Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006701.1 Hibiscus syriacus cultivar Beakdansim tig00016683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71628

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--183
68
2.0
68
86
2
191
28
15
23
32
1.95
672--720
18
2.6
20
78
12
59
46
0
2
51
1.12
661--722
30
2.0
30
87
3
88
43
0
4
51
1.23
5787--5822
18
1.9
18
88
5
54
0
11
11
77
0.99
5787--5867
20
4.0
20
80
7
74
0
7
11
81
0.87
5806--5839
13
2.5
13
95
4
59
0
11
8
79
0.94
5798--5867
21
3.4
21
82
4
88
0
5
10
84
0.78
7303--7343
2
20.5
2
100
0
82
51
0
0
48
1.00
7513--7558
20
2.3
20
85
3
67
56
4
0
39
1.19
11566--11645
23
3.4
23
82
3
88
55
13
18
12
1.70
12924--13061
58
2.4
59
81
7
165
35
13
20
31
1.90
13063--13110
25
1.9
25
95
0
87
22
4
22
50
1.67
13461--13506
21
2.2
21
92
0
74
34
19
2
43
1.63
18191--18249
24
2.5
24
94
0
100
47
10
11
30
1.73
22397--22506
55
2.0
55
94
3
195
32
34
16
16
1.91
22889--22922
13
2.6
13
86
13
52
61
0
0
38
0.96
31040--31118
21
3.8
21
74
0
77
29
32
11
26
1.91
31519--31638
43
2.8
44
94
2
215
20
3
6
69
1.26
31638--31686
13
3.6
13
78
8
53
28
4
10
57
1.50
31736--31768
16
2.1
16
94
0
57
30
21
12
36
1.90
42465--42524
25
2.4
25
85
0
84
38
13
8
40
1.75
42748--42795
16
3.2
14
78
16
51
33
0
4
62
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43138--43166
2
14.5
2
100
0
58
48
0
51
0
1.00
54034--54098
3
22.0
3
81
9
80
29
3
1
66
1.16
54217--54338
25
4.9
25
90
4
192
36
18
15
28
1.92
55971--56001
14
2.2
14
94
0
53
9
0
6
83
0.79
68648--68904
90
2.9
90
88
6
366
26
31
17
24
1.97
68606--68910
90
3.4
90
85
8
365
26
30
18
24
1.98
69277--69397
49
2.4
49
87
4
172
36
19
15
28
1.92
69277--69397
24
4.9
25
87
5
174
36
19
15
28
1.92

Tables:   1

The End!