genome.fa.s6706.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006706.1 Hibiscus syriacus cultivar Beakdansim tig00016709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51675

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555--595	18	2.3	18	95	0	73	41	9	26	21	1.84
5256--5297	21	2.0	21	90	0	66	26	23	14	35	1.93
13052--13094	16	2.6	15	82	17	50	46	9	18	25	1.79
13143--13188	23	2.0	23	82	0	56	34	8	19	36	1.83
13152--13199	23	2.1	23	84	0	60	37	6	18	37	1.76
13115--13278	85	1.9	87	88	2	251	42	11	10	34	1.76
13278--14000	200	3.6	197	82	6	778	30	15	13	39	1.87
16541--16903	200	1.8	198	86	3	514	31	15	14	39	1.87
16645--17136	251	2.0	251	87	2	711	31	16	14	38	1.88
19907--20803	201	4.6	201	87	4	1268	32	16	14	36	1.89
20461--20825	180	2.0	180	92	2	608	30	17	15	36	1.91
21696--21720	4	6.2	4	100	0	50	48	28	0	24	1.52
22912--22980	33	2.1	33	91	0	111	23	44	0	31	1.53
23011--23052	21	2.0	21	90	0	66	16	30	11	40	1.85
23137--23199	15	4.2	15	97	0	117	12	57	6	23	1.58
25343--25388	20	2.3	19	78	10	56	21	17	8	52	1.71
25527--25581	20	2.8	20	94	0	92	20	20	14	45	1.85
25345--25722	202	1.9	202	93	0	648	28	17	13	41	1.87
28379--28426	18	2.7	18	100	0	96	27	39	4	29	1.75
28957--29005	24	2.1	23	88	3	71	44	0	0	55	0.99
28953--29001	15	3.0	17	77	14	50	44	0	0	55	0.99
29414--29438	7	3.6	7	100	0	50	76	0	12	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30435--30498	5	12.0	5	80	12	74	18	53	21	6	1.67
30442--30503	17	4.1	17	71	26	66	17	46	24	11	1.81
30435--30498	27	2.4	27	100	0	128	18	53	21	6	1.67
32710--32739	13	2.3	13	100	0	60	20	10	40	30	1.85
33096--33157	18	3.4	18	72	24	58	50	29	14	6	1.68
38166--38208	19	2.3	19	91	0	68	20	25	27	25	1.99
44136--44182	24	2.0	24	100	0	94	29	19	17	34	1.94
46986--47042	22	2.7	21	83	8	71	57	0	1	40	1.09
48213--48256	20	2.2	20	87	0	61	27	22	25	25	2.00
48242--48284	20	2.2	20	86	0	59	32	32	18	16	1.93
50215--50293	33	2.4	33	85	2	106	17	27	29	25	1.98

Tables:   1

The End!