Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006709.1 Hibiscus syriacus cultivar Beakdansim tig00016723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51896
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:3877 original size:30 final size:30
Alignment explanation
Indices: 3821--3879 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
3811 GATTTATTTA
*
3821 GTGACCAAATTATAAATTTGGTAAAGTTTG
1 GTGACCAAATTATAAATTTGGAAAAGTTTG
3851 GTGACCAAAGTT-TAAACTTT-GAAAAGTTT
1 GTGACCAAA-TTATAAA-TTTGGAAAAGTTT
3880 AGGGACTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.36
Consensus pattern (30 bp):
GTGACCAAATTATAAATTTGGAAAAGTTTG
Found at i:5122 original size:24 final size:24
Alignment explanation
Indices: 5090--5157 Score: 118
Period size: 24 Copynumber: 2.8 Consensus size: 24
5080 GACATAGTAC
*
5090 ATAGATGTTTTATACGTCATGTAA
1 ATAGATGTTTTATACATCATGTAA
*
5114 ATAGATGTTTTATACATCATGTAC
1 ATAGATGTTTTATACATCATGTAA
5138 ATAGATGTTTTATACATCAT
1 ATAGATGTTTTATACATCAT
5158 CAGGAAGACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (24 bp):
ATAGATGTTTTATACATCATGTAA
Found at i:10389 original size:24 final size:24
Alignment explanation
Indices: 10354--10404 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
10344 TCATTTCAAG
* *
10354 TTGAAGATTCAAGAAACATGTCTT
1 TTGAAGAATCAAGAAACATGACTT
* *
10378 TTGAAGAATCAATAAACGTGACTT
1 TTGAAGAATCAAGAAACATGACTT
10402 TTG
1 TTG
10405 GTGATCCACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (24 bp):
TTGAAGAATCAAGAAACATGACTT
Found at i:12372 original size:20 final size:20
Alignment explanation
Indices: 12343--12396 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
12333 AACTTCATTT
* *
12343 AAATCTTGTATTTTCATTAA
1 AAATCATGTATTTTCATCAA
12363 AAATCATGTATTTTCATCAA
1 AAATCATGTATTTTCATCAA
12383 AAATCATGTATTTT
1 AAATCATGTATTTT
12397 TAAAGGGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (20 bp):
AAATCATGTATTTTCATCAA
Found at i:16605 original size:50 final size:50
Alignment explanation
Indices: 16551--16694 Score: 227
Period size: 50 Copynumber: 2.9 Consensus size: 50
16541 GCACATGAAG
* * *
16551 ACTTTGGCTCCAAGATGAACCAACACATCATCATTCGGCCAAGGAAGTTA
1 ACTTTGGCACCAAGATGAACCAACATATCACCATTCGGCCAAGGAAGTTA
* *
16601 ACTTTGGCACCAAGATGAACAAACATATCACCATTCGGCCAATGAAGTTA
1 ACTTTGGCACCAAGATGAACCAACATATCACCATTCGGCCAAGGAAGTTA
16651 ACTTTGGCACCAAGATGAA-CAAGCATATCACCATTCGGCCAAGG
1 ACTTTGGCACCAAGATGAACCAA-CATATCACCATTCGGCCAAGG
16695 GAGATGTATC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
49 2 0.02
50 84 0.98
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (50 bp):
ACTTTGGCACCAAGATGAACCAACATATCACCATTCGGCCAAGGAAGTTA
Found at i:19569 original size:35 final size:35
Alignment explanation
Indices: 19529--19612 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
19519 GTTAAGGGAT
*
19529 GGTGATGATATAGGCATGAAATGATGATAGAAGAA
1 GGTGATGATATAGGCATGAAATGATAATAGAAGAA
* * * *
19564 GGTGATGATATAGGCGTGAAATGGTAATGGAAGAT
1 GGTGATGATATAGGCATGAAATGATAATAGAAGAA
19599 GAG-GATGATATAGG
1 G-GTGATGATATAGG
19613 TCTTAAATTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 42 0.98
36 1 0.02
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.24
Consensus pattern (35 bp):
GGTGATGATATAGGCATGAAATGATAATAGAAGAA
Found at i:19629 original size:35 final size:35
Alignment explanation
Indices: 19532--19640 Score: 105
Period size: 35 Copynumber: 3.1 Consensus size: 35
19522 AAGGGATGGT
* * * * *
19532 GATGATATAGGCATGAAATGATGATAGAAGAAG-G
1 GATGATATAGGCGTGAAATGGTAATGGAAGATGAG
19566 TGATGATATAGGCGTGAAATGGTAATGGAAGATGAG
1 -GATGATATAGGCGTGAAATGGTAATGGAAGATGAG
* * * *
19602 GATGATATAGGTC-TTAAATTGTGATGGAAGATGGG
1 GATGATATAGG-CGTGAAATGGTAATGGAAGATGAG
19637 GATG
1 GATG
19641 GAAAGATAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
35 61 0.97
36 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.35, T:0.26
Consensus pattern (35 bp):
GATGATATAGGCGTGAAATGGTAATGGAAGATGAG
Found at i:20431 original size:23 final size:23
Alignment explanation
Indices: 20386--20431 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
20376 TTATACCTAT
*
20386 AGATACTTATTTCATATGTTATA
1 AGATACTTATTTCATATGATATA
*
20409 AGATAGTTATTTTCATAT-ATATA
1 AGATACTTA-TTTCATATGATATA
20432 TATTATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (23 bp):
AGATACTTATTTCATATGATATA
Found at i:22073 original size:26 final size:25
Alignment explanation
Indices: 22043--22119 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
22033 ATTGGAGTGC
*
22043 AAAAAGAAAGAAAAGATAAAAAGAA
1 AAAAAAAAAGAAAAGATAAAAAGAA
*
22068 AAAAAAATCAGAAAAGA-AGAAAAGAA
1 AAAAAAA-AAGAAAAGATA-AAAAGAA
* *
22094 AAAGAAAAAAGAGAAGTTCAAAAAGA
1 AAA-AAAAAAGAAAAGAT-AAAAAGA
22120 GAAAGCAAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
25 7 0.17
26 24 0.57
27 10 0.24
28 1 0.02
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.05
Consensus pattern (25 bp):
AAAAAAAAAGAAAAGATAAAAAGAA
Found at i:22098 original size:14 final size:13
Alignment explanation
Indices: 22049--22105 Score: 57
Period size: 13 Copynumber: 4.4 Consensus size: 13
22039 GTGCAAAAAG
22049 AAAG-AAAAGATAA
1 AAAGAAAAAGA-AA
22062 AAAGAAAAA-AAA
1 AAAGAAAAAGAAA
*
22074 ATCAG-AAAAGAAGA
1 A-AAGAAAAAGAA-A
22088 AAAGAAAAAGAAA
1 AAAGAAAAAGAAA
22101 AAAGA
1 AAAGA
22106 GAAGTTCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 7 0.19
13 17 0.46
14 13 0.35
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.04
Consensus pattern (13 bp):
AAAGAAAAAGAAA
Found at i:25040 original size:23 final size:23
Alignment explanation
Indices: 24995--25040 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24985 TTATACCTAT
*
24995 AGATACTTATTTCATATGTTATA
1 AGATACTTATTTCATATGATATA
*
25018 AGATAGTTATTTTCATAT-ATATA
1 AGATACTTA-TTTCATATGATATA
25041 TATTATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (23 bp):
AGATACTTATTTCATATGATATA
Found at i:26670 original size:17 final size:18
Alignment explanation
Indices: 26649--26724 Score: 72
Period size: 17 Copynumber: 4.4 Consensus size: 18
26639 AATTGGAGTG
26649 CAAAAAGAAAGAAAAGAT
1 CAAAAAGAAAGAAAAGAT
26667 -AAAAAGAAA-AAAA-AT
1 CAAAAAGAAAGAAAAGAT
*
26682 CAAAAAAAAAGAAAAGA-
1 CAAAAAGAAAGAAAAGAT
* * *
26699 -AAAGAAAAAAGAGAAGTT
1 CAAA-AAGAAAGAAAAGAT
26717 CAAAAAGA
1 CAAAAAGA
26725 GAAAGCAAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
15 2 0.04
16 15 0.31
17 24 0.50
18 4 0.08
19 3 0.06
ACGTcount: A:0.76, C:0.04, G:0.14, T:0.05
Consensus pattern (18 bp):
CAAAAAGAAAGAAAAGAT
Found at i:26680 original size:10 final size:10
Alignment explanation
Indices: 26667--26708 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
26657 AAGAAAAGAT
26667 AAAAAGAAAA
1 AAAAAGAAAA
**
26677 AAAATCAAAA
1 AAAAAGAAAA
26687 AAAAAGAAAA
1 AAAAAGAAAA
*
26697 GAAAAGAAAA
1 AAAAAGAAAA
26707 AA
1 AA
26709 GAGAAGTTCA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.86, C:0.02, G:0.10, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:29646 original size:23 final size:23
Alignment explanation
Indices: 29601--29646 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
29591 TTATACCTAT
*
29601 AGATACTTATTTCATATGTTATA
1 AGATACTTATTTCATATGATATA
*
29624 AGATAGTTATTTTCATAT-ATATA
1 AGATACTTA-TTTCATATGATATA
29647 TATATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (23 bp):
AGATACTTATTTCATATGATATA
Found at i:33339 original size:19 final size:20
Alignment explanation
Indices: 33292--33342 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
33282 GAAACCCCTT
**
33292 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
33312 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
33331 TGAAGATACATG
1 TGAAAATACATG
33343 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:35407 original size:35 final size:35
Alignment explanation
Indices: 35362--35440 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 35
35352 TGGTTAAGGG
*
35362 ATGGTGATGATATAGGCGTGAAATGGTGATGGAAA
1 ATGGTGATGATATAGGCATGAAATGGTGATGGAAA
* * *
35397 ATTGTGATGATATAGGTATGAAATGGTGATGGAAG
1 ATGGTGATGATATAGGCATGAAATGGTGATGGAAA
35432 ATGGTGATG
1 ATGGTGATG
35441 GACAGATAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.33, C:0.01, G:0.37, T:0.29
Consensus pattern (35 bp):
ATGGTGATGATATAGGCATGAAATGGTGATGGAAA
Found at i:35437 original size:13 final size:14
Alignment explanation
Indices: 35419--35447 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
35409 TAGGTATGAA
35419 ATGGTGATGGA-AG
1 ATGGTGATGGACAG
35432 ATGGTGATGGACAG
1 ATGGTGATGGACAG
35446 AT
1 AT
35448 AGTATCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.31, C:0.03, G:0.41, T:0.24
Consensus pattern (14 bp):
ATGGTGATGGACAG
Found at i:39901 original size:16 final size:16
Alignment explanation
Indices: 39880--39916 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
39870 ATAAGAAAAG
*
39880 ATGAAAGAATAACTAA
1 ATGAAAGAATAACAAA
*
39896 ATGAAATAATAACAAA
1 ATGAAAGAATAACAAA
39912 ATGAA
1 ATGAA
39917 GATAACTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.65, C:0.05, G:0.11, T:0.19
Consensus pattern (16 bp):
ATGAAAGAATAACAAA
Found at i:43586 original size:17 final size:17
Alignment explanation
Indices: 43564--43596 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
43554 TGGCTAAAAG
43564 AAATGGTTAGGGTAAAT
1 AAATGGTTAGGGTAAAT
*
43581 AAATGGTTATGGTAAA
1 AAATGGTTAGGGTAAA
43597 AGTAGGATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (17 bp):
AAATGGTTAGGGTAAAT
Found at i:47378 original size:901 final size:902
Alignment explanation
Indices: 45638--50259 Score: 4125
Period size: 901 Copynumber: 5.0 Consensus size: 902
45628 AACTTACAAC
* *
45638 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGTCTTCTTGTGCGTCTTGGTTTCC
1 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
* *
45703 TTTAATGAAAAGACTCT-CTTGGTTCATGTCTCTAAGAACATCAATAGTTGTATTGTTTTGAATC
66 TTTAATGAAAAGACTCTCCTT-GTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATC
* *
45767 AACACATCTCTTGGTTCAACGATTTCATCCTTT-GCTAAGGTCAGGTATTTTGGTGTACCCTGCA
130 AACACATCTCTTGGTTCAACGATTTCATCCTTTAG-TAAGGTCAGGTATTTTAGTGTATCCTGCA
* * * * *
45831 ATAGAAGAAATGAAAATTCATCTCCAAAAAGGGCTTCTCGAATCAAGCCTTTGTTCGAATAGGCA
194 ATACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATCAAGCCTTTGTTCGAATAGGCA
* * *
45896 CTTGCAATGTTCCTTTTGGTGATGGAACTTATTTCTCCTTGACCCGGCATATCATGTTCTTTAAA
259 CTTGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAA
*
45961 GAAAATATGTTAACTTTTCATCTCCACTCCTTGAATCACCATGATGGTTTGTGAAGAGTCTTAAC
324 GAAAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAAC
* * * *
46026 CTTTGAAATTTCTTCAAATGCCTTAGTTCTATGAACCAATGAATCTCACAATGAGAATGGAATTT
389 CATTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTT
* * * *
46091 GACATCAACGTTTGGTAGGATAATACCATATATATAAATTGAATTCCTGCAAATTAAATCAAAGT
454 GACATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGT
* * * ** * *
46156 AAAAATATAAAAGGTATAAA-AAAACAAATGGAAATATCAAACCAATGTGGATGTTTAATGGGAA
519 TAAAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAG
*
46220 TTGGCTATTGAATTCTTTTCAAGATTGGCAATGCACTTGGAATGTCAACGAACAAAACTCTTGGC
584 TTGGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGG-ATGTCAACGAACAAAACTCTTGGC
* *
46285 ACTTCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACC-TTCAAAACATCAAGATACATGT
648 ACTTCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATT-AAAACATCAATAGACATGT
* * *
46349 CTTGTGAATCACAAATAGACACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCAATAA
712 CTTGTGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAA
* * *
46414 TTCATGATTCTTGAATCATCTCCTCGAAAAGATACGTCTCTTGGATTATCCTACAAAACAATAGA
777 TTCATGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGA
46479 AAGAATAGATGAAATAGTAAGGTTATTTAAAATATG-TCTTCTTGTACGTCTTGGTTTCCT
842 AAGAATAGATGAAATAGTAAGGTTATTTAAAATATGATCTTCTTGTACGTCTTGGTTTCCT
46539 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
1 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
46604 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
66 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
46669 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
131 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
46734 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATCAAGCCTTTGTTCGAATAGGCACT
196 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATCAAGCCTTTGTTCGAATAGGCACT
*
46799 TGCAATGTTCCTGTTAGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
261 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
46864 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
326 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
46929 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
391 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
*
46994 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAAATAAATAAAAGTTA
456 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
*
47059 AAATATGAAATGTATAAACAAAATGAATTGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
521 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
*
47124 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTAGCACT
586 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
*
47189 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACTTCAATAGACATGTCTTG
651 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATAGACATGTCTTG
* *
47254 TGAATCAAAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTATTCCTCCATAATTCA
716 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAATTCA
*
47319 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGGAAGA
781 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGAAAGA
* * * * * *
47384 ATAGATGAAATAGTAAGATTAGTTAAAATATGTTCTTCATTCT-CCTCTT--TAT-CT
846 ATAGATGAAATAGTAAGGTTATTTAAAATATGATCTTC-TTGTACGTCTTGGTTTCCT
* * * * * ** ** * * *
47438 CCAAATT-CATC-CTTTCAACTCTCTCATTTTC-A-ACTCCA-ACATCTTTTTCATCCAC-TCTT
1 TCAAATTGCAACACTTACTA-TCT-TCCTTCACAAGACTTGATGC--CTTCTT-GT--ACGTCTT
* * * **** * * * * *
47497 TGATT-CTTATCATTCTTA-A-TGT-CTTGTT--TGATTTC-AA-AATGCATTAATTCATTTAAA
59 GGTTTCCTT-TAATGAAAAGACTCTCCTTGTTCAT-ATCTCTAAGAA--CATCAA-T-AGTTATA
** *** * * ** * ** ** ** ** *
47554 CTT-TCTTCCAAGTGTTCTTCTTCAAGTTGCTCCCTCATTG-TTTCAATGTTTTTTTCACAAATG
118 -TTGT-TTTGAA-TCAAC-ACATC-TCTTGGT---TCAACGATTTC-ATCCTTTAGT-A-AGGTC
* ** * * * * ** * * ** *
47617 A-GT-TTGTCTTCTTTCACTTGACTATGAGAAAGTGGCATCAAAGTGATT-TTCTTACCATTATG
172 AGGTATTTTAGTGTATC-C-TG-CAAT-A-CAA-T-AAAT-AAA--AATTCATC-T-CCAAAAAG
* * * * ** * * * *
47679 GG-TGATAGTATATCTATTTGTAAACCCATCGTGGATTGCTCGTCT-GTCGAATTACCATGGTCT
225 GGCTTATTG-A-ATC--------AA-GC--C-T---TTGTTCGAATAGGC-ACTTGCAAT-G--T
* * * * * ** * * ** * * * *
47742 TCCCAAAAGTAT-AT-ATGCAGCATCAATTGGTACAACATCACAAAGAACTTCATCTTGGTATTT
269 T-CC---TGT-TGGTGATGGAAC-T-TATT--T-CTCCTTGAC-GCG-ACAT-ATCATGTTCTTT
* ** *
47805 GCCAAATGAAAACAGGATGAAAACTTGCTTTGTTACTTTTACTTCTCCA-TCACTT-AACCAT--
321 ---AAA-G-AAA-A-TATGTTAAC-T----T-TT-C----A--TCTCCACTC-CTTGAATCATCA
* * * * * * * ** * *
47866 TGA-AGATTGT-ATGGATTC-GAATGC-TT-AGAGGTCTTC-AA-GCC-AAGCTT-T-TTAACCG
365 TGATGGTTTGTGA-AGAGTCTTAA-CCATTGAAATTTCATCAAATGCCTTAG-TTCTATTAACC-
* ***** * * *
47921 TAAGGGTACTAGCAATGTTCGTACAACTTCCTTCGTCGATGATCATGA-AACAAAC-TTT-GT-T
426 --A----A-T-G-AAT-CTC--ACAA-TGAGAACG--GA--AT-TTGACATC-AACGTTTGGTAG
* * * * * * * ** * ***
47982 GTTTACACGATAACGAGTTTGAAAGATGTTTTCTCTTTGGTAATCTTCTAAGATTTGAGTGCCTA
472 GATAATACCAT-A-TA-TATG--AGTTGAATTC-C--T-GTAA--AT-TAA-ATAAAAGT---TA
* * ** * ** * * *
48047 AAGCCTTTTTAATG-ACAAACACTTATCTTGAAGCTGTCTGGAA-ATCAAGC-AATTCTTGTGAC
521 AA--ATATGAAATGTATAAACA---A-AATGAA--TG---GAAATATCAAACTAA----TGTG-G
* * * ****** * ** ** * * * * *
48109 ATGGTTAGT-GAAAAAAAATAAATTAAAACCTTAGCAGCA-CGCTCATAAAAGCCTCACTT-TAT
570 ATGTTTAATGGGAGTTGGCT--ATTGAATTCTTTTCAGGATTG-GC---AATG---CACTTGGAT
** ** * * * * * * * * * * * *
48171 CACTCCGAAGAAAATTCTAGTTGCAC-TCCACTCAC-ACTCGTGTTT-GCAC-TC--GGGGATAA
626 GTCAACGAACAAAACTCT--TGGCACTTCAAGTGACGCCT-TTATTTGGAACTTCAATGGTAT-A
* * * ** * * * *** * * * *
48230 ATTCAGGTT-GATC-TCACCAT-CTCGTTTACCTTTTTCCTCTC---GATTCTC-TCT-TTCGGT
687 A-CCA--TTAAAACATCA--ATAGACATGT--CTTGTGAATCACAAAGAGTCACGCCTATT-GGT
* * * * ** **** * * **
48287 CCTTTTAAA-G-AACTAAC-TCAAGATTGAGCA-AGTTTC-T--TTGTTTG--TGCATCGGCT--
744 TC-TTCAAAGGTTAC-ATCTTTTAG-TCCTCCATA-ATTCATGATT-CTTGAAT-CATCTCCTCG
* * ** * *
48341 AAAAGA-A-ATGGT-TTGGGTATATAAATGGTTATGGTAAA-AGTAGAATAGAA-AGGTTGAGAA
803 AAAAGATACAT-CTCTT-GG-AT-T--AT-G--CTGCAAAACAATAGAA-AGAATA-GATGA-AA
* ** * *** *
48401 AAGGGATAAGGTAGTAAATAAGAAAAGATGAAAGAATAACTAAATGAAATA-GTAACAAAATGAA
856 TA--G-TAAGGT--T--AT--TTAAA-AT--ATG-AT--CTTCTTG---TACGT--C---TTG--
48465 GATAACTTACAAC-
896 G-T---TT-C--CT
*
48478 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGTCTTCTTGTACGTCTTGGTTTCC
1 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
48543 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
66 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
48608 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
131 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
*
48673 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
196 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATCAAGCCTTTGTTCGAATAGGCACT
48738 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
261 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
48803 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
326 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
48868 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
391 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
48933 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
456 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
48998 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
521 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
49063 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
586 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
*
49128 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
651 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATAGACATGTCTTG
*
49193 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCAATAATTCA
716 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAATTCA
* * *
49258 TGATTCTTGAATCATCTCCTCGAAAAGATACGTCTCTTGGATTATCCTACAAAACAATAGAAAGA
781 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGAAAGA
49323 ATAGATGAAATAGTAAGGTTATTTAAAATATG-TCTTCTTGTACGTCTTGGTTTCCT
846 ATAGATGAAATAGTAAGGTTATTTAAAATATGATCTTCTTGTACGTCTTGGTTTCCT
49379 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
1 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
*
49444 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTGTATTGTTTTGAATCA
66 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
*
49509 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTGGTGTATCCTGCAAT
131 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
*
49574 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
196 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATCAAGCCTTTGTTCGAATAGGCACT
49639 TGCAATGTTCCTGTTGGTGA-GGAACTTATTTCT-CTTGACGCGACATATCATGTTCTTTAAAGA
261 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
49702 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
326 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
*
49767 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAATGGAATTTGA
391 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
49832 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
456 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
49897 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
521 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
49962 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
586 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
*
50027 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
651 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATAGACATGTCTTG
50092 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAATTCA
716 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAATTCA
*
50157 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGGAAGA
781 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGAAAGA
** *
50222 ATAGATGAAATAGTAAGGTTAGATAAAATATGTTCTTC
846 ATAGATGAAATAGTAAGGTTATTTAAAATATGATCTTC
50260 ATTCTCCTCT
Statistics
Matches: 2920, Mismatches: 494, Indels: 615
0.72 0.12 0.15
Matches are distributed among these distances:
894 2 0.00
895 3 0.00
896 10 0.00
897 16 0.01
898 20 0.01
899 598 0.20
900 34 0.01
901 1022 0.35
902 99 0.03
903 5 0.00
904 4 0.00
905 17 0.01
906 5 0.00
907 6 0.00
908 3 0.00
909 3 0.00
910 2 0.00
911 1 0.00
912 3 0.00
913 5 0.00
914 4 0.00
915 8 0.00
916 12 0.00
917 3 0.00
918 1 0.00
920 2 0.00
922 2 0.00
923 3 0.00
925 4 0.00
926 1 0.00
927 1 0.00
928 1 0.00
929 7 0.00
930 13 0.00
931 21 0.01
932 40 0.01
933 30 0.01
934 26 0.01
935 15 0.01
936 7 0.00
937 21 0.01
938 15 0.01
939 19 0.01
940 8 0.00
941 6 0.00
942 7 0.00
943 7 0.00
944 3 0.00
945 3 0.00
946 13 0.00
947 1 0.00
949 9 0.00
950 7 0.00
951 7 0.00
952 1 0.00
953 6 0.00
954 6 0.00
955 3 0.00
956 7 0.00
957 3 0.00
958 10 0.00
959 6 0.00
960 7 0.00
961 6 0.00
962 17 0.01
963 4 0.00
964 11 0.00
965 16 0.01
966 15 0.01
967 11 0.00
969 7 0.00
970 7 0.00
972 11 0.00
973 15 0.01
974 16 0.01
975 11 0.00
976 4 0.00
977 17 0.01
978 6 0.00
979 7 0.00
980 6 0.00
981 10 0.00
982 3 0.00
983 6 0.00
984 3 0.00
985 6 0.00
986 6 0.00
987 1 0.00
988 7 0.00
989 7 0.00
990 9 0.00
992 1 0.00
993 13 0.00
994 3 0.00
995 2 0.00
996 7 0.00
997 7 0.00
998 7 0.00
999 8 0.00
1000 19 0.01
1001 15 0.01
1002 21 0.01
1003 7 0.00
1004 15 0.01
1005 26 0.01
1006 31 0.01
1007 40 0.01
1008 21 0.01
1009 12 0.00
1010 6 0.00
1011 1 0.00
1012 1 0.00
1013 1 0.00
1014 3 0.00
1016 3 0.00
1017 2 0.00
1019 2 0.00
1020 1 0.00
1021 1 0.00
1022 4 0.00
1023 8 0.00
1024 10 0.00
1025 2 0.00
1026 4 0.00
1027 2 0.00
1028 1 0.00
1029 3 0.00
1030 1 0.00
1031 3 0.00
1032 5 0.00
1033 4 0.00
1034 18 0.01
1035 4 0.00
1037 5 0.00
1038 5 0.00
1039 13 0.00
1040 22 0.01
1041 21 0.01
1042 16 0.01
1043 9 0.00
1044 3 0.00
1045 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (902 bp):
TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATCAAGCCTTTGTTCGAATAGGCACT
TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATAGACATGTCTTG
TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAATTCA
TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGAAAGA
ATAGATGAAATAGTAAGGTTATTTAAAATATGATCTTCTTGTACGTCTTGGTTTCCT
Found at i:50164 original size:899 final size:902
Alignment explanation
Indices: 48478--50259 Score: 3444
Period size: 899 Copynumber: 2.0 Consensus size: 902
48468 AACTTACAAC
*
48478 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGTCTTCTTGTACGTCTTGGTTTCC
1 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
48543 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
66 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
48608 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
131 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
48673 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
196 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
48738 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
261 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
48803 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
326 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
48868 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
391 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
48933 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
456 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
48998 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
521 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
49063 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
586 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
49128 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
651 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
49193 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCAATAATTCA
716 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCAATAATTCA
*
49258 TGATTCTTGAATCATCTCCTCGAAAAGATACGTCTCTTGGATTATCCTACAAAACAATAGAAAGA
781 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATCCTACAAAACAATAGAAAGA
**
49323 ATAGATGAAATAGTAAGGTTATTTAAAATATG-TCTTCTTGTACGTCTTGGTTTCCT
846 ATAGATGAAATAGTAAGGTTAGATAAAATATGTTCTTCTTGTACGTCTTGGTTTCCT
49379 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
1 TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
*
49444 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTGTATTGTTTTGAATCA
66 TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
*
49509 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTGGTGTATCCTGCAAT
131 ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
49574 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
196 ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
49639 TGCAATGTTCCTGTTGGTGA-GGAACTTATTTCT-CTTGACGCGACATATCATGTTCTTTAAAGA
261 TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
49702 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
326 AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
*
49767 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAATGGAATTTGA
391 TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
49832 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
456 CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
49897 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
521 AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
49962 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
586 GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
50027 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
651 TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
*
50092 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCCATAATTCA
716 TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCAATAATTCA
* * *
50157 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATGCTGCAAAACAATAGGAAGA
781 TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATCCTACAAAACAATAGAAAGA
50222 ATAGATGAAATAGTAAGGTTAGATAAAATATGTTCTTC
846 ATAGATGAAATAGTAAGGTTAGATAAAATATGTTCTTC
50260 ATTCTCCTCT
Statistics
Matches: 869, Mismatches: 11, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
899 574 0.66
900 18 0.02
901 277 0.32
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (902 bp):
TCAAATTGCAACACTTACTATCTTCCTTCACAAGACTTGATGCCTTCTTGTACGTCTTGGTTTCC
TTTAATGAAAAGACTCTCCTTGTTCATATCTCTAAGAACATCAATAGTTATATTGTTTTGAATCA
ACACATCTCTTGGTTCAACGATTTCATCCTTTAGTAAGGTCAGGTATTTTAGTGTATCCTGCAAT
ACAATAAATAAAAATTCATCTCCAAAAAGGGCTTATTGAATAAAGCCTTTGTTCGAATAGGCACT
TGCAATGTTCCTGTTGGTGATGGAACTTATTTCTCCTTGACGCGACATATCATGTTCTTTAAAGA
AAATATGTTAACTTTTCATCTCCACTCCTTGAATCATCATGATGGTTTGTGAAGAGTCTTAACCA
TTGAAATTTCATCAAATGCCTTAGTTCTATTAACCAATGAATCTCACAATGAGAACGGAATTTGA
CATCAACGTTTGGTAGGATAATACCATATATATGAGTTGAATTCCTGTAAATTAAATAAAAGTTA
AAATATGAAATGTATAAACAAAATGAATGGAAATATCAAACTAATGTGGATGTTTAATGGGAGTT
GGCTATTGAATTCTTTTCAGGATTGGCAATGCACTTGGATGTCAACGAACAAAACTCTTGGCACT
TCAAGTGACGCCTTTATTTGGAACTTCAATGGTATAACCATTAAAACATCAATTGACATGTCTTG
TGAATCACAAAGAGTCACGCCTATTGGTTCTTCAAAGGTTACATCTTTTAGTCCTCAATAATTCA
TGATTCTTGAATCATCTCCTCGAAAAGATACATCTCTTGGATTATCCTACAAAACAATAGAAAGA
ATAGATGAAATAGTAAGGTTAGATAAAATATGTTCTTCTTGTACGTCTTGGTTTCCT
Done.