Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006705.1 Hibiscus syriacus cultivar Beakdansim tig00016701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 196558
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:128037 original size:34 final size:34
Alignment explanation
Indices: 127992--128078 Score: 104
Period size: 34 Copynumber: 2.5 Consensus size: 34
127982 ACTTAAACCC
*
127992 TAAATCCTAAACCCTAAACCTGAACATC-TAACATA
1 TAAAT-CTAAACCCTAAACCTGAA-ATCATAACACA
* *
128027 TAAATCTAAACCCTAAACCTTAAATCATATCACA
1 TAAATCTAAACCCTAAACCTGAAATCATAACACA
*
128061 TAAACTCTAAACCTTAAA
1 TAAA-TCTAAACCCTAAA
128079 TCATATCACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
33 3 0.07
34 26 0.57
35 17 0.37
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.25
Consensus pattern (34 bp):
TAAATCTAAACCCTAAACCTGAAATCATAACACA
Found at i:128083 original size:21 final size:22
Alignment explanation
Indices: 128059--128138 Score: 85
Period size: 21 Copynumber: 3.7 Consensus size: 22
128049 AATCATATCA
* *
128059 CATAAACTCTAAACCT-TAAAT
1 CATAAACCCTAAACCTCTAAAC
* * *
128080 CAT-ATCACATAAAACTCTAAAC
1 CATAAAC-CCTAAACCTCTAAAC
128102 CATAAACCCTAAA-CTCTAAAC
1 CATAAACCCTAAACCTCTAAAC
128123 CATAAACCCTAAACCT
1 CATAAACCCTAAACCT
128139 TATCACATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
20 2 0.04
21 30 0.62
22 14 0.29
23 2 0.04
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (22 bp):
CATAAACCCTAAACCTCTAAAC
Found at i:128107 original size:29 final size:28
Alignment explanation
Indices: 128033--128107 Score: 123
Period size: 28 Copynumber: 2.6 Consensus size: 28
128023 CATATAAATC
*
128033 TAAACCCTAAACCTTAAATCATATCACA
1 TAAACTCTAAACCTTAAATCATATCACA
128061 TAAACTCTAAACCTTAAATCATATCACA
1 TAAACTCTAAACCTTAAATCATATCACA
*
128089 TAAAACTCTAAACCATAAA
1 T-AAACTCTAAACCTTAAA
128108 CCCTAAACTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 28 0.64
29 16 0.36
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAACTCTAAACCTTAAATCATATCACA
Found at i:128108 original size:14 final size:14
Alignment explanation
Indices: 128097--128137 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
128087 CATAAAACTC
* *
128097 TAAACCATAAACCC
1 TAAACCCTAAACCA
*
128111 TAAACTCTAAACCA
1 TAAACCCTAAACCA
128125 TAAACCCTAAACC
1 TAAACCCTAAACC
128138 TTATCACATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:128148 original size:21 final size:21
Alignment explanation
Indices: 128091--128136 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
128081 ATATCACATA
128091 AAACTCTAAACCATAAACCCT
1 AAACTCTAAACCATAAACCCT
128112 AAACTCTAAACCATAAACCCT
1 AAACTCTAAACCATAAACCCT
128133 AAAC
1 AAAC
128137 CTTATCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (21 bp):
AAACTCTAAACCATAAACCCT
Found at i:128871 original size:14 final size:14
Alignment explanation
Indices: 128854--128894 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
128844 TTTATTCAGC
128854 AATAATGTATTTTT
1 AATAATGTATTTTT
128868 AAT-A--TATTTTT
1 AATAATGTATTTTT
*
128879 AATAATGTAATTTT
1 AATAATGTATTTTT
128893 AA
1 AA
128895 AAAATCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 1 0.04
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (14 bp):
AATAATGTATTTTT
Found at i:131130 original size:29 final size:28
Alignment explanation
Indices: 131067--131259 Score: 122
Period size: 29 Copynumber: 6.6 Consensus size: 28
131057 TCTAAATTCG
* *
131067 AAAATTACCAAAATGTCAC-CTTTTCAAA
1 AAAATT-CCAGAATGTCACATTTTTCAAA
*
131095 AATAATTCACAGAATGTCACATTTTTCATA
1 AA-AATTC-CAGAATGTCACATTTTTCAAA
* * *
131125 AAAATTCCTGAAATAT-A-TTTTTTCAAAA
1 AAAATTCCAG-AATGTCACATTTTTC-AAA
* * *
131153 AAAAATCCATAATGTCACATTTTTTTCACA
1 AAAATTCCAGAATGTCACA--TTTTTCAAA
* **
131183 AAAATTCCCGAAATGTCATTTTTTTCAAA
1 AAAATTCCAG-AATGTCACATTTTTCAAA
* * *
131212 ATAATTCCCAGAATGTCACCTTTTTCACA
1 AAAATT-CCAGAATGTCACATTTTTCAAA
* *
131241 ATAATTCCCAAAATGTCAC
1 AAAATT-CCAGAATGTCAC
131260 TGGGTCGGGT
Statistics
Matches: 129, Mismatches: 25, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
27 10 0.08
28 16 0.12
29 69 0.53
30 21 0.16
31 13 0.10
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (28 bp):
AAAATTCCAGAATGTCACATTTTTCAAA
Found at i:131255 original size:58 final size:58
Alignment explanation
Indices: 131067--131258 Score: 210
Period size: 58 Copynumber: 3.3 Consensus size: 58
131057 TCTAAATTCG
* ** * *
131067 AAAATTACCAAAATGTCACCTTTTCAAAAATAATTCACAGAATGTCACATTTTTCATA
1 AAAATTCCCAAAATGTCATTTTTTCAAAAATAATTCCCAGAATGTCACATTTTTCACA
** * * * *
131125 AAAATTCCTGAAATAT-ATTTTTTCAAAAAAAAAT-CCATAATGTCACATTTTTTTCACA
1 AAAATTCCCAAAATGTCATTTTTTCAAAAATAATTCCCAGAATGTCACA--TTTTTCACA
* *
131183 AAAATTCCCGAAATGTCATTTTTTTC-AAAATAATTCCCAGAATGTCACCTTTTTCACA
1 AAAATTCCCAAAATGTCA-TTTTTTCAAAAATAATTCCCAGAATGTCACATTTTTCACA
*
131241 ATAATTCCCAAAATGTCA
1 AAAATTCCCAAAATGTCA
131259 CTGGGTCGGG
Statistics
Matches: 110, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
56 11 0.10
57 14 0.13
58 59 0.54
59 8 0.07
60 18 0.16
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (58 bp):
AAAATTCCCAAAATGTCATTTTTTCAAAAATAATTCCCAGAATGTCACATTTTTCACA
Found at i:136224 original size:21 final size:21
Alignment explanation
Indices: 136198--136238 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
136188 ATGGGTAAGG
*
136198 GGAATCGGTACC-CATTCAAGA
1 GGAATCGATACCTC-TTCAAGA
136219 GGAATCGATACCTCTTCAAG
1 GGAATCGATACCTCTTCAAG
136239 CGAACAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (21 bp):
GGAATCGATACCTCTTCAAGA
Found at i:137744 original size:103 final size:103
Alignment explanation
Indices: 137416--137732 Score: 580
Period size: 103 Copynumber: 3.1 Consensus size: 103
137406 GTCGAGGGTT
* *
137416 TATGTGGTCCTTTGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
137481 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
137519 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
137584 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
137622 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
137687 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
137725 TATATGGT
1 TATGTGGT
137733 ACTTATGGAC
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 208 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:137785 original size:23 final size:23
Alignment explanation
Indices: 137755--137812 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
137745 TATTATATGT
*
137755 CACTACGGTGCAATTCTACGCGG
1 CACTACGGTGCAATTCTACGAGG
*
137778 CACTACGGTGCAATTCTATGAGG
1 CACTACGGTGCAATTCTACGAGG
*
137801 CACTTCGGTGCA
1 CACTACGGTGCA
137813 TTTATATGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (23 bp):
CACTACGGTGCAATTCTACGAGG
Found at i:137820 original size:23 final size:23
Alignment explanation
Indices: 137755--137822 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
137745 TATTATATGT
* * *
137755 CACTACGGTGCAATTCTACGCGG
1 CACTACGGTGCAATTATATGAGG
*
137778 CACTACGGTGCAATTCTATGAGG
1 CACTACGGTGCAATTATATGAGG
* *
137801 CACTTCGGTGCATTTATATGAG
1 CACTACGGTGCAATTATATGAG
137823 CTGTGGTGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (23 bp):
CACTACGGTGCAATTATATGAGG
Found at i:141428 original size:29 final size:28
Alignment explanation
Indices: 141396--141509 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 28
141386 AAAATATCAT
141396 ATTTTTCAAAATAATTTCCAGAATGTCAC
1 ATTTTTCAAAATAA-TTCCAGAATGTCAC
*
141425 ATTTTTCACAAA-AATTCCTGAAATGT--C
1 ATTTTTCA-AAATAATTCCAG-AATGTCAC
*
141452 ATTTTTCAAAATAATTCCCAGAATATCAC
1 ATTTTTCAAAATAATT-CCAGAATGTCAC
* * *
141481 CTTTTTCACAATAATTCTCAAAATGTCAC
1 ATTTTTCAAAATAATTC-CAGAATGTCAC
141510 CGGGTCGGGA
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
26 3 0.04
27 17 0.24
28 9 0.13
29 39 0.55
30 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (28 bp):
ATTTTTCAAAATAATTCCAGAATGTCAC
Found at i:141505 original size:56 final size:56
Alignment explanation
Indices: 141396--141508 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
141386 AAAATATCAT
* * *
141396 ATTTTTCAAAATAATTTCCAGAATGTCACATTTTTCACAAAAATTCCTGAAATGTC
1 ATTTTTCAAAATAATTCCCAGAATATCACATTTTTCACAAAAATTCCTAAAATGTC
* *
141452 ATTTTTCAAAATAATTCCCAGAATATCACCTTTTTCACAATAATT-CTCAAAATGTC
1 ATTTTTCAAAATAATTCCCAGAATATCACATTTTTCACAAAAATTCCT-AAAATGTC
141508 A
1 A
141509 CCGGGTCGGG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 2 0.04
56 49 0.96
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37
Consensus pattern (56 bp):
ATTTTTCAAAATAATTCCCAGAATATCACATTTTTCACAAAAATTCCTAAAATGTC
Found at i:141566 original size:19 final size:19
Alignment explanation
Indices: 141544--141591 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
141534 GGTCGGGTCA
141544 GACCGGTCAACCCGATTCG
1 GACCGGTCAACCCGATTCG
* *
141563 GACCGGTCAACCCGGTTTG
1 GACCGGTCAACCCGATTCG
141582 GACCGGTCAA
1 GACCGGTCAA
141592 GCTGGTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.17
Consensus pattern (19 bp):
GACCGGTCAACCCGATTCG
Found at i:142545 original size:20 final size:20
Alignment explanation
Indices: 142503--142541 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
142493 TTACCCTATA
*
142503 ATAAATTGAATATGTGATAT
1 ATAAATTGAATATATGATAT
*
142523 ATAAATTGATTA-ATGATAT
1 ATAAATTGAATATATGATAT
142542 TATATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (20 bp):
ATAAATTGAATATATGATAT
Found at i:150579 original size:3 final size:3
Alignment explanation
Indices: 150571--150604 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
150561 TTACATTTCA
150571 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
150605 TTGTACTCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:152200 original size:20 final size:19
Alignment explanation
Indices: 152175--152228 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
152165 GCGAAATAAA
152175 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
152195 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
152215 AATCGCAACGCGAT
1 AATCGCAACGCGAT
152229 TATGAAGAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:152239 original size:21 final size:20
Alignment explanation
Indices: 152215--152347 Score: 83
Period size: 20 Copynumber: 6.5 Consensus size: 20
152205 CAGTTCCCAG
152215 AATCGCAACGCGATTATGAA
1 AATCGCAACGCGATTATGAA
*
152235 GAATCGCAATGCGA-TA-GTACA
1 -AATCGCAACGCGATTATG-A-A
** * * *
152256 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTAT-GAA
*
152278 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTATGAA
**
152298 AATCGCAACGCGAACAT-ATA
1 AATCGCAACGCGATTATGA-A
* *
152318 AATCGCAACGCGATTCTGAC
1 AATCGCAACGCGATTATGAA
*
152338 TATCGCAACG
1 AATCGCAACG
152348 AGTATCCGTA
Statistics
Matches: 87, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
19 2 0.02
20 46 0.53
21 35 0.40
22 3 0.03
23 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (20 bp):
AATCGCAACGCGATTATGAA
Found at i:152303 original size:20 final size:20
Alignment explanation
Indices: 152278--152533 Score: 176
Period size: 20 Copynumber: 12.7 Consensus size: 20
152268 GATTTTCCAG
**
152278 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGAA
**
152298 AATCGCAACGCGAA-CATATA
1 AATCGCAACGCGAATCCGA-A
* * *
152318 AATCGCAACGCGATTCTGAC
1 AATCGCAACGCGAATCCGAA
* * *
152338 TATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATCCG-AA
* * *
152359 AATCGCAACACGTATCCGTA
1 AATCGCAACGCGAATCCGAA
* *
152379 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
*
152399 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCG-AA
* * *
152420 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGAA
* * *
152440 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGAA
* * *
152460 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGAA
* * *
152480 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
*
152500 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCG-AA
152521 AATCGCAACGCGA
1 AATCGCAACGCGA
152534 TTTTTAAAGC
Statistics
Matches: 190, Mismatches: 37, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
19 1 0.01
20 143 0.75
21 46 0.24
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGAA
Found at i:152361 original size:61 final size:61
Alignment explanation
Indices: 152278--152509 Score: 285
Period size: 61 Copynumber: 3.8 Consensus size: 61
152268 GATTTTCCAG
* * * *
152278 AATCGCAACGCGAATATG-AAAATCGCAACGCG-AACATATAAATCGCAACGCG-ATTCTG-A
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATC-TGTAAATCGCAACGCGTA-TCTGTA
* * * * * *
152337 CTATCGCAACGAGTATCCGTAAAATCGCAACACGTATCCGTAAATCGCAACGCGTATCCGTA
1 -AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGCGTATCTGTA
*
152399 AATCGCAACGACAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGCGTATCTGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGCGTATCTGTA
* *
152460 AATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAAATCGCAACG
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACG
152510 ACAATACGTA
Statistics
Matches: 148, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
60 42 0.28
61 102 0.69
62 4 0.03
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (61 bp):
AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGCGTATCTGTA
Found at i:152408 original size:101 final size:101
Alignment explanation
Indices: 152278--152535 Score: 328
Period size: 101 Copynumber: 2.6 Consensus size: 101
152268 GATTTTCCAG
* ** * * * *
152278 AATCGCAACGCGAATATGAAAATCGCAACG-CGA-ACATATAAATCGCAACGCGATTCTG-ACTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTA-AAATCGCAACGCGATTCTGTA-AA
* *
152340 TCGCAACGAGTATCCGTAAAATCGCAAC-ACGTATCCGTA
64 TCGCAACGAGTATCCGT-AAATCGCAACGA-GAATACGTA
152379 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCG-TATCTGTAAAT
1 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGAT-TCTGTAAAT
* *
152443 CGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
65 CGCAACGAGTATCCGTAAATCGCAACGAGAATACGTA
*
152480 AATCGCAATGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGATT
1 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGATT
152536 TTTAAAGCAC
Statistics
Matches: 139, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
101 97 0.70
102 37 0.27
103 5 0.04
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (101 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGATTCTGTAAATC
GCAACGAGTATCCGTAAATCGCAACGAGAATACGTA
Found at i:152418 original size:26 final size:21
Alignment explanation
Indices: 152339--152530 Score: 213
Period size: 20 Copynumber: 9.4 Consensus size: 21
152329 GATTCTGACT
152339 ATCGCAACGA-GTATCCGTAAA
1 ATCGCAACGACGTATCCGT-AA
152360 ATCGCAAC-ACGTATCCGTAA
1 ATCGCAACGACGTATCCGTAA
152380 ATCGCAACG-CGTATCCGTAA
1 ATCGCAACGACGTATCCGTAA
* *
152400 ATCGCAACGAC-AATACGTAAA
1 ATCGCAACGACGTATCCGT-AA
*
152421 ATCGCAACG-CGTATCTGTAA
1 ATCGCAACGACGTATCCGTAA
*
152441 ATCGCAACG-CGTATCTGTAA
1 ATCGCAACGACGTATCCGTAA
* *
152461 ATCGCAACGA-GAATACGTAA
1 ATCGCAACGACGTATCCGTAA
*
152481 ATCGCAATG-CGTATCCGTAA
1 ATCGCAACGACGTATCCGTAA
* *
152501 ATCGCAACGAC-AATACGTAAA
1 ATCGCAACGACGTATCCGT-AA
152522 ATCGCAACG
1 ATCGCAACG
152531 CGATTTTTAA
Statistics
Matches: 148, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
20 104 0.70
21 44 0.30
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.19
Consensus pattern (21 bp):
ATCGCAACGACGTATCCGTAA
Found at i:152500 original size:81 final size:81
Alignment explanation
Indices: 152278--152532 Score: 264
Period size: 81 Copynumber: 3.1 Consensus size: 81
152268 GATTTTCCAG
* * * * ** * **
152278 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATAAATCGCAACGCGATTC-TGACTATC
1 AATCGCAACGCGTATCTGTAAATCGCAACGCGAATACGTAAATCGCAACGCGATACGT-AAAATC
152342 GCAACGAGTATCCGTAA
65 GCAACGAGTATCCGTAA
* * * * *
152359 AATCGCAACACGTATCCGTAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATC
1 AATCGCAACGCGTATCTGTAAATCGCAACGCGAATACGTAAATCGCAACG-CGATACGTAAAATC
* *
152424 GCAACGCGTATCTGT-A
65 GCAACGAGTATCCGTAA
* * *
152440 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGT-AAATC
1 AATCGCAACGCGTATCTGTAAATCGCAACGCGAATACGTAAATCGCAACGCG-ATACGTAAAATC
** *
152504 GCAACGACAATACGTAA
65 GCAACGAGTATCCGTAA
152521 AATCGCAACGCG
1 AATCGCAACGCG
152533 ATTTTTAAAG
Statistics
Matches: 141, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
80 16 0.11
81 103 0.73
82 21 0.15
83 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (81 bp):
AATCGCAACGCGTATCTGTAAATCGCAACGCGAATACGTAAATCGCAACGCGATACGTAAAATCG
CAACGAGTATCCGTAA
Found at i:153114 original size:20 final size:20
Alignment explanation
Indices: 153089--153179 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
153079 TTCTAAACTT
* *
153089 AAAATCACAACATGAAAATG
1 AAAATCGCAACACGAAAATG
153109 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
**
153129 ACTATCGCAACGA-GAGAAATG
1 AAAATCGCAAC-ACGA-AAATG
*
153150 AAAATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
153169 AAAATCGCAAC
1 AAAATCGCAAC
153180 GAGAGAATCG
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.26
20 29 0.48
21 16 0.26
ACGTcount: A:0.52, C:0.20, G:0.16, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:153150 original size:21 final size:20
Alignment explanation
Indices: 153089--153219 Score: 111
Period size: 19 Copynumber: 6.8 Consensus size: 20
153079 TTCTAAACTT
*
153089 AAAATCACAACATGA-AAATG
1 AAAATCGCAACA-GAGAAATG
153109 AAAATCGCAACACGA-AAATG
1 AAAATCGCAACA-GAGAAATG
**
153129 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC-AGAGAAATG
*
153150 AAAATCGCAAC-GCGAAATG
1 AAAATCGCAACAGAGAAATG
153169 AAAATCGCAAC-GAG--A-G
1 AAAATCGCAACAGAGAAATG
*
153185 --AATCGCAAC-GCGAAATG
1 AAAATCGCAACAGAGAAATG
153202 AAAATCGCAACGAGAGAA
1 AAAATCGCAAC-AGAGAA
153220 TCACAACGCG
Statistics
Matches: 92, Mismatches: 10, Indels: 17
0.77 0.08 0.14
Matches are distributed among these distances:
14 11 0.12
16 2 0.02
17 2 0.02
19 29 0.32
20 29 0.32
21 19 0.21
ACGTcount: A:0.50, C:0.19, G:0.20, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACAGAGAAATG
Found at i:153168 original size:19 final size:19
Alignment explanation
Indices: 153104--153246 Score: 117
Period size: 19 Copynumber: 7.9 Consensus size: 19
153094 CACAACATGA
*
153104 AAATGAAAATCGCAACACG
1 AAATGAAAATCGCAACGCG
** *
153123 AAAATGACTATCGCAACGAGAG
1 -AAATGAAAATCGCAAC--GCG
153145 AAATGAAAATCGCAACGCG
1 AAATGAAAATCGCAACGCG
153164 AAATGAAAATCGCAA--CG
1 AAATGAAAATCGCAACGCG
*
153181 --A-GAGAATCGCAACGCG
1 AAATGAAAATCGCAACGCG
153197 AAATGAAAATCGCAA--CG
1 AAATGAAAATCGCAACGCG
* *
153214 --A-GAGAATCACAACGCG
1 AAATGAAAATCGCAACGCG
*
153230 AAATGAAAATTGCAACG
1 AAATGAAAATCGCAACG
153247 AGATAATCGC
Statistics
Matches: 97, Mismatches: 14, Indels: 25
0.71 0.10 0.18
Matches are distributed among these distances:
14 19 0.20
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 37 0.38
20 14 0.14
21 14 0.14
22 1 0.01
ACGTcount: A:0.48, C:0.20, G:0.21, T:0.11
Consensus pattern (19 bp):
AAATGAAAATCGCAACGCG
Found at i:153179 original size:40 final size:40
Alignment explanation
Indices: 153104--153219 Score: 147
Period size: 33 Copynumber: 3.0 Consensus size: 40
153094 CACAACATGA
* **
153104 AAATGAAAATCGCAACACGAAAATGACTATCGCAACGAGAG
1 AAATGAAAATCGCAACGCG-AAATGAAAATCGCAACGAGAG
153145 AAATGAAAATCGCAACGCGAAATGAAAATCGCAAC--GAG
1 AAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
153183 --A-G--AATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
153218 AA
1 AA
153220 TCACAACGCG
Statistics
Matches: 68, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
33 28 0.41
35 4 0.06
36 1 0.01
38 3 0.04
40 14 0.21
41 18 0.26
ACGTcount: A:0.49, C:0.19, G:0.22, T:0.10
Consensus pattern (40 bp):
AAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:153190 original size:14 final size:14
Alignment explanation
Indices: 153171--153227 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
153161 GCGAAATGAA
153171 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
153185 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
153204 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
153218 AATCACAACG
1 AATCGCAACG
153228 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:153194 original size:33 final size:33
Alignment explanation
Indices: 153152--153276 Score: 205
Period size: 33 Copynumber: 3.8 Consensus size: 33
153142 GAGAAATGAA
153152 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
153185 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
* * *
153218 AATCACAACGCGAAATGAAAATTGCAACGAGAT
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
**
153251 AATCGCAACGCGAAACCAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCGCA
153277 TTGCGATTTT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 85 1.00
ACGTcount: A:0.46, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:153294 original size:19 final size:19
Alignment explanation
Indices: 153272--153398 Score: 85
Period size: 20 Copynumber: 7.1 Consensus size: 19
153262 GAAACCAAAA
*
153272 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
153291 TCGCGTTGCGA--TT-A--
1 TCGCGTTGCGATTTTCATT
*
153305 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
153324 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
153338 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
* **
153357 TATGCGTTGCGATAGTCATT
1 T-CGCGTTGCGATTTTCATT
*
153377 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
153397 TC
1 TC
153399 AACCAAAAGA
Statistics
Matches: 85, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.24
16 5 0.06
17 6 0.07
19 23 0.27
20 30 0.35
21 1 0.01
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:153319 original size:33 final size:33
Alignment explanation
Indices: 153277--153398 Score: 145
Period size: 33 Copynumber: 3.5 Consensus size: 33
153267 CAAAATCGCA
153277 TTGCGATTTTCATTTCGCGTTGCGATTATCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTATCTCG
*
153310 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTATCTCG
** *
153343 TTGCGATAGTCATTTATGCGTTGCGATAGTCATTCTCTCG
1 TTGCGATTTTCATTT-CGCGTTGCGAT--T-A---TCTCG
153383 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
153399 AACCAAAAGA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
33 45 0.61
34 10 0.14
36 1 0.01
40 18 0.24
ACGTcount: A:0.13, C:0.21, G:0.20, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTATCTCG
Found at i:153396 original size:20 final size:20
Alignment explanation
Indices: 153334--153389 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
153324 TCGCGTTGCG
153334 ATTCTCTCGTTGCGATAGTC
1 ATTCTCTCGTTGCGATAGTC
*
153354 ATT-TATGCGTTGCGATAGTC
1 ATTCTCT-CGTTGCGATAGTC
153374 ATTCTCTCGTTGCGAT
1 ATTCTCTCGTTGCGAT
153390 TTTCATTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.41
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:155243 original size:94 final size:94
Alignment explanation
Indices: 155082--155461 Score: 656
Period size: 94 Copynumber: 4.1 Consensus size: 94
155072 TAGATTGCTT
* *
155082 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
155147 ATTTGTCTTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
155176 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
155241 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * *
155270 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACCGTGAATTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
155335 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * * *
155364 AGTAAATTTGTTCGGTTGTTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
155429 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
155457 AGTAA
1 AGTAA
155462 TGCAATCCAT
Statistics
Matches: 275, Mismatches: 10, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
93 26 0.09
94 249 0.91
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.47
Consensus pattern (94 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:155602 original size:19 final size:19
Alignment explanation
Indices: 155578--155623 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
155568 GCAACGAGAG
155578 AATCGCAACAAGAAATGAA
1 AATCGCAACAAGAAATGAA
**
155597 AATCGCAACGCGAAATGAA
1 AATCGCAACAAGAAATGAA
*
155616 AACCGCAA
1 AATCGCAA
155624 TGACAAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.52, C:0.22, G:0.17, T:0.09
Consensus pattern (19 bp):
AATCGCAACAAGAAATGAA
Found at i:155673 original size:19 final size:19
Alignment explanation
Indices: 155627--155664 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
155617 ACCGCAATGA
*
155627 CAAAATCGCAATGCGAAAC
1 CAAAATCGCAACGCGAAAC
155646 CAAAATCGCAACGCGAAAC
1 CAAAATCGCAACGCGAAAC
155665 TATAATCGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.29, G:0.16, T:0.08
Consensus pattern (19 bp):
CAAAATCGCAACGCGAAAC
Found at i:155733 original size:20 final size:20
Alignment explanation
Indices: 155708--155774 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
155698 GATTCTCTCG
**
155708 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
155728 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
155748 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
155768 TTGCGAT
1 TTGCGAT
155775 TATAAGTTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:156348 original size:21 final size:21
Alignment explanation
Indices: 156257--156360 Score: 84
Period size: 21 Copynumber: 5.0 Consensus size: 21
156247 GACTCACGTG
* **
156257 TCATCATTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTA
156279 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTA
** *
156299 TCATCCCTCAAGAGTCCCCTA
1 TCATCGTTCAAGAGGCCCCTA
* * * *
156320 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTA
* *
156341 TCATCGTTGAAGAGGTCCCT
1 TCATCGTTCAAGAGGCCCCT
156361 CCCAACATTC
Statistics
Matches: 63, Mismatches: 18, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
20 3 0.05
21 59 0.94
22 1 0.02
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTA
Found at i:157737 original size:14 final size:14
Alignment explanation
Indices: 157718--157753 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
157708 ATTGTTTAAT
157718 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
157732 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
157746 TGATTTGT
1 TGATTTGT
157754 TCAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:157943 original size:34 final size:33
Alignment explanation
Indices: 157866--157950 Score: 125
Period size: 33 Copynumber: 2.5 Consensus size: 33
157856 TCTCAACGCG
**
157866 GAAATGACTATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
*
157899 GAAATGAAAATCGCAACGAGTGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
*
157932 GAAAATGAAAATAGCAACG
1 G-AAATGAAAATCGCAACG
157951 CGAAACTAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 31 0.66
34 16 0.34
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.14
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:157985 original size:20 final size:19
Alignment explanation
Indices: 157959--158139 Score: 103
Period size: 20 Copynumber: 9.8 Consensus size: 19
157949 CGCGAAACTA
*
157959 ATTTCGCGTTGCGATTTTC
1 ATTTCGCGTTGCGATATTC
*
157978 ATTTTCGCATTGCG--ATTC
1 A-TTTCGCGTTGCGATATTC
* *
157996 A---CTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATATTC
* * *
158012 ATTTCGCATTACGATTTTC
1 ATTTCGCGTTGCGATATTC
*
158031 ATTTCGCATTGCG--ATTC
1 ATTTCGCGTTGCGATATTC
* *
158048 ---TCTCGTTGCGATAATC
1 ATTTCGCGTTGCGATATTC
*
158064 ATTTCCGCGTTGCGATAGTC
1 ATTT-CGCGTTGCGATATTC
* * *
158084 AATTCCGCATTGCGATAGTC
1 -ATTTCGCGTTGCGATATTC
* *
158104 ATTTCCGTGTTGCGATAGTC
1 ATTT-CGCGTTGCGATATTC
158124 ATATTCGCGTTGCGAT
1 AT-TTCGCGTTGCGAT
158140 TTCCGCGTTG
Statistics
Matches: 126, Mismatches: 21, Indels: 29
0.72 0.12 0.16
Matches are distributed among these distances:
14 15 0.12
16 7 0.06
17 3 0.02
18 4 0.03
19 29 0.23
20 63 0.50
21 5 0.04
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (19 bp):
ATTTCGCGTTGCGATATTC
Found at i:158053 original size:52 final size:53
Alignment explanation
Indices: 157959--158068 Score: 168
Period size: 52 Copynumber: 2.1 Consensus size: 53
157949 CGCGAAACTA
* * **
157959 ATTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATTTTC
1 ATTTCGCATTACGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATAATC
*
158012 ATTTCGCATTACGATTTTCA-TTTCGCATTGCGATTCTCTCGTTGCGATAATC
1 ATTTCGCATTACGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATAATC
158064 ATTTC
1 ATTTC
158069 CGCGTTGCGA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
52 34 0.65
53 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.45
Consensus pattern (53 bp):
ATTTCGCATTACGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATAATC
Found at i:158108 original size:40 final size:40
Alignment explanation
Indices: 158053--158139 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
158043 GATTCTCTCG
158053 TTGCGATAATCATTTCCGCGTTGCGATAGTCA-ATTCCGCA
1 TTGCGATAATCATTTCCGCGTTGCGATAGTCATATT-CGCA
* * *
158093 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCGCG
1 TTGCGATAATCATTTCCGCGTTGCGATAGTCATATTCGCA
158133 TTGCGAT
1 TTGCGAT
158140 TTCCGCGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 40 0.93
41 3 0.07
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (40 bp):
TTGCGATAATCATTTCCGCGTTGCGATAGTCATATTCGCA
Found at i:160069 original size:24 final size:24
Alignment explanation
Indices: 160035--160088 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
160025 CTGAAAAATC
160035 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
160059 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
160083 ATCAAA
1 ATCAAA
160089 TTTCAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:160962 original size:20 final size:20
Alignment explanation
Indices: 160932--161505 Score: 357
Period size: 20 Copynumber: 28.5 Consensus size: 20
160922 GTTAGAATCT
*
160932 CGTTGCAATTTACAG-ATTCG
1 CGTTGCGATTTAC-GTATTCG
*
160952 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
160972 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
160992 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
161012 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
*
161032 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
*
161052 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
*
161072 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
161092 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
* * * * *
161112 CATTGCGAATTAGGAAAATCG
1 CGTTGCGATTTACG-TATTCG
*** ** * *
161133 CAACGCGAATTTGGGAAATCG
1 CGTTGCG-ATTTACGTATTCG
** * *
161154 CAATGCGATAGT-CAG-AATCG
1 CGTTGCGAT-TTAC-GTATTCG
* * **
161174 CGTTGCGA-AT-CTGGAAACTG
1 CGTTGCGATTTAC-GTATTC-G
** * *
161194 ATTTGCGA--TACCGGAGATCG
1 CGTTGCGATTTA-CGTA-TTCG
*
161214 CGTTGCGAATTATCG-A-TCG
1 CGTTGCGATTTA-CGTATTCG
* *
161233 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGTATTCG
161253 CGTTGCGATTTTACGTATT-G
1 CGTTGCGA-TTTACGTATTCG
* *
161273 TCGTTGCGATTTACGGATACG
1 -CGTTGCGATTTACGTATTCG
* *
161294 CATTGCGATTTACGTATTCT
1 CGTTGCGATTTACGTATTCG
* *
161314 CGTTACGATTTACAG-ATACG
1 CGTTGCGATTTAC-GTATTCG
*
161334 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACGTATTCG
* * *
161354 CGTTGTGATTTACGGATACG
1 CGTTGCGATTTACGTATTCG
161374 CGTTGCGATTTTACGTATT-G
1 CGTTGCGA-TTTACGTATTCG
* *
161394 TCGTTGCGATTTACGGATACG
1 -CGTTGCGATTTACGTATTCG
* * * *
161415 CGTTGTGATTTTACGGATACT
1 CGTTGCGA-TTTACGTATTCG
* *
161436 CGTTGCGATAGT-CAG-AATCG
1 CGTTGCGAT-TTAC-GTATTCG
* *** *
161456 AGTTGCGATTTTTATGTTCG
1 CGTTGCGATTTACGTATTCG
* *
161476 CGTTGCGATTTTCATATTCG
1 CGTTGCGATTTACGTATTCG
161496 CGTTGCGATT
1 CGTTGCGATT
161506 CTGGAAAATC
Statistics
Matches: 457, Mismatches: 70, Indels: 54
0.79 0.12 0.09
Matches are distributed among these distances:
18 5 0.01
19 22 0.05
20 339 0.74
21 82 0.18
22 9 0.02
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (20 bp):
CGTTGCGATTTACGTATTCG
Found at i:161140 original size:21 final size:21
Alignment explanation
Indices: 161116--161161 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
161106 TATTCGCATT
161116 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
161137 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
161158 GCGA
1 GCGA
161162 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:161283 original size:41 final size:41
Alignment explanation
Indices: 161233--161444 Score: 329
Period size: 41 Copynumber: 5.2 Consensus size: 41
161223 TTATCGATCG
*
161233 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
161274 CGTTGCGATTTACGGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
161314 CGTTACGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
161354 CGTTGTGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* * *
161395 CGTTGCGATTTACGGATACGCGTTGTGATTTTACGGATACT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
161436 CGTTGCGAT
1 CGTTGCGAT
161445 AGTCAGAATC
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 73 0.47
41 83 0.53
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:161566 original size:42 final size:42
Alignment explanation
Indices: 161473--161566 Score: 95
Period size: 42 Copynumber: 2.3 Consensus size: 42
161463 ATTTTTATGT
* *
161473 TCGCGTTGCG-ATTTTCATATTCGCGTTGCGATTCTGGAAAA
1 TCGCGTTGCGAATTTTCATATTCGCATTGCGATTCTGCAAAA
** * *
161514 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTCTTCATAA
1 TCGCGTTGCGAATTT-TCA-TATTCGCATTGCGATTCTGCAAAA
161556 TCGCGTTGCGA
1 TCGCGTTGCGA
161567 TTCTGGGAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
41 8 0.19
42 31 0.74
43 3 0.07
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (42 bp):
TCGCGTTGCGAATTTTCATATTCGCATTGCGATTCTGCAAAA
Found at i:161604 original size:20 final size:19
Alignment explanation
Indices: 161555--161608 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
161545 ATTCTTCATA
161555 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
161574 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
161595 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
161609 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:163186 original size:23 final size:22
Alignment explanation
Indices: 163147--163189 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
163137 AATAGACTAA
163147 TTTAATTAATTAAATATATACT
1 TTTAATTAATTAAATATATACT
*
163169 TTTAATTATTTTAAATATATA
1 TTTAATTA-ATTAAATATATA
163190 TTTAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTAATTAATTAAATATATACT
Found at i:163193 original size:21 final size:20
Alignment explanation
Indices: 163146--163194 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 20
163136 AAATAGACTA
163146 ATTTAATTAATTAAATATAT
1 ATTTAATTAATTAAATATAT
*
163166 ACTTTTAATTATTTTAAATATAT
1 A--TTTAATTA-ATTAAATATAT
163189 ATTTAA
1 ATTTAA
163195 AATTTGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 1 0.04
21 5 0.20
22 8 0.32
23 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTAATTAATTAAATATAT
Found at i:169733 original size:25 final size:26
Alignment explanation
Indices: 169689--169763 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 26
169679 AAACTACACC
169689 TTGTGAAATATATAATATATATTTATA
1 TTGT-AAATATATAATATATATTTATA
169716 TTGTAAAATATATAATATATATTTATA
1 TTGT-AAATATATAATATATATTTATA
169743 TTGTAAATATAT-ATATATATT
1 TTGTAAATATATAATATATATT
169764 ATTTGAGGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 9 0.19
26 8 0.17
27 30 0.64
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (26 bp):
TTGTAAATATATAATATATATTTATA
Found at i:169855 original size:30 final size:27
Alignment explanation
Indices: 169821--169876 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
169811 TACACACTTG
169821 GTGAAATATATTATAAAATATATTTATATT
1 GTGAAATATA-TAT--AATATATTTATATT
*
169851 GTGAAATATATATTATATATTTATAT
1 GTGAAATATATATAATATATTTATAT
169877 ATTTATATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 12 0.48
29 3 0.12
30 10 0.40
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (27 bp):
GTGAAATATATATAATATATTTATATT
Found at i:169902 original size:7 final size:7
Alignment explanation
Indices: 169886--169923 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
169876 TATTTATATT
169886 GAGA-GA
1 GAGAGGA
169892 GAGAGGA
1 GAGAGGA
169899 GAGAGGA
1 GAGAGGA
169906 GAGA-G-
1 GAGAGGA
169911 GAGAGGA
1 GAGAGGA
169918 GAGAGG
1 GAGAGG
169924 GCCTTCTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.14
6 6 0.21
7 19 0.66
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (7 bp):
GAGAGGA
Found at i:169914 original size:12 final size:12
Alignment explanation
Indices: 169886--169923 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
169876 TATTTATATT
169886 GAGA-GAGAGAGG
1 GAGAGGAGAGA-G
169898 AGAGAGGAGAGAG
1 -GAGAGGAGAGAG
169911 GAGAGGAGAGAG
1 GAGAGGAGAGAG
169923 G
1 G
169924 GCCTTCTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 13 0.54
13 5 0.21
14 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (12 bp):
GAGAGGAGAGAG
Found at i:170461 original size:19 final size:19
Alignment explanation
Indices: 170437--170475 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
170427 TCTTCCGAGA
170437 TTCGTTCTGCATGCGCCTG
1 TTCGTTCTGCATGCGCCTG
170456 TTCGTTCTGCATGCGCCTG
1 TTCGTTCTGCATGCGCCTG
170475 T
1 T
170476 CTTCTTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.31, G:0.26, T:0.38
Consensus pattern (19 bp):
TTCGTTCTGCATGCGCCTG
Found at i:170516 original size:18 final size:18
Alignment explanation
Indices: 170493--170527 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
170483 GTGTCCGAAG
170493 CGTGAGATTCGTCTGAAA
1 CGTGAGATTCGTCTGAAA
170511 CGTGAGATTCGTCTGAA
1 CGTGAGATTCGTCTGAA
170528 GCAGTTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTGAGATTCGTCTGAAA
Found at i:171455 original size:8 final size:8
Alignment explanation
Indices: 171442--171671 Score: 181
Period size: 8 Copynumber: 30.5 Consensus size: 8
171432 GTAATATATC
171442 TAATGATT
1 TAATGATT
171450 TAATGATT
1 TAATGATT
171458 TAATGATT
1 TAATGATT
*
171466 TAAT-A-A
1 TAATGATT
*
171472 TAATTACTT
1 TAATGA-TT
171481 TAATGATT
1 TAATGATT
*
171489 TAA--CTT
1 TAATGATT
171495 TAATGATT
1 TAATGATT
*
171503 TAAT-A-A
1 TAATGATT
*
171509 TAATTACTT
1 TAATGA-TT
171518 TAATGATT
1 TAATGATT
171526 TAATGATT
1 TAATGATT
171534 TAATGATT
1 TAATGATT
*
171542 TAAT-A-A
1 TAATGATT
*
171548 TAATTATTT
1 TAATGA-TT
171557 TAATGATT
1 TAATGATT
171565 TAATGATT
1 TAATGATT
171573 TAATGATT
1 TAATGATT
171581 TAATGATT
1 TAATGATT
*
171589 TAAT-A-A
1 TAATGATT
*
171595 TAATTACTT
1 TAATGA-TT
171604 TAATGATT
1 TAATGATT
171612 TAAT--TT
1 TAATGATT
*
171618 TAATAATT
1 TAATGATT
*
171626 TAAT-A-A
1 TAATGATT
* *
171632 TAATTACT
1 TAATGATT
171640 TAAT--TT
1 TAATGATT
171646 TAATGATT
1 TAATGATT
171654 TAAT--TT
1 TAATGATT
171660 TAATGATT
1 TAATGATT
171668 TAAT
1 TAAT
171672 AATAATTACT
Statistics
Matches: 183, Mismatches: 17, Indels: 44
0.75 0.07 0.18
Matches are distributed among these distances:
6 42 0.23
7 10 0.05
8 111 0.61
9 20 0.11
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (8 bp):
TAATGATT
Found at i:171485 original size:39 final size:38
Alignment explanation
Indices: 171442--171717 Score: 290
Period size: 42 Copynumber: 6.8 Consensus size: 38
171432 GTAATATATC
171442 TAATGATTTAATGATTTAATGATTTAATAATAATTACTT
1 TAATGATTTAAT-ATTTAATGATTTAATAATAATTACTT
*
171481 TAATGATTTAA-CTTTAATGATTTAATAATAATTACTT
1 TAATGATTTAATATTTAATGATTTAATAATAATTACTT
*
171518 TAATGATTTAATGATTTAATGATTTAATAATAATTATTTTAATGATT
1 TAATGATTTAAT-ATTTAATGATTTAATAAT-A--A--TT-A--CTT
171565 TAATGATTTAATGATTTAATGATTTAATAATAATTACTT
1 TAATGATTTAAT-ATTTAATGATTTAATAATAATTACTT
*
171604 TAATGATTTAAT-TTTAATAATTTAATAATAATTACTTAATTT
1 TAATGATTTAATATTTAATGATTTAATAATAATTAC-----TT
171646 TAATGATTTAAT-TTTAATGATTTAATAATAATTACTTGACTT
1 TAATGATTTAATATTTAATGATTTAATAAT-A--A-TT-ACTT
* *
171688 TAATGATTT-ATATTTACTGATATAATAATA
1 TAATGATTTAATATTTAATGATTTAATAATA
171718 GTAAATATAT
Statistics
Matches: 208, Mismatches: 8, Indels: 40
0.81 0.03 0.16
Matches are distributed among these distances:
37 58 0.28
39 42 0.20
40 1 0.00
41 4 0.02
42 59 0.28
43 1 0.00
44 3 0.01
45 2 0.01
46 3 0.01
47 35 0.17
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.50
Consensus pattern (38 bp):
TAATGATTTAATATTTAATGATTTAATAATAATTACTT
Found at i:171569 original size:47 final size:45
Alignment explanation
Indices: 171524--171671 Score: 205
Period size: 47 Copynumber: 3.3 Consensus size: 45
171514 ACTTTAATGA
171524 TTTAATGATTTAATGATTTAATAATAATTATTTTAATGATTTAAT
1 TTTAATGATTTAATGATTTAATAATAATTATTTTAATGATTTAAT
*
171569 GATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAAT
1 --TTTAATGATTTAATGATTTAATAATAATTATTTTAATGATTTAAT
* * *
171616 TTTAATAATTTAAT-A-ATAAT--TACTTAATTTTAATGATTTAAT
1 TTTAATGATTTAATGATTTAATAATAATT-ATTTTAATGATTTAAT
171658 TTTAATGATTTAAT
1 TTTAATGATTTAAT
171672 AATAATTACT
Statistics
Matches: 94, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
41 4 0.04
42 28 0.30
43 4 0.04
44 1 0.01
45 13 0.14
47 44 0.47
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (45 bp):
TTTAATGATTTAATGATTTAATAATAATTATTTTAATGATTTAAT
Found at i:171587 original size:123 final size:122
Alignment explanation
Indices: 171442--171679 Score: 397
Period size: 123 Copynumber: 1.9 Consensus size: 122
171432 GTAATATATC
*
171442 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATGATTTAAT
1 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAAT
171507 AATAATTAC-TTTAATGATTTAATGATTTAATGATTTAATAATAATTATTTTAATGATT
66 AATAATTACTTTTAATGATTTAAT--TTTAATGATTTAATAATAATTATTTTAATGATT
*
171565 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAATTTTAATAATTTAAT
1 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAAT
171630 AATAATTACTTAATTTTAATGATTTAATTTTAATGATTTAATAATAATTA
66 AATAATTAC----TTTTAATGATTTAATTTTAATGATTTAATAATAATTA
171680 CTTGACTTTA
Statistics
Matches: 108, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
123 72 0.67
126 22 0.20
128 14 0.13
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (122 bp):
TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAAT
AATAATTACTTTTAATGATTTAATTTTAATGATTTAATAATAATTATTTTAATGATT
Found at i:171663 original size:28 final size:28
Alignment explanation
Indices: 171524--171671 Score: 102
Period size: 31 Copynumber: 5.0 Consensus size: 28
171514 ACTTTAATGA
171524 TTTAATGATTTAATGATTTAATAATAATT-AT
1 TTTAATGATTTAAT--TTTAATAAT--TTAAT
*
171555 TTTAATGATTTAATGATTTAATGATTTAAT
1 TTTAATGATTTAAT--TTTAATAATTTAAT
* * *
171585 GATTTAATAATAATT-ACTTTAATGATTTAAT
1 --TTTAATGAT--TTAATTTTAATAATTTAAT
* ** * *
171616 TTTAATAATTTAATAATAATTACTTAAT
1 TTTAATGATTTAATTTTAATAATTTAAT
*
171644 TTTAATGATTTAATTTTAATGATTTAAT
1 TTTAATGATTTAATTTTAATAATTTAAT
171672 AATAATTACT
Statistics
Matches: 98, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.02
28 34 0.35
29 11 0.11
30 2 0.02
31 38 0.39
32 8 0.08
33 1 0.01
34 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (28 bp):
TTTAATGATTTAATTTTAATAATTTAAT
Found at i:171690 original size:123 final size:120
Alignment explanation
Indices: 171442--171717 Score: 391
Period size: 123 Copynumber: 2.3 Consensus size: 120
171432 GTAATATATC
*
171442 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATGATTTAAT
1 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAAT
*
171507 AATAATTACTTTAATGATTTAATGATTTAATGATTTAATAATAATTATTTTAATGATT
66 AATAATTACTTTAATGATTTAAT-ATTTAATGATTTAATAATAATTA-TCT-ATGATT
*
171565 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAATTTTAATAATTTAAT
1 TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAAT
171630 AATAATTACTTAATTTTAATGATTTAAT-TTTAATGATTTAATAATAATTA-CT-TGACTT
66 AATAATTAC-----TTTAATGATTTAATATTTAATGATTTAATAATAATTATCTATGA-TT
* *
171688 TAATGATTT-AT-ATTTACTGATATAATAATA
1 TAATGATTTAATGATTTAATGATTTAATAATA
171718 GTAAATATAT
Statistics
Matches: 142, Mismatches: 5, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
121 17 0.12
122 5 0.04
123 83 0.58
124 1 0.01
126 22 0.15
128 14 0.10
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.50
Consensus pattern (120 bp):
TAATGATTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAAT
AATAATTACTTTAATGATTTAATATTTAATGATTTAATAATAATTATCTATGATT
Found at i:174191 original size:172 final size:169
Alignment explanation
Indices: 173903--174246 Score: 528
Period size: 172 Copynumber: 2.0 Consensus size: 169
173893 CATCAAATAT
* *
173903 AAAATGATCCCTAATTACTATTTTCTCAACATTTTCAAACTTTGCAATTTAATCACTAAATTATA
1 AAAACGATCCCTAATTACTATTTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATTATA
*
173968 AATTCTTTCAAATTTAACCAATTAAGCATATTAATACTAAATTCAAGCATAGTATACCAACTTTT
66 AATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAACTTTT
* * *
174033 TATAATTTACTCTAATTTCTTAAATTCCTCAAATTTTGC
131 AATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
*
174072 AAAACGATCCCTAATTACTATTTGGTTCTCAACATTTTCAAAGTTAGCAATTTAATC-CATAAAT
1 AAAACGATCCCTAATTACTA-TT--TTCTCAACATTTTCAAACTTAGCAATTTAATCAC-TAAAT
* * * *
174136 TTTAAATTCTTTCTAATTTAACCAATTAAGCATACTAATACTAAATTCCAGCATAGTATAGCAAC
62 TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAAC
* *
174201 TTTTAATAATTTACTCTTATTCCTTAAATTCCTTAAATTTTAC
127 TTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
174244 AAA
1 AAA
174247 TGGTCCCTAA
Statistics
Matches: 158, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
169 19 0.12
170 2 0.01
171 1 0.01
172 136 0.86
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (169 bp):
AAAACGATCCCTAATTACTATTTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATTATA
AATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAACTTTT
AATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
Found at i:174793 original size:22 final size:22
Alignment explanation
Indices: 174765--174818 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
174755 AGGACCCAGG
174765 ACCCGTGATTTCTCCTTGCAGA
1 ACCCGTGATTTCTCCTTGCAGA
* *
174787 ACCCGTGCTCTCTCCTTGCAGA
1 ACCCGTGATTTCTCCTTGCAGA
174809 ACCCGTGATT
1 ACCCGTGATT
174819 CTCACGTCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.17, C:0.35, G:0.19, T:0.30
Consensus pattern (22 bp):
ACCCGTGATTTCTCCTTGCAGA
Found at i:175377 original size:44 final size:46
Alignment explanation
Indices: 175306--175398 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 46
175296 GCACACGCGA
175306 GCACGCACACACACAAGCGCTCATTTGAATTCA-G-ATACACACAC
1 GCACGCACACACACAAGCGCTCATTTGAATTCAGGTATACACACAC
* * * * *
175350 GCACGCACGCACACATGTGCTCGTTTGAATTCAGGTATACACGCAC
1 GCACGCACACACACAAGCGCTCATTTGAATTCAGGTATACACACAC
175396 GCA
1 GCA
175399 TGAGCGCGCG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 29 0.69
45 1 0.02
46 12 0.29
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.18
Consensus pattern (46 bp):
GCACGCACACACACAAGCGCTCATTTGAATTCAGGTATACACACAC
Found at i:175493 original size:32 final size:32
Alignment explanation
Indices: 175457--175521 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
175447 CACGCGCGCG
175457 CACACACATAGGCGCTTGTTTGAATTCAAGTA
1 CACACACATAGGCGCTTGTTTGAATTCAAGTA
* *
175489 CACACACATAGGCGCTTGTTTGAGTTCAGGTA
1 CACACACATAGGCGCTTGTTTGAATTCAAGTA
175521 C
1 C
175522 GCACGCACGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (32 bp):
CACACACATAGGCGCTTGTTTGAATTCAAGTA
Found at i:175597 original size:80 final size:80
Alignment explanation
Indices: 175447--175601 Score: 213
Period size: 80 Copynumber: 1.9 Consensus size: 80
175437 CGTGGGTGCA
* * * * * ** *
175447 CACGCGCGCGCACACACATAGGCGCTTGTTTGAATTCAAGTACACACACATAGGCGCTTGTTTGA
1 CACGCGCACGCACACACATAGGCGCTCGTTTGAATTCAAGCACACACACATAAGCCCTCATTTAA
*
175512 GTTCAGGTACGCACG
66 ATTCAGGTACGCACG
175527 CACGCGCACGCACACACATAGGCGCTCGTTTGAATTC-AGACACACACACATAAGCCCTCATTTA
1 CACGCGCACGCACACACATAGGCGCTCGTTTGAATTCAAG-CACACACACATAAGCCCTCATTTA
175591 AATTCAGGTAC
65 AATTCAGGTAC
175602 ACACACATAG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
79 2 0.03
80 63 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (80 bp):
CACGCGCACGCACACACATAGGCGCTCGTTTGAATTCAAGCACACACACATAAGCCCTCATTTAA
ATTCAGGTACGCACG
Found at i:175632 original size:32 final size:32
Alignment explanation
Indices: 175537--175636 Score: 119
Period size: 32 Copynumber: 3.1 Consensus size: 32
175527 CACGCGCACG
* * **
175537 CACACACATAGGCGCTCGTTTGAATTCAGACA
1 CACACACATAGGCACTCGTTTAAATTCAGGTA
* * *
175569 CACACACATAAGCCCTCATTTAAATTCAGGTA
1 CACACACATAGGCACTCGTTTAAATTCAGGTA
* *
175601 CACACACATAGGCACTCGTTTCAATTTAGGTA
1 CACACACATAGGCACTCGTTTAAATTCAGGTA
175633 CACA
1 CACA
175637 TGTGCGCACC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (32 bp):
CACACACATAGGCACTCGTTTAAATTCAGGTA
Found at i:177031 original size:26 final size:28
Alignment explanation
Indices: 176972--177033 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
176962 ATATAAATAA
*
176972 AAATAATAATAATGAAATAATAATTAAAGC
1 AAATAATAATAATAAAATAATAATT--AGC
177002 -AATAATAATAATAAAATAAT-ATT-GC
1 AAATAATAATAATAAAATAATAATTAGC
177027 AAATAAT
1 AAATAAT
177034 GATTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 2 0.07
26 6 0.20
28 3 0.10
29 19 0.63
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
AAATAATAATAATAAAATAATAATTAGC
Found at i:177804 original size:6 final size:6
Alignment explanation
Indices: 177782--177817 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
177772 TATTTTTCAT
*
177782 TGTTGG T-TTGT TGTTGG TGTTGG TGTTGG TGTTGG T
1 TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG T
177818 TCTTGGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.44, T:0.56
Consensus pattern (6 bp):
TGTTGG
Found at i:178569 original size:214 final size:212
Alignment explanation
Indices: 178178--178605 Score: 806
Period size: 214 Copynumber: 2.0 Consensus size: 212
178168 AACGGCGACC
178178 ATGTGGCCCTAGGGTATCATAACCCTAGGGTTTTCTGCTGGGACCTGAACCGTTGGATCAATGCT
1 ATGTGGCCCTAGGGTATCATAACCCTAGGGTTTTCTGCTGGGACCTGAACCGTTGGATCAATGCT
178243 AGATCCAACGGTGGAGAAGCAAAGCGGCGGCAACACTAGGATAGAAAACCCTAGTTGGGTTTTAG
66 AGATCCAACGGTGGAGAAGCAAAGCGGCGGCAACACTAGGATAGAAAACCCTAGTTGGGTTTTAG
178308 GGTTTCTGATAGGTTTGCTCAGTTGGGCCAGAATTGGGCTCCTGTTTGGGTTGTAATTTGGGCCT
131 GGTTTCTGATAGGTTTGCTCAGTTGGGCCAGAATTGGGCTCCTGTTTGGGTTGTAATTTGGGCCT
178373 GTAATATATATAATAATA
196 GTAATATATA-AATAATA
178391 ATGTGGCCCTAGGGTATCATAACCCTAGGG-TTTCTGCTGGGACCATCTGAACCGTTGGATCAAT
1 ATGTGGCCCTAGGGTATCATAACCCTAGGGTTTTCTGCTGGGA-C--CTGAACCGTTGGATCAAT
178455 GCTAGATCCAACGGTGGAGAAGCAAAGCGGCGGCAACACTAGGATAG-AAACCCTAGTTGGGTTT
63 GCTAGATCCAACGGTGGAGAAGCAAAGCGGCGGCAACACTAGGATAGAAAACCCTAGTTGGGTTT
178519 TAGGGTTTCTGATAGGTTTGCTCAGTTGGGCCAGAATTGGGCTCCTGTTTGGGTTGTAATTTGGG
128 TAGGGTTTCTGATAGGTTTGCTCAGTTGGGCCAGAATTGGGCTCCTGTTTGGGTTGTAATTTGGG
178584 CCTGTAATATATAAATAATA
193 CCTGTAATATATAAATAATA
178604 AT
1 AT
178606 AATATAATAA
Statistics
Matches: 212, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
212 12 0.06
213 40 0.19
214 95 0.45
215 65 0.31
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (212 bp):
ATGTGGCCCTAGGGTATCATAACCCTAGGGTTTTCTGCTGGGACCTGAACCGTTGGATCAATGCT
AGATCCAACGGTGGAGAAGCAAAGCGGCGGCAACACTAGGATAGAAAACCCTAGTTGGGTTTTAG
GGTTTCTGATAGGTTTGCTCAGTTGGGCCAGAATTGGGCTCCTGTTTGGGTTGTAATTTGGGCCT
GTAATATATAAATAATA
Found at i:178605 original size:3 final size:3
Alignment explanation
Indices: 178597--178660 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
178587 GTAATATATA
178597 AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
178643 AAT AAT AAT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT A
178661 TAAAAAAAAC
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 6 0.10
3 52 0.90
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:178610 original size:17 final size:17
Alignment explanation
Indices: 178588--178664 Score: 92
Period size: 17 Copynumber: 4.6 Consensus size: 17
178578 TTTGGGCCTG
178588 TAATATATAAATAATAA
1 TAATATATAAATAATAA
178605 TAATATA-ATAATAATAA
1 TAATATATA-AATAATAA
178622 TAATA-ATATAATAATAA
1 TAATATATA-AATAATAA
178639 TAATA-AT-AATAATAA
1 TAATATATAAATAATAA
178654 T-ATAATATAAA
1 TAAT-ATATAAA
178665 AAAAACAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.04
15 10 0.18
16 4 0.07
17 39 0.71
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATATATAAATAATAA
Found at i:178622 original size:20 final size:20
Alignment explanation
Indices: 178597--178660 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
178587 GTAATATATA
178597 AATAATAATAATATAATAAT
1 AATAATAATAATATAATAAT
178617 AATAATAATAATATAATAAT
1 AATAATAATAATATAATAAT
178637 AATAATAATAATAATAAT-AT
1 AATAATAATAAT-ATAATAAT
178657 AATA
1 AATA
178661 TAAAAAAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 38 0.88
21 5 0.12
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AATAATAATAATATAATAAT
Found at i:179099 original size:113 final size:113
Alignment explanation
Indices: 178897--179890 Score: 1299
Period size: 113 Copynumber: 8.8 Consensus size: 113
178887 AAAGGTTAAG
* * * *
178897 CAAGTTCTTCTCATTATGAACTCCTTCTTCC-TCTTCAGACGGGTTCTTCTCATTATGAACACCT
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TCT
* * * * **
178961 -TTTGGAAATGTTGATCCATC-AAGTGATGTATTTGAGC-AAAAGGTTGAA
65 ATCTGGCAATGCTGATCCATCGAA-TGATGAATTCAAGCGAAAA-GTTGAA
*
179009 CAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
* * * * * * *
179074 ACTGGCACTACTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAA
66 TCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
*
179122 CAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
* * *
179187 ACTGGCACTGCTGATCAATCGAATGATGAATTCAAGCGAAAAGTTGAA
66 TCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
* *
179235 CAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT-AACTCTC
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
* * * * * *
179299 TCTGGAAAAGTTGATCCATCTAGTGATGAATTCAAACGAAAAGTTGAA
66 TCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
* * * *
179347 CAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATGAGTTCTTCTCATTACGAACACCT
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TCT
* * * * *
179412 -TCTGGAAATGTTGATCCATCTAGTGATGAATTCAAACGAAAAGTTGAA
65 ATCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
179460 CAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACT
1 CAAGTTCTTCTCATTATGAACTTCTTCTTC---CTTCTTCAGATGAGTTCTTCTCATTATGAACT
* * *
179525 CGA-CATGGTAATGCTGATCGATCGAATGATGAATTCAAGCGAAAAGTTGAA
63 CTATC-TGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
*
179576 CAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
* * * *
179641 CCTGGCACTGCTAATCAATCGAATGATGAATTCAAGCGAAAAGTTGAA
66 TCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
* *
179689 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGA
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
* * * *
179754 CCTGGTAATGCTGATCTATCGAATGATGAATTCAAGCAAAAAGTTGAA
66 TCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
* * *
179802 CAAGTTCTTCTTATTAT---CTTCTTCTT-CTTCTTTAGATGAGTTCTTCTTATTATGAACTCTA
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
* * * *
179863 TTTGGCACTGTTGATCCATTGAATGATG
66 TCTGGCAATGCTGATCCATCGAATGATG
179891 GATTTAAATC
Statistics
Matches: 792, Mismatches: 78, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
109 52 0.07
110 9 0.01
112 129 0.16
113 494 0.62
114 8 0.01
115 2 0.00
116 98 0.12
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (113 bp):
CAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTA
TCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAA
Found at i:179650 original size:454 final size:451
Alignment explanation
Indices: 178897--179858 Score: 1454
Period size: 454 Copynumber: 2.1 Consensus size: 451
178887 AAAGGTTAAG
* * * *
178897 CAAGTTCTTCTCATTATGAACTCCTTCTTCCTCTTCAGACGGGTTCTTCTCATTATGAACACCTT
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACACCTT
* * ** *
178962 TTGGAAATGTTGATCCATCAAGTGATGTATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATG
66 CTGGAAATGTTGATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAGCTCTTCTCATTATG
* *
179027 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCACTACTGATCCA
131 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGCAATACTGATCCA
* *
179092 CCGAGTGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCT
196 CCGAATGATGAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCT
*
179157 TCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCACTGCTGATCAATCGAATGATGAATTCAA
261 TCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCACTGCTAATCAATCGAATGATGAATTCAA
* *
179222 GCGAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
326 GCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTC
* * * * *
179287 ATTAT-AACTC-TCTCTGGAAAAGTTGATCCATCTAGTGATGAATTCAAACGAAAAGTTGAA
391 ATTATGAACTCGAC-CTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAA
* *
179347 CAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATGAGTTCTTCTCATTACGAACACCT
1 CAAGTTCTTCTCATTATGAACTTCTTCTTC-TTCTTCAGATGAGTTCTTCTCATTATGAACACCT
* *
179412 TCTGGAAATGTTGATCCATCTAGTGATGAATTCAAACGAAAA-GTTGAACAAGTTCTTCTCATTA
65 TCTGGAAATGTTGATCCATCAAGTGATGAATTCAAAC-AAAAGGTTGAACAAGCTCTTCTCATTA
* *
179476 TGAACTTCTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCG-ACATGGTAATGCT
129 TGAACTTCTTCTTC---CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC-TGGCAATACT
* * *
179540 GATCGATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTC-T
190 GATCCACCGAATGATGAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT
*
179604 TCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCACTGCTAATCAATCGAATGATG
255 TC-TTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCACTGCTAATCAATCGAATGATG
179669 AATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGT
319 AATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGT
* * * *
179734 TATTCTCATTATGAACTCGACCTGGTAATGCTGATCTATCGAATGATGAATTCAAGCAAAAAGTT
384 TATTCTCATTATGAACTCGACCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAAGTT
179799 GAA
449 GAA
* * *
179802 CAAGTTCTTCTTATTAT---CTTCTTCTTCTTCTTTAGATGAGTTCTTCTTATTATGAAC
1 CAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAAC
179859 TCTATTTGGC
Statistics
Matches: 463, Mismatches: 40, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
450 29 0.06
451 121 0.26
452 14 0.03
453 5 0.01
454 233 0.50
455 60 0.13
456 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (451 bp):
CAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACACCTT
CTGGAAATGTTGATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAGCTCTTCTCATTATG
AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGCAATACTGATCCA
CCGAATGATGAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCT
TCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCACTGCTAATCAATCGAATGATGAATTCAA
GCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTC
ATTATGAACTCGACCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAA
Found at i:180323 original size:22 final size:22
Alignment explanation
Indices: 180298--180352 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
180288 GATAAAGCTT
* *
180298 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATATA
* *
180320 TCATCTTTAAAAAGGGAATATA
1 TCATCTTTGAAAAGAGAATATA
180342 TCATCTTTGAA
1 TCATCTTTGAA
180353 GAGTATAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATATA
Found at i:183075 original size:114 final size:114
Alignment explanation
Indices: 182875--183094 Score: 377
Period size: 114 Copynumber: 1.9 Consensus size: 114
182865 TCACAGTTCA
* * ** *
182875 TCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAGAACAC
1 TCTTTCAAATCCAATGATTGATTCTGGGGTTAATACCAAACCAGATCAGATAACTCAAAGAACAC
182940 TTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAATTCG
66 TTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAATTCG
* *
182989 TCTTTCAAATCTAATGATTGATTTTGGGGTTAATACCAAACCAGATCAGATAACTCAAAGAACAC
1 TCTTTCAAATCCAATGATTGATTCTGGGGTTAATACCAAACCAGATCAGATAACTCAAAGAACAC
183054 TTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAG
66 TTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAG
183095 AACGTGGCAC
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 99 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (114 bp):
TCTTTCAAATCCAATGATTGATTCTGGGGTTAATACCAAACCAGATCAGATAACTCAAAGAACAC
TTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAATTCG
Found at i:185359 original size:15 final size:15
Alignment explanation
Indices: 185336--185365 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
185326 CTTGATTCAA
185336 TTTTCCTTTTTTTTT
1 TTTTCCTTTTTTTTT
*
185351 TTTTTCTTTTTTTTT
1 TTTTCCTTTTTTTTT
185366 CTTCTTTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTCCTTTTTTTTT
Found at i:185360 original size:13 final size:13
Alignment explanation
Indices: 185344--185374 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
185334 AATTTTCCTT
*
185344 TTTTTTTTTTTTC
1 TTTTTTTTTCTTC
185357 TTTTTTTTTCTTC
1 TTTTTTTTTCTTC
185370 TTTTT
1 TTTTT
185375 GCTGGATGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTCTTC
Found at i:185366 original size:10 final size:10
Alignment explanation
Indices: 185342--185374 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
185332 TCAATTTTCC
185342 TTTTT-TTTT
1 TTTTTCTTTT
185351 TTTTTCTTTT
1 TTTTTCTTTT
185361 TTTTTCTTCTT
1 TTTTTCTT-TT
185372 TTT
1 TTT
185375 GCTGGATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.23
10 12 0.55
11 5 0.23
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:185674 original size:2 final size:2
Alignment explanation
Indices: 185667--185741 Score: 141
Period size: 2 Copynumber: 37.5 Consensus size: 2
185657 ACAACAAAGG
*
185667 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
185709 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
185742 AATGGATAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:187387 original size:27 final size:27
Alignment explanation
Indices: 187357--187412 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
187347 GTAATTATGT
187357 AAAAATGAAAATGTAAATACAAACGTA
1 AAAAATGAAAATGTAAATACAAACGTA
* * *
187384 AAAAATGCAAATGTAAATGCAAATGTA
1 AAAAATGAAAATGTAAATACAAACGTA
187411 AA
1 AA
187413 TATGTGAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.61, C:0.07, G:0.12, T:0.20
Consensus pattern (27 bp):
AAAAATGAAAATGTAAATACAAACGTA
Found at i:187401 original size:12 final size:12
Alignment explanation
Indices: 187386--187413 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
187376 CAAACGTAAA
187386 AAATGCAAATGT
1 AAATGCAAATGT
187398 AAATGCAAATGT
1 AAATGCAAATGT
187410 AAAT
1 AAAT
187414 ATGTGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (12 bp):
AAATGCAAATGT
Found at i:187506 original size:7 final size:7
Alignment explanation
Indices: 187472--187513 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
187462 ATAAAAGTAT
187472 AAATGCA
1 AAATGCA
* *
187479 CAATGAA
1 AAATGCA
187486 AAATGCA
1 AAATGCA
187493 AAGATGCA
1 AA-ATGCA
187501 AAATGC-
1 AAATGCA
187507 AAATGCA
1 AAATGCA
187514 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:191237 original size:3 final size:3
Alignment explanation
Indices: 191223--191292 Score: 106
Period size: 3 Copynumber: 23.0 Consensus size: 3
191213 TTTGGGCCTG
*
191223 TAA TATA TAA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
191269 TAAA TAA TAA TAA TAA TAA -AA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA
191293 AAAAACCAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
2 2 0.03
3 54 0.87
4 6 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:193052 original size:108 final size:108
Alignment explanation
Indices: 192928--193336 Score: 320
Period size: 108 Copynumber: 3.7 Consensus size: 108
192918 TTTTTAAAGT
* * *
192928 TGATGGGGCCTTAGAAATCCGATAATAACAAAATATGTTAATTATTTAATTTGTTATCAGTATTA
1 TGATGGAGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAGTATTA
192993 TCAACATATTAGGTAACGCCAAAAATGTTGCTAAAGTTTAAGC
66 TCAACATATTAGGTAACGCCAAAAATGTTGCTAAAGTTTAAGC
* * * *** * ** ** **
193036 TGATGGAGCCTTAGAAATCTGACGATAACATAATCCATTAATTCCTCGAA-ACATTATCAACCAT
1 TGATGGAGCCTTAGAAATCCGACAATAACAAAATATGTTAATT-ATTTAATTTATTATC-AGTAT
* * * * * * *
193100 AAT-AACATATTAGGTAGCGCTTATATAACGTAATAGGTAGCACATTTTTAAAGC
64 TATCAACATATTAGGTAACGC-CA-AAAATGT--T-GCTA--A-A-GTTT-AAGC
* * * *
193154 TGATGGGGTCTTAGAAATCTGACGATAACAAAATATGTTAATTATTTAATTTATTATCAGTATTA
1 TGATGGAGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAGTATTA
** * * *
193219 TCAACATATTAGGTAAAACCTAAAATGTTACCAAAGTTTAAGC
66 TCAACATATTAGGTAACGCCAAAAATGTTGCTAAAGTTTAAGC
* * * * ** * * *
193262 TGAT-GATCCTTAGAAATCCGGCAGTAACATAATCGGTTAATTACTTGATTTGTTATCAGTATTA
1 TGATGGAGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAGTATTA
193326 TCAACATATTA
66 TCAACATATTA
193337 CAGTGTACAT
Statistics
Matches: 226, Mismatches: 61, Indels: 29
0.72 0.19 0.09
Matches are distributed among these distances:
107 58 0.26
108 64 0.28
109 12 0.05
110 6 0.03
111 1 0.00
112 1 0.00
113 4 0.02
114 1 0.00
115 1 0.00
116 6 0.03
117 11 0.05
118 61 0.27
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (108 bp):
TGATGGAGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAGTATTA
TCAACATATTAGGTAACGCCAAAAATGTTGCTAAAGTTTAAGC
Found at i:193229 original size:226 final size:225
Alignment explanation
Indices: 192858--193279 Score: 664
Period size: 226 Copynumber: 1.9 Consensus size: 225
192848 TAATTACTGC
* * * * * *
192858 AAACATTATTAATCATAATAATATATTAGGTAACGCTTATGTAACGTAATAGGTAGCGCCTTTTT
1 AAACATTATCAACCATAATAACATATTAGGTAACGCTTATATAACGTAATAGGTAGCACATTTTT
* * *
192923 AAAGTTGATGGGGCCTTAGAAATCCGATAATAACAAAATATGTTAATTATTTAATTTGTTATCAG
66 AAAGCTGATGGGGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAG
** * *
192988 TATTATCAACATATTAGGTAACGCCAAAAATGTTGCTAAAGTTTAAGCTGATGGAGCCTTAGAAA
131 TATTATCAACATATTAGGTAAAACCAAAAATGTTACCAAAGTTTAAGCTGAT-GAGCCTTAGAAA
193053 TCTGACGATAACATAATCCATTAATTCCTCG
195 TCTGACGATAACATAATCCATTAATTCCTCG
*
193084 AAACATTATCAACCATAATAACATATTAGGTAGCGCTTATATAACGTAATAGGTAGCACATTTTT
1 AAACATTATCAACCATAATAACATATTAGGTAACGCTTATATAACGTAATAGGTAGCACATTTTT
* * *
193149 AAAGCTGATGGGGTCTTAGAAATCTGACGATAACAAAATATGTTAATTATTTAATTTATTATCAG
66 AAAGCTGATGGGGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAG
* *
193214 TATTATCAACATATTAGGTAAAACCTAAAATGTTACCAAAGTTTAAGCTGATGATCCTTAGAAAT
131 TATTATCAACATATTAGGTAAAACCAAAAATGTTACCAAAGTTTAAGCTGATGAGCCTTAGAAAT
193279 C
196 C
193280 CGGCAGTAAC
Statistics
Matches: 177, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
225 13 0.07
226 164 0.93
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (225 bp):
AAACATTATCAACCATAATAACATATTAGGTAACGCTTATATAACGTAATAGGTAGCACATTTTT
AAAGCTGATGGGGCCTTAGAAATCCGACAATAACAAAATATGTTAATTATTTAATTTATTATCAG
TATTATCAACATATTAGGTAAAACCAAAAATGTTACCAAAGTTTAAGCTGATGAGCCTTAGAAAT
CTGACGATAACATAATCCATTAATTCCTCG
Found at i:193851 original size:198 final size:197
Alignment explanation
Indices: 193490--193940 Score: 604
Period size: 198 Copynumber: 2.3 Consensus size: 197
193480 GTTTAGATAG
* * *
193490 AAAA-TATCGATACCTATACAAAAAGTATCGAAACTTTATGTTTACGCCTATTATCATTAAACCG
1 AAAAGTATCGATA-CTATAC-AAAAGTATCGATATTTTATGTTTACACCTATTATCATTAAACCG
* * *
193554 ATAGATTTTGATCGTTTACATTGTAAATTTACCTATTACTTTAAAGTAATCGGTTTCGAAATTAT
64 ATAGATTTTGATCGTTTACATTGTAAATTTACCTATAACTTTAAAGTAATCGATTTCAAAATTAT
* * ** *
193619 AAGTATCGATACTTATGATACGTATATCGATACTTTCTGCGTGCATGTTGTTTGAGAAGCATACT
129 AAGTATCAATACTTATGATACATATATCGATACTTTCTGCGTGCAAATTG-TTGAGAAACATACT
193684 GGACT
193 GGACT
*
193689 AAAAGTATCGATACT-TACACAAAGTATCGATATTTTATGTTTACACCTATTATCATTAAATCGA
1 AAAAGTATCGATACTATACA-AAAGTATCGATATTTTATGTTTACACCTATTATCATTAAACCGA
* *
193753 TAGATTTTTA-CTGTTTACATTGTAAATTTTCCTATAACTTTAAAGTAATCGATTTCAAAATTAT
65 TAGATTTTGATC-GTTTACATTGTAAATTTACCTATAACTTTAAAGTAATCGATTTCAAAATTAT
* * * * * *
193817 AAGTATCAATACTTGTTATACATGTATTGATACTTTGTGTGTGCAAATTGTTGAGAAACATACTG
129 AAGTATCAATACTTATGATACATATATCGATACTTTCTGCGTGCAAATTGTTGAGAAACATACTG
193882 GACT
194 GACT
* *
193886 AAAAGAATCGATACATATACAAAGAGTATTGAT-TCTTTATGTTTACACCTATTAT
1 AAAAGTATCGATAC-TATACAAA-AGTATCGATAT-TTTATGTTTACACCTATTAT
193941 TAGGTACCGA
Statistics
Matches: 223, Mismatches: 22, Indels: 14
0.86 0.08 0.05
Matches are distributed among these distances:
197 33 0.15
198 144 0.65
199 38 0.17
200 8 0.04
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (197 bp):
AAAAGTATCGATACTATACAAAAGTATCGATATTTTATGTTTACACCTATTATCATTAAACCGAT
AGATTTTGATCGTTTACATTGTAAATTTACCTATAACTTTAAAGTAATCGATTTCAAAATTATAA
GTATCAATACTTATGATACATATATCGATACTTTCTGCGTGCAAATTGTTGAGAAACATACTGGA
CT
Found at i:194606 original size:15 final size:15
Alignment explanation
Indices: 194583--194617 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
194573 ATTACTTTAA
*
194583 ATCGGTACTTGGAAT
1 ATCGATACTTGGAAT
194598 ATCGATACTTGGAAT
1 ATCGATACTTGGAAT
*
194613 TTCGA
1 ATCGA
194618 AACCTATTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (15 bp):
ATCGATACTTGGAAT
Found at i:195570 original size:195 final size:194
Alignment explanation
Indices: 195213--195575 Score: 464
Period size: 195 Copynumber: 1.9 Consensus size: 194
195203 TTCATTTTTT
* * * *
195213 TTTTCAATTCCTAAAGTATCGATACTATGATACATATACTTATAAAAGTATCGATACTTTTAACA
1 TTTTAAATTCCTAAAGTACCGATACTATGATACATATACTTATAAAAATATCGATACTTTCAACA
* * * * * * *
195278 TATCCGATAGTACTTTACCGGTTTTGTCATATTGAAACCGATTTTTTCAAATTTTAACATGTTAT
66 TATCCGATACTACTTTAACGGTTTTGTCAAACTGAAACCGATTTTGTCAAACTTCAACATGTTAT
*
195343 ATTGTCATGTATCGATACATGTGTATAAGGTATCGATATTTTATAGGCGCTATTATTGCAATTA
131 ATTGTCATGTATCGATACATATGTATAAGGTATCGATATTTTATAGGCGCTATTATTGCAATTA
* * *
195407 TTTTAAATTCCTAAAGTACCGATACTTTGGTGCATATACTTATAAAAATATCGATACAAATTTCA
1 TTTTAAATTCCTAAAGTACCGATACTATGATACATATACTTATAAAAATATCGATAC---TTTCA
* * * *
195472 ACCAT-TCTGGT-CT-CTTTAACGGTTTTGTCAAACTG-AACCGGTTTTGTCAAAACTTCAACCT
63 A-CATATCCGATACTACTTTAACGGTTTTGTCAAACTGAAACCGATTTTGTC-AAACTTCAACAT
* *
195533 GTTATATTGTCATGTATTGATACATATGTGTAAGGTATCGATA
126 GTTATATTGTCATGTATCGATACATATGTATAAGGTATCGATA
195576 CTTTCGCGAC
Statistics
Matches: 143, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
194 62 0.43
195 68 0.48
196 1 0.01
197 9 0.06
198 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (194 bp):
TTTTAAATTCCTAAAGTACCGATACTATGATACATATACTTATAAAAATATCGATACTTTCAACA
TATCCGATACTACTTTAACGGTTTTGTCAAACTGAAACCGATTTTGTCAAACTTCAACATGTTAT
ATTGTCATGTATCGATACATATGTATAAGGTATCGATATTTTATAGGCGCTATTATTGCAATTA
Done.