genome.fa.s6702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006702.1 Hibiscus syriacus cultivar Beakdansim tig00016692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97137

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3302--3326	3	8.3	3	100	0	50	68	0	0	32	0.90
10242--10655	37	11.2	37	72	18	265	22	18	22	36	1.95
10285--10685	143	2.7	145	89	4	583	22	18	23	35	1.96
10864--10905	21	2.0	21	85	0	57	26	28	14	30	1.95
10661--11098	214	2.0	214	89	3	675	35	15	15	33	1.89
10927--11208	151	1.9	151	86	3	406	35	15	13	35	1.86
11907--12075	37	4.6	37	81	4	198	40	20	18	20	1.91
11909--12075	73	2.3	75	82	5	198	41	19	18	20	1.91
12132--12282	42	3.5	41	74	11	149	29	25	15	29	1.96
12109--12434	91	3.7	89	79	5	331	30	24	15	29	1.96
14642--14898	37	6.8	37	75	14	220	22	17	23	36	1.94
14901--14975	22	3.5	21	67	20	57	32	20	24	24	1.98
14904--14995	42	2.2	42	88	0	139	31	18	23	26	1.97
15105--15145	21	2.0	21	85	0	55	26	29	17	26	1.97
17525--17565	12	3.3	12	89	3	55	4	14	0	80	0.87
17533--17571	17	2.4	16	86	4	51	5	12	0	82	0.83
17530--17590	17	3.4	17	77	8	50	4	16	0	78	0.91
17522--17591	13	5.4	13	75	11	63	4	15	0	80	0.87
17519--17590	29	2.4	30	82	15	87	4	16	0	79	0.89
19448--19507	28	2.1	28	96	0	111	26	25	3	45	1.69
28928--28953	2	13.0	2	100	0	52	50	0	0	50	1.00
30919--31067	73	2.0	73	97	0	280	26	8	16	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31564--31605	19	2.2	19	86	0	57	52	7	2	38	1.42
36413--36439	6	4.5	6	100	0	54	66	0	0	33	0.92
38585--38674	10	9.3	9	75	11	72	14	26	28	30	1.95
38671--38717	5	9.8	5	77	9	53	23	53	19	4	1.63
38671--38717	19	2.5	19	96	0	85	23	53	19	4	1.63
38690--38716	14	1.9	14	100	0	54	22	51	22	3	1.63
45174--45213	9	4.3	9	84	6	53	15	30	30	25	1.95
45210--45242	5	6.8	5	86	6	50	21	54	21	3	1.58
45201--45243	19	2.3	19	87	0	68	18	48	25	6	1.73
45215--45241	14	1.9	14	100	0	54	22	51	22	3	1.63
47653--47761	53	2.1	53	91	0	173	41	3	32	22	1.72
49286--49314	14	2.0	15	93	6	51	62	27	3	6	1.37
51234--51313	22	3.6	22	77	11	92	25	23	26	25	2.00
51235--51312	23	3.5	23	76	13	83	25	23	25	25	2.00
51279--51332	20	2.6	21	82	11	67	29	18	22	29	1.97
56486--56616	45	2.9	45	84	8	144	26	25	19	29	1.98
56585--56633	19	2.6	19	84	9	57	24	28	20	26	1.99
57391--57431	18	2.3	18	95	0	73	19	9	31	39	1.84
57398--57440	18	2.4	18	88	7	61	16	6	34	41	1.75
57452--57530	6	13.2	6	76	5	61	5	5	41	48	1.47
57451--57530	24	3.3	25	77	6	85	6	5	41	47	1.50
57433--57503	18	3.9	18	72	7	54	11	5	38	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57452--57530	12	6.6	12	76	9	72	5	5	41	48	1.47
58121--58250	61	2.1	61	94	0	224	33	10	9	46	1.71
58282--58368	33	2.6	33	98	0	165	44	5	6	42	1.55
58532--58566	15	2.4	15	95	4	63	48	0	5	45	1.26
58535--58633	27	3.7	27	83	0	108	47	5	7	40	1.53
58703--58760	11	5.5	11	72	15	50	39	3	8	48	1.51
58784--58869	20	4.1	20	69	21	61	39	6	8	45	1.61
59013--59131	20	6.0	19	73	20	84	47	2	2	47	1.29
59010--59066	17	3.3	16	76	21	53	49	1	0	49	1.11
58959--59151	11	17.6	11	66	17	71	48	3	3	45	1.34
59013--59126	9	11.5	10	69	20	62	47	2	2	47	1.30
59073--59151	22	3.7	22	81	11	92	48	3	1	46	1.28
62362--62400	16	2.4	16	86	0	51	76	0	2	20	0.90
62368--62438	3	23.3	3	77	8	72	66	0	2	30	1.06
63311--63471	64	2.5	63	85	7	191	34	18	21	26	1.96
64446--64553	31	3.5	31	79	3	103	24	18	22	35	1.96
64499--64594	30	3.2	30	83	2	104	17	19	28	34	1.95
67920--68080	64	2.5	63	82	7	173	35	18	19	26	1.95
69051--69145	31	3.1	31	81	3	120	26	17	20	35	1.95
69073--69165	31	3.0	31	81	4	73	24	18	22	34	1.96
70719--70756	2	19.0	2	100	0	76	50	0	0	50	1.00
75366--75407	16	2.6	16	100	0	84	40	0	19	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76070--76106	18	2.1	18	89	0	56	18	21	35	24	1.96
76147--76283	29	4.7	27	78	13	123	35	3	16	45	1.65
76141--76298	59	2.7	58	84	7	196	35	3	16	44	1.64
83569--83709	29	4.9	29	85	2	176	36	4	17	41	1.71
83570--83738	59	2.9	57	83	5	194	37	5	16	40	1.71
83696--83765	29	2.4	29	85	0	95	38	4	12	44	1.63
87004--87046	17	2.6	17	88	3	61	62	2	11	23	1.40
87554--87591	17	2.2	17	86	9	51	76	2	2	18	1.02
87552--87608	29	2.0	28	86	10	80	71	3	5	19	1.19

Tables:   1

The End!