genome.fa.s6708.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006708.1 Hibiscus syriacus cultivar Beakdansim tig00016717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104053

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060--1085	11	2.4	11	100	0	52	46	0	0	53	1.00
1703--1736	12	2.8	12	100	0	68	17	47	0	35	1.48
7051--7091	16	2.7	15	82	17	57	53	0	4	41	1.22
9553--9614	31	2.0	31	96	0	115	32	11	12	43	1.79
9701--9802	42	2.5	41	89	6	156	49	20	6	23	1.73
12480--12504	13	1.9	13	100	0	50	76	0	0	24	0.80
12974--13012	11	3.6	11	86	13	55	84	0	0	15	0.62
12973--13020	19	2.5	19	81	18	64	81	0	2	16	0.79
24381--24417	15	2.5	15	100	0	74	70	10	0	18	1.16
25904--25955	20	2.8	18	75	19	54	55	0	7	36	1.29
29616--29688	14	5.2	14	73	12	60	28	0	23	47	1.52
29648--29707	21	2.9	21	73	7	52	23	0	26	50	1.50
29643--29707	14	4.7	14	79	5	62	24	0	24	50	1.49
29872--29904	2	16.5	2	100	0	66	48	0	0	51	1.00
29955--30060	55	1.9	55	86	0	149	24	6	23	45	1.77
34830--34857	2	14.0	2	100	0	56	50	0	0	50	1.00
35156--35245	30	3.2	29	80	7	96	53	0	3	43	1.17
37995--38040	6	7.7	6	87	0	56	47	6	2	43	1.41
37995--38040	4	11.5	4	85	0	56	47	6	2	43	1.41
37995--38040	10	4.6	10	86	0	56	47	6	2	43	1.41
41218--41308	31	2.9	31	93	1	146	15	19	10	53	1.71
43947--43993	24	2.0	24	82	0	58	42	2	2	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50628--50766	21	6.7	21	79	4	120	22	23	15	39	1.91
50631--50767	42	3.3	42	89	1	186	23	22	14	39	1.91
51636--51689	24	2.2	24	93	0	90	20	18	20	40	1.91
53917--53989	20	3.6	20	70	17	69	32	24	19	23	1.97
53956--54010	19	2.8	20	83	2	58	40	20	20	20	1.92
53983--54107	33	3.8	33	92	0	196	47	16	23	13	1.81
53963--54074	19	6.4	19	68	20	82	44	17	22	15	1.86
54015--54113	19	5.7	19	64	22	65	46	17	24	12	1.81
54119--54229	33	3.4	33	91	5	181	11	21	20	45	1.83
54335--54369	13	2.6	13	86	4	52	42	22	0	34	1.54
54326--54400	39	1.9	39	81	5	89	49	16	1	33	1.54
55657--55723	21	3.2	21	68	4	55	19	20	35	23	1.95
55864--55931	21	3.2	21	68	2	55	19	19	38	23	1.93
56299--56399	19	5.9	18	68	22	74	44	20	24	9	1.82
56302--56396	33	2.9	33	91	0	154	44	21	24	10	1.83
56426--56509	33	2.5	33	90	0	132	8	19	22	50	1.74
56471--56532	20	3.2	20	81	4	81	11	20	16	51	1.74
56625--57089	94	5.1	94	92	3	752	46	19	12	21	1.82
58686--58786	20	5.2	20	79	7	109	47	17	21	12	1.81
58684--58815	19	7.1	19	75	11	130	46	18	22	12	1.82
58822--58932	20	5.8	20	78	13	101	10	19	19	49	1.77
60007--60084	25	3.2	25	66	23	74	25	14	11	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60011--60087	24	3.2	24	66	23	70	24	12	11	50	1.74
60004--60102	49	2.0	49	100	0	198	24	16	10	49	1.76
70160--70385	58	3.9	58	90	1	310	26	17	23	31	1.97
70166--70388	115	1.9	114	88	0	338	27	18	22	31	1.97
70372--70409	19	2.0	19	100	0	76	31	31	21	15	1.94
71775--71801	4	6.8	4	100	0	54	22	0	0	77	0.76
77927--77963	19	1.9	19	88	0	56	29	5	13	51	1.63
78110--78174	26	2.6	25	92	4	112	53	6	10	29	1.59
83141--83168	12	2.3	12	100	0	56	0	25	14	60	1.34
84269--84354	15	5.7	15	85	9	122	23	39	12	24	1.89
84898--85039	70	2.0	70	98	0	275	33	24	26	15	1.95
90085--90376	126	2.3	126	85	4	383	29	12	23	34	1.91

Tables:   1

The End!