genome.fa.s6707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006707.1 Hibiscus syriacus cultivar Beakdansim tig00016715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101821

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10437--10560	61	2.0	61	95	0	221	42	16	12	28	1.84
19936--19972	19	1.9	19	89	10	58	54	21	0	24	1.45
20168--20202	17	2.1	17	100	0	70	28	11	34	25	1.91
28315--28683	123	3.0	123	100	0	738	41	14	13	30	1.84
42425--42455	15	2.0	16	93	6	55	38	3	38	19	1.68
45344--45382	18	2.2	18	86	9	53	38	2	2	56	1.27
47208--47262	25	2.1	27	86	6	78	43	7	10	38	1.68
48008--48121	35	3.3	35	87	0	165	42	20	0	35	1.58
48115--48189	35	2.1	35	90	0	114	36	1	18	44	1.59
48166--48237	24	3.0	24	66	28	62	37	5	13	43	1.68
49602--49660	30	2.0	30	83	6	75	44	8	3	44	1.51
51936--51965	15	1.9	16	93	6	53	20	36	3	40	1.69
53428--53471	22	2.0	22	95	0	79	20	9	22	47	1.78
64980--65036	30	1.9	30	88	0	87	24	57	10	7	1.56
65028--65089	24	2.6	24	84	0	79	24	59	3	12	1.48
65283--65338	24	2.3	24	81	0	67	25	60	1	12	1.42
77068--77111	23	2.0	20	87	12	61	59	6	2	31	1.36
79502--79542	21	1.9	21	85	5	55	34	7	2	56	1.40
79495--79583	15	6.1	15	73	12	78	42	3	1	52	1.25
79546--79587	13	3.1	13	80	12	57	47	0	0	52	1.00
79534--79587	28	1.9	28	100	0	108	46	0	0	53	1.00
81167--81218	14	3.5	14	80	14	68	53	28	13	3	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85838--85863	13	2.0	13	100	0	52	38	7	23	30	1.83

Tables:   1

The End!