 CAAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
196 CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
105710 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
261 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
105775 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
326 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
*
105840 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAATATATATTCATA
391 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
105905 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
456 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
105970 ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATGAAAAATAT
521 ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATGAAAAATAT
106035 AATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
586 AATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
*
106100 TAATATTTAAAAGATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
651 TAATATTTAAAAAATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
106157 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
1 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
* *
106222 AAACTTACAATACAGTCTCCCAACATTTATTTCGTTTGCAATATGATCCCCCAACTTAAATCACT
66 AAACTTGCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGATCCCCCAACTTAAATCACT
106287 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
131 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
106352 CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
196 CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
106417 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
261 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
106482 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
326 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
106547 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
391 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
106612 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
456 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
106677 ATTATATTAGAAATACTCAACTTAAGA-T-TATATATAATCATGAATTATAAATATGAAAAATAT
521 ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATGAAAAATAT
106740 AATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
586 AATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
*
106805 TAATATTTAAAAGATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
651 TAATATTTAAAAAATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
106862 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
1 AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
*
106927 AAACTTTCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGATCCCCCAACTTAAATCACT
66 AAACTTGCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGATCCCCCAACTTAAATCACT
106992 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
131 GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
107057 CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
196 CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
107122 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
261 AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
107187 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
326 TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
107252 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
391 ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
107317 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
456 TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
107382 ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATG-AAAATAT
521 ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATGAAAAATAT
107446 AATTATTAAATTTAGTTT-AAAA-ATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
586 AATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
*
107509 TAATATTTAAAAAATATATTAAATCTATCAAACAATTTATTAAATATAATATTTTTT
651 TAATATTTAAAAAATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
107566 A
1 A
107567 TTGTAAAAAA
Statistics
Matches: 2084, Mismatches: 25, Indels: 14
0.98 0.01 0.01
Matches are distributed among these distances:
703 430 0.21
704 202 0.10
705 735 0.35
706 259 0.12
707 458 0.22
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (707 bp):
AGGGTAAAGTATAGTAATGGTCACTGAACATTTCTGAAGCTTGCATTTAGGTCCCCCAACTTTTA
AAACTTGCAATACAGTCTCCCAACATTTATTCCGTTTGCAATATGATCCCCCAACTTAAATCACT
GTTAGAAAATTAGGGTAAATTATATAAACGGTCATTGAACTTTTCAGGCACTTGAATTTAGGTCC
CCAACTTTTAAAACTTGCAAAACAGTCCCCCAATAATTTTATTTTCTTATTAAATATAGATGTAT
AGAAAATATAAATGATTCAATTTATATTTAAATGTATGAATCATTTATATTTTTGATATATTTTA
TTTTTCTTGTATAAACTAGTATTTAAAATATGTTTATATTTTAATCAAAATATTTCAATATACGA
ATAAAAATATATTTATATAAATGTATATTTATATTTAGATGTATAAATAAAAAAATATATTCATA
TATTAATGTATGAATCATTTATATTTTTTGAATATTTTATTTTTAATAAGAAATTAAAATTATTA
ATTATATTAGAAATACTCAACTTAAGATTATATATATAATCATGAATTATAAATATGAAAAATAT
AATTATTAAATTTAGTTTAAAAATATATAAATCTTAAATTTATTCTTTTAAAATATTGTATCAAC
TAATATTTAAAAAATATATTAAATCTATCAAACAATTTATCAAATATAATATTTTTT
Found at i:106566 original size:16 final size:16
Alignment explanation
Indices: 106547--106580 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106537 CAATATACGA
106547 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
106563 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
106579 AT
1 AT
106581 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:106654 original size:16 final size:18
Alignment explanation
Indices: 106622--106655 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
106612 TATTAATGTA
106622 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
106640 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
106656 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:107271 original size:16 final size:16
Alignment explanation
Indices: 107252--107285 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107242 CAATATACGA
107252 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
107268 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
107284 AT
1 AT
107286 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:107359 original size:16 final size:18
Alignment explanation
Indices: 107327--107360 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
107317 TATTAATGTA
107327 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
107345 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
107361 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:108030 original size:130 final size:130
Alignment explanation
Indices: 107826--108073 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
107816 AATTTTCTTC
* *
107826 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTTAACACATGTCAAAT
** *
107891 CCTGGTTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
107956 TAATTAGGTGGTGACATGTGTCACCAATGACACGTGTCATGATCATGTGTTAACACATGTCAAAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTTAACACATGTCAAAT
*
108021 CTTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
108074 TATATAAATA
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (130 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTTAACACATGTCAAAT
CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:108521 original size:35 final size:35
Alignment explanation
Indices: 108470--108543 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
108460 AATTGAATTT
* * * *
108470 AATTGAATTATTTTGGAATTTAGGGTTTGGAATGA
1 AATTAAATTACTTTGGAAATTAGGGTTTAGAATGA
*
108505 AATTAAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTAAATTACTTTGGAAATTAGGGTTTAGAATGA
108540 AATT
1 AATT
108544 GAGGACTGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.01, G:0.23, T:0.41
Consensus pattern (35 bp):
AATTAAATTACTTTGGAAATTAGGGTTTAGAATGA
Found at i:109241 original size:130 final size:130
Alignment explanation
Indices: 109037--109284 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
109027 AATTTTCTTC
* * *
109037 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTAAGAT
** *
109102 CCTGGTTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
109167 TAATTAGGTGGTGACATGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTAAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTAAGAT
109232 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
109285 TATATAAATA
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (130 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTAAGAT
CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:109743 original size:35 final size:36
Alignment explanation
Indices: 109681--109757 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 36
109671 AATTGAATTT
* *
109681 AATTGAATTATTTTTGGAATTTAGGGTTTAGAATGA
1 AATTGAATTATCTTTGGAAATTAGGGTTTAGAATGA
*
109717 AATTGAATTA-CTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTATCTTTGGAAATTAGGGTTTAGAATGA
109752 AATTGA
1 AATTGA
109758 GGACTGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 28 0.74
36 10 0.26
ACGTcount: A:0.35, C:0.01, G:0.23, T:0.40
Consensus pattern (36 bp):
AATTGAATTATCTTTGGAAATTAGGGTTTAGAATGA
Found at i:117938 original size:34 final size:34
Alignment explanation
Indices: 117898--117963 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
117888 GATTGTCCAG
*
117898 GGGGTATCGATTCCCCTGGAACAGATTCCCCCCA
1 GGGGTATCGATTCCCCGGGAACAGATTCCCCCCA
*
117932 GGGGTATCGATTCCCCGGGTACAGATTCCCCC
1 GGGGTATCGATTCCCCGGGAACAGATTCCCCC
117964 TGCATGGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (34 bp):
GGGGTATCGATTCCCCGGGAACAGATTCCCCCCA
Found at i:118179 original size:21 final size:21
Alignment explanation
Indices: 118146--118185 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
118136 TTTTTGCAGA
*
118146 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
118168 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
118186 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:118439 original size:34 final size:32
Alignment explanation
Indices: 118400--118469 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
118390 TTTTGTAAAG
*
118400 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
118434 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
118466 GGGA
1 GGGA
118470 GTTTGTAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.21
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:121488 original size:34 final size:34
Alignment explanation
Indices: 121448--121513 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
121438 GATTGTCCAG
*
121448 GGGGTATCGATTCCCCTGGAACAGATTCCCCCCA
1 GGGGTATCGATTCCCCGGGAACAGATTCCCCCCA
*
121482 GGGGTATCGATTCCCCGGGTACAGATTCCCCC
1 GGGGTATCGATTCCCCGGGAACAGATTCCCCC
121514 TGCATGGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (34 bp):
GGGGTATCGATTCCCCGGGAACAGATTCCCCCCA
Found at i:121729 original size:21 final size:21
Alignment explanation
Indices: 121696--121735 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
121686 TTTTTGCAGA
*
121696 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
121718 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
121736 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:121989 original size:34 final size:32
Alignment explanation
Indices: 121950--122019 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
121940 TTTTGTAAAG
*
121950 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
121984 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
122016 GGGA
1 GGGA
122020 GTTTGTAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.21
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:127864 original size:18 final size:18
Alignment explanation
Indices: 127841--127878 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
127831 TCTTCCGACT
127841 ATTAAAAGTTACAAAATG
1 ATTAAAAGTTACAAAATG
127859 ATTAAAAGTTACAAAATG
1 ATTAAAAGTTACAAAATG
127877 AT
1 AT
127879 CTTCCGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.29
Consensus pattern (18 bp):
ATTAAAAGTTACAAAATG
Found at i:140703 original size:27 final size:27
Alignment explanation
Indices: 140639--140704 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
140629 TGCAGCGGGG
*
140639 GCAGTTGCCCCTCTTGAAAATCTGAAT
1 GCAGTTGTCCCTCTTGAAAATCTGAAT
***
140666 GCAGCCATCCCTCTTGAAAATCTGAAT
1 GCAGTTGTCCCTCTTGAAAATCTGAAT
140693 GCAGTTGTCCCT
1 GCAGTTGTCCCT
140705 AGAATTTTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
GCAGTTGTCCCTCTTGAAAATCTGAAT
Found at i:143324 original size:30 final size:29
Alignment explanation
Indices: 143280--143352 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
143270 TTTCATTTAA
* *
143280 GTACCTAAAATATTTTTTTGGTCAAAATAC
1 GTACCTAAAGTATTTTTTT-ATCAAAATAC
* *
143310 GTACATAAAGTA-TTTTTTATCAAAATAT
1 GTACCTAAAGTATTTTTTTATCAAAATAC
143338 GTACCTAAAGTATTT
1 GTACCTAAAGTATTT
143353 AATTTTTTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 19 0.51
29 8 0.22
30 10 0.27
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (29 bp):
GTACCTAAAGTATTTTTTTATCAAAATAC
Found at i:143466 original size:27 final size:27
Alignment explanation
Indices: 143431--143482 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
143421 TGAAAAATTG
*
143431 AATAGTTTAGGTACCTATTTTGACATA
1 AATAGTTTACGTACCTATTTTGACATA
* *
143458 AATATTTTACGTACTTATTTTGACA
1 AATAGTTTACGTACCTATTTTGACA
143483 AAAAAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (27 bp):
AATAGTTTACGTACCTATTTTGACATA
Found at i:143506 original size:31 final size:29
Alignment explanation
Indices: 143431--143534 Score: 95
Period size: 31 Copynumber: 3.6 Consensus size: 29
143421 TGAAAAATTG
* * * *
143431 AATAGTTTAGGTACCTATTTTGAC--ATA
1 AATACTTTAGGTACTTATTTTAACAAAAA
* * *
143458 AATATTTTACGTACTTATTTTGACAAAAA
1 AATACTTTAGGTACTTATTTTAACAAAAA
*
143487 AAGTCACTTTAGGTACTTATTTTAACCAAAA
1 AA-T-ACTTTAGGTACTTATTTTAACAAAAA
*
143518 AATTCTTTAGGTACTTA
1 AATACTTTAGGTACTTA
143535 AATGAAAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
27 21 0.33
29 17 0.27
30 2 0.03
31 24 0.38
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (29 bp):
AATACTTTAGGTACTTATTTTAACAAAAA
Found at i:143740 original size:31 final size:31
Alignment explanation
Indices: 143705--143770 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
143695 AATATAAGGT
* * *
143705 CACTTTCATTTTTCTTTAATTTAGATTTAGG
1 CACTTTCATTTTTATTTAATTAAGATGTAGG
** *
143736 CACTTTTGTTTTTATTTAATTAAGATGTAGT
1 CACTTTCATTTTTATTTAATTAAGATGTAGG
143767 CACT
1 CACT
143771 AAAGATTAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.53
Consensus pattern (31 bp):
CACTTTCATTTTTATTTAATTAAGATGTAGG
Found at i:145007 original size:21 final size:22
Alignment explanation
Indices: 144983--145028 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
144973 AAATAATACA
* *
144983 AAAAG-TCAAATATATAAAAAT
1 AAAAGATCAAACAGATAAAAAT
*
145004 AAAAGATTAAACAGATAAAAAT
1 AAAAGATCAAACAGATAAAAAT
145026 AAA
1 AAA
145029 GAGAAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.70, C:0.04, G:0.07, T:0.20
Consensus pattern (22 bp):
AAAAGATCAAACAGATAAAAAT
Found at i:146713 original size:37 final size:37
Alignment explanation
Indices: 146651--146778 Score: 125
Period size: 37 Copynumber: 3.4 Consensus size: 37
146641 ATTATATTCC
*
146651 AATTGATTATAAATTTGTAATAATAATATTTTCTTATTTT
1 AATTGAATATAAA-TT-TAA-AATAATATTTTCTTATTTT
146691 AATTGAATATAAATTTAAAATAATATATTT-TTA-TTT
1 AATTGAATATAAATTTAAAATAATAT-TTTCTTATTTT
** * * * *
146727 AATAAAATATAAATTTATAAATAATGTATTCCTATTTC
1 AATTGAATATAAATTTA-AAATAATATTTTCTTATTTT
*
146765 AATCGAATATAAAT
1 AATTGAATATAAAT
146779 AGGTTAAATA
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
36 20 0.27
37 21 0.28
38 20 0.27
39 2 0.03
40 12 0.16
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (37 bp):
AATTGAATATAAATTTAAAATAATATTTTCTTATTTT
Found at i:154452 original size:49 final size:50
Alignment explanation
Indices: 154393--154559 Score: 163
Period size: 49 Copynumber: 3.5 Consensus size: 50
154383 TGTAAAAAAA
*
154393 TATAAAGTATATATACTATAAAGTATATATAATATATATATA-TATAAAC
1 TATAAGGTATATATACTATAAAGTATATATAATATATATATAGTATAAAC
* * **
154442 TATAAGGTATATATACTTTAAAGTATA-A-AGTATATATATAGTATAATG
1 TATAAGGTATATATACTATAAAGTATATATAATATATATATAGTATAAAC
* * * *
154490 TATAA-G--TATATA-TATAAACTATAAAGT-ATATATATGTAGTATAAAG
1 TATAAGGTATATATACTATAAAGTATATA-TAATATATATATAGTATAAAC
*
154536 TATAAGCATATATATA-TATAAAGT
1 TATAAG-GTATATATACTATAAAGT
154560 TTTAGTATAA
Statistics
Matches: 98, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
44 9 0.09
45 7 0.07
46 21 0.21
47 12 0.12
48 11 0.11
49 25 0.26
50 13 0.13
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (50 bp):
TATAAGGTATATATACTATAAAGTATATATAATATATATATAGTATAAAC
Found at i:154470 original size:7 final size:7
Alignment explanation
Indices: 154460--154632 Score: 59
Period size: 7 Copynumber: 25.3 Consensus size: 7
154450 ATATATACTT
154460 TAAAGTA
1 TAAAGTA
154467 TAAAGTA
1 TAAAGTA
154474 T--A-TA
1 TAAAGTA
*
154478 TATAGTA
1 TAAAGTA
*
154485 TAATGTA
1 TAAAGTA
154492 T-AAGTA
1 TAAAGTA
*
154498 TATA-TA
1 TAAAGTA
*
154504 TAAACTA
1 TAAAGTA
154511 TAAAGTA
1 TAAAGTA
*
154518 TATA-TA
1 TAAAGTA
**
154524 TGTAGTA
1 TAAAGTA
154531 TAAAGTA
1 TAAAGTA
154538 T-AAGCATA
1 TAAAG--TA
154546 TATATA-TA
1 TA-A-AGTA
154554 TAAAGT-
1 TAAAGTA
**
154560 TTTAGTA
1 TAAAGTA
154567 TAAAGTA
1 TAAAGTA
154574 TATAA-TA
1 TA-AAGTA
154581 TAAAGAATA
1 TAAAG--TA
154590 TAAA-TA
1 TAAAGTA
154596 TTAAA-TA
1 -TAAAGTA
154603 T-AAGTA
1 TAAAGTA
*
154609 TATAAGGA
1 TA-AAGTA
154617 TATAA-TA
1 TA-AAGTA
*
154624 TAAAATA
1 TAAAGTA
154631 TA
1 TA
154633 TTAATATTAA
Statistics
Matches: 128, Mismatches: 16, Indels: 44
0.68 0.09 0.23
Matches are distributed among these distances:
4 3 0.02
5 3 0.02
6 34 0.27
7 62 0.48
8 18 0.14
9 6 0.05
10 1 0.01
11 1 0.01
ACGTcount: A:0.53, C:0.01, G:0.10, T:0.36
Consensus pattern (7 bp):
TAAAGTA
Found at i:154575 original size:26 final size:26
Alignment explanation
Indices: 154462--154665 Score: 124
Period size: 27 Copynumber: 7.8 Consensus size: 26
154452 ATATACTTTA
154462 AAGTATAAAGTATATATAT--AGTAT
1 AAGTATAAAGTATATATATAAAGTAT
*
154486 AATGTAT-AAGTATATATATAAACTAT
1 AA-GTATAAAGTATATATATAAAGTAT
* *
154512 AAAGTATATA-TATGTAGTATAAAGTAT
1 -AAGTATAAAGTATATA-TATAAAGTAT
* *
154539 AAGCAT--A-TATATATATAAAGTTT
1 AAGTATAAAGTATATATATAAAGTAT
*
154562 TAGTATAAAGTATATAATATAAAGAATAT
1 AAGTATAAAGTATAT-ATATAAAG--TAT
* *
154591 AAATATTAAA-TATAAGTATATAAGGATAT
1 AAGTA-TAAAGTAT-A-TATATAAAG-TAT
*
154620 AA-TATAAAATATATTAATATTAAA-TAT
1 AAGTATAAAGTATA-T-ATA-TAAAGTAT
*
154647 AAGTATATA-TATATATATA
1 AAGTATAAAGTATATATATA
154666 TATGTATATA
Statistics
Matches: 145, Mismatches: 16, Indels: 38
0.73 0.08 0.19
Matches are distributed among these distances:
23 13 0.09
24 22 0.15
25 8 0.06
26 24 0.17
27 35 0.24
28 13 0.09
29 17 0.12
30 12 0.08
31 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.09, T:0.38
Consensus pattern (26 bp):
AAGTATAAAGTATATATATAAAGTAT
Found at i:154604 original size:22 final size:22
Alignment explanation
Indices: 154577--154648 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
154567 TAAAGTATAT
154577 AATATAAAGAATATAAATATTA
1 AATATAAAGAATATAAATATTA
*
154599 AATAT-AAGTATATAAGGATA-T-
1 AATATAAAGAATATAA--ATATTA
*
154620 AATATAAA-ATATATTAATATTA
1 AATATAAAGA-ATATAAATATTA
154642 AATATAA
1 AATATAA
154649 GTATATATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
20 3 0.07
21 15 0.37
22 20 0.49
23 3 0.07
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (22 bp):
AATATAAAGAATATAAATATTA
Found at i:154663 original size:43 final size:45
Alignment explanation
Indices: 154420--154668 Score: 152
Period size: 43 Copynumber: 5.6 Consensus size: 45
154410 ATAAAGTATA
** *
154420 TATAA-TATATATA-TATATAAACTATAAGGTATATATACT-TTAAAG
1 TATAAGTATATATAGTATAT-AA-TATAAAATATAT-TAATATTAAAG
* * *
154465 TATAAAGTATATATA-TAGTATAATGTATAAGTATA-T-ATA-TAAAC
1 TAT-AAGTATATATAGTA-TATAATATA-AAATATATTAATATTAAAG
*
154509 TATAAAGTATATATATGTAGTATAAAGTATAAGCATATA-T-ATATATAAAG
1 TAT-AAGTATATATA-GTA-TAT-AA-TATAA-AATATATTAATAT-TAAAG
* * *
154559 TTTTAGTATA-A-AGTATATAATATAAAGA-ATATAAATATTAAA-
1 TATAAGTATATATAGTATATAATATAAA-ATATATTAATATTAAAG
*
154601 TATAAGTATATA-AGGATATAATATAAAATATATTAATATTAAA-
1 TATAAGTATATATAGTATATAATATAAAATATATTAATATTAAAG
154644 TATAAGTATATATA-TATATATATAT
1 TATAAGTATATATAGTATATA-ATAT
154669 GTATATAAAG
Statistics
Matches: 168, Mismatches: 17, Indels: 39
0.75 0.08 0.17
Matches are distributed among these distances:
42 12 0.07
43 55 0.33
44 31 0.18
45 7 0.04
46 14 0.08
47 22 0.13
48 15 0.09
49 6 0.04
50 6 0.04
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (45 bp):
TATAAGTATATATAGTATATAATATAAAATATATTAATATTAAAG
Found at i:155959 original size:20 final size:20
Alignment explanation
Indices: 155936--156289 Score: 190
Period size: 20 Copynumber: 17.4 Consensus size: 20
155926 CAGTTTCCAG
* *
155936 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCTGTA
* *
155956 AATCGCAATGCGAA-CATATA
1 AATCGCAACGCGAATC-TGTA
*
155976 AATCGCAACGCGATTCT-TA
1 AATCGCAACGCGAATCTGTA
* * *
155995 CTATCGCAACGAGTAT-TCGTAAA
1 -AATCGCAACGCGAATCT-GT--A
* * *
156018 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCTGTA
156038 AATCGCAACGAC-AATAC-GTAA
1 AATCGCAACG-CGAAT-CTGT-A
* * *
156059 AATCACAACGCGTATCCGTA
1 AATCGCAACGCGAATCTGTA
* *
156079 AATCGCAACGAGTATAC-GTAA
1 AATCGCAACGCGAAT-CTGT-A
* * * *
156100 AATCGTAACACGTATCCGTA
1 AATCGCAACGCGAATCTGTA
*
156120 AATCGCAACGAGAATAC-GTAA
1 AATCGCAACGCGAAT-CTGT-A
*
156141 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCTGTA
* *
156160 TTATCGCAAC-CAGAATAC-GTT
1 -AATCGCAACGC-GAAT-CTGTA
*
156181 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCTGTA
**
156201 AATCGCAACGATAAT-TCGTA
1 AATCGCAACGCGAATCT-GTA
** *
156221 AATCGCAACGATAATCCGTA
1 AATCGCAACGCGAATCTGTA
* *
156241 AATTGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCTGTA
*
156261 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCTGTA
156281 AATCGCAAC
1 AATCGCAAC
156290 ACTTAAATTT
Statistics
Matches: 266, Mismatches: 41, Indels: 54
0.74 0.11 0.15
Matches are distributed among these distances:
19 7 0.03
20 193 0.73
21 51 0.19
22 14 0.05
23 1 0.00
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (20 bp):
AATCGCAACGCGAATCTGTA
Found at i:156073 original size:41 final size:41
Alignment explanation
Indices: 155975--156289 Score: 295
Period size: 41 Copynumber: 7.7 Consensus size: 41
155965 GCGAACATAT
* * * * *
155975 AAATCGCAACGCG-ATTCTTACTATCGCAACGAGTATTCGTAA
1 AAATCGCAACGCGTATCCGTA-AATCGCAACGAGAATACGT-A
* *
156017 AAATCGCAATGCGTATCCGTAAATCGCAACGACAATACGTA
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* *
156058 AAATCACAACGCGTATCCGTAAATCGCAACGAGTATACGTA
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* *
156099 AAATCGTAACACGTATCCGTAAATCGCAACGAGAATACGTA
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* * *
156140 AAATCGCAACGCG-ATTC-TGATTATCGCAACCAGAATACGT-
1 AAATCGCAACGCGTATCCGT-A-AATCGCAACGAGAATACGTA
* * * * * *
156180 TAATCGCAACGAGAATCTGTAAATCGCAACGATAATTCGT-
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* *
156220 AAATCGCAACG-ATAATCCGTAAATTGCAACGAGAAT-CTGT-
1 AAATCGCAACGCGT-ATCCGTAAATCGCAACGAGAATAC-GTA
* * *
156260 AAATCGCAACGAGAATCTGTAAATCGCAAC
1 AAATCGCAACGCGTATCCGTAAATCGCAAC
156290 ACTTAAATTT
Statistics
Matches: 227, Mismatches: 38, Indels: 18
0.80 0.13 0.06
Matches are distributed among these distances:
39 2 0.01
40 86 0.38
41 106 0.47
42 28 0.12
43 5 0.02
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (41 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
Found at i:156972 original size:12 final size:12
Alignment explanation
Indices: 156951--156984 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
156941 ACCACATTTC
*
156951 CAATACCAAACA
1 CAATATCAAACA
156963 CAATATCAAACA
1 CAATATCAAACA
*
156975 CAATCTCAAA
1 CAATATCAAA
156985 ACCTACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:157163 original size:24 final size:24
Alignment explanation
Indices: 157105--157151 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
157095 AGTCAGTATT
* *
157105 CGAAATTTGATCTTGGTCAATACC
1 CGAACTTTGATATTGGTCAATACC
157129 CGAACTTTGATATTGGTCAATAC
1 CGAACTTTGATATTGGTCAATAC
157152 TCGGATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (24 bp):
CGAACTTTGATATTGGTCAATACC
Found at i:159690 original size:33 final size:33
Alignment explanation
Indices: 159634--159878 Score: 319
Period size: 33 Copynumber: 7.2 Consensus size: 33
159624 TCATTTGACT
* * * *
159634 ATCGCAACGCGGAAATTACAATCGCAACAAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
* *
159668 ATCGCAATGCGAAATGAAAATCGCAACGTGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * * *
159701 ATCGCAACGTGAATATGAATATCGCAACGCGGAAATGA
1 ATCGCAATGCGAA-ATGAAAATCGCAA--C-GAGA-GA
159739 CTATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 --ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
159774 ATCGCAATACGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
159807 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
159840 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
159873 ATCGCA
1 ATCGCA
159879 CTCGTTGCGA
Statistics
Matches: 186, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
33 132 0.71
34 21 0.11
35 2 0.01
36 4 0.02
37 3 0.02
38 1 0.01
39 12 0.06
40 11 0.06
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:159701 original size:14 final size:14
Alignment explanation
Indices: 159682--159713 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
159672 CAATGCGAAA
159682 TGAAAATCGCAACG
1 TGAAAATCGCAACG
159696 TGAAAATCGCAACG
1 TGAAAATCGCAACG
159710 TGAA
1 TGAA
159714 TATGAATATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.16
Consensus pattern (14 bp):
TGAAAATCGCAACG
Found at i:159719 original size:20 final size:19
Alignment explanation
Indices: 159667--159867 Score: 127
Period size: 19 Copynumber: 11.5 Consensus size: 19
159657 GCAACAAGAG
*
159667 AATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
159686 AATCGCAA--CG---TGAA
1 AATCGCAACGCGAAATGAA
*
159700 AATCGCAACGTGAATATGAA
1 AATCGCAACGCGAA-ATGAA
* *
159720 TATCGCAACGCGGAAATGAC
1 AATCGCAACGC-GAAATGAA
* *
159740 TATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
159759 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
**
159773 AATCGCAATACGAAATGAA
1 AATCGCAACGCGAAATGAA
*
159792 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
*
159806 AATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
159825 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
*
159839 AATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
159858 AATCGCAACG
1 AATCGCAACG
159868 AGAGAATCGC
Statistics
Matches: 146, Mismatches: 14, Indels: 44
0.72 0.07 0.22
Matches are distributed among these distances:
14 42 0.29
15 3 0.02
16 7 0.05
17 8 0.05
18 3 0.02
19 53 0.36
20 27 0.18
21 3 0.02
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:159778 original size:14 final size:14
Alignment explanation
Indices: 159759--159878 Score: 78
Period size: 14 Copynumber: 7.5 Consensus size: 14
159749 GCGAAATGAA
159759 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
159773 AATCGCAATACGAAATGAA
1 AATCGC-A-ACG--A-GAG
159792 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
159806 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
159825 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
159839 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
159858 AATCGCAACGAGAG
1 AATCGCAACGAGAG
159872 AATCGCA
1 AATCGCA
159879 CTCGTTGCGA
Statistics
Matches: 85, Mismatches: 6, Indels: 30
0.70 0.05 0.25
Matches are distributed among these distances:
14 35 0.41
15 4 0.05
16 7 0.08
17 7 0.08
18 4 0.05
19 28 0.33
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:160034 original size:14 final size:14
Alignment explanation
Indices: 160015--160051 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
160005 CATCAATTAA
160015 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
160029 ACAAATCATCTTTT
1 ACAAATCAACTTTT
160043 ACAAATCAA
1 ACAAATCAA
160052 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:160192 original size:82 final size:84
Alignment explanation
Indices: 160018--160194 Score: 315
Period size: 82 Copynumber: 2.1 Consensus size: 84
160008 CAATTAAACA
*
160018 AATCAACTTTTACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAAGCAATAATTCTT
1 AATCAACTTTTACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAAGCAATAATTCAT
160083 ATTTCCTCATCTACTATTG
66 ATTTCCTCATCTACTATTG
160102 AATCAACTTTTACAAATCATCTTTTAC-AA-CGAATTAAACAATCAAAAAATAAGCAATAATT-A
1 AATCAACTTTTACAAATCATCTTTTACAAATC-AATTAAACAATCAAAAAATAAGCAATAATTCA
160164 TATTTCCTCATCTACTATTG
65 TATTTCCTCATCTACTATTG
160184 AATCAACTTTT
1 AATCAACTTTT
160195 GCAGCCATAC
Statistics
Matches: 91, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
82 32 0.35
83 32 0.35
84 27 0.30
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.36
Consensus pattern (84 bp):
AATCAACTTTTACAAATCATCTTTTACAAATCAATTAAACAATCAAAAAATAAGCAATAATTCAT
ATTTCCTCATCTACTATTG
Found at i:161549 original size:21 final size:21
Alignment explanation
Indices: 161525--161594 Score: 52
Period size: 21 Copynumber: 3.3 Consensus size: 21
161515 TGACAGTGGC
161525 CTCTTGAACGATGGGAGGGGA
1 CTCTTGAACGATGGGAGGGGA
* * ** *
161546 CTCTCG-AGGAATGATAGGGGC
1 CTCTTGAACG-ATGGGAGGGGA
* * *
161567 CTCTTCAACGATAGGAGTGGA
1 CTCTTGAACGATGGGAGGGGA
161588 CTCTTGA
1 CTCTTGA
161595 GGGATGACAG
Statistics
Matches: 33, Mismatches: 14, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (21 bp):
CTCTTGAACGATGGGAGGGGA
Found at i:161568 original size:42 final size:42
Alignment explanation
Indices: 161522--161601 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
161512 TGATGACAGT
* *
161522 GGCCTCTTGAACGATGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * *
161564 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
161602 CAGGCGAGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.24, C:0.17, G:0.38, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:162125 original size:19 final size:19
Alignment explanation
Indices: 162101--162144 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
162091 AAATCGCAAC
162101 GCGATTATAGTTTCACGTT
1 GCGATTATAGTTTCACGTT
* * *
162120 GCGATTTTGGTTTCGCGTT
1 GCGATTATAGTTTCACGTT
162139 GCGATT
1 GCGATT
162145 TTCATTTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.14, C:0.16, G:0.27, T:0.43
Consensus pattern (19 bp):
GCGATTATAGTTTCACGTT
Done.