Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000671.1 Hibiscus syriacus cultivar Beakdansim tig00001305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62838
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Found at i:7455 original size:40 final size:40
Alignment explanation
Indices: 7409--7487 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
7399 TAAATTATTA
7409 AAATTATCTTT-TATTTTTTCTTCAAAATATATTCTCATTG
1 AAATTATCTTTCTA-TTTTTCTTCAAAATATATTCTCATTG
*
7449 AAATTATCTTTCTATTTTTCTTTAAAATATATTCTCATT
1 AAATTATCTTTCTATTTTTCTTCAAAATATATTCTCATT
7488 TTCTACTATC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 35 0.95
41 2 0.05
ACGTcount: A:0.30, C:0.13, G:0.01, T:0.56
Consensus pattern (40 bp):
AAATTATCTTTCTATTTTTCTTCAAAATATATTCTCATTG
Found at i:8637 original size:20 final size:20
Alignment explanation
Indices: 8598--8638 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8588 ATATATAGGG
*
8598 TAAACTATATGTTTATTATT
1 TAAACTATATGTTTAGTATT
*
8618 TAAACTATATGTTTGGTATT
1 TAAACTATATGTTTAGTATT
8638 T
1 T
8639 TTTTAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.10, T:0.54
Consensus pattern (20 bp):
TAAACTATATGTTTAGTATT
Found at i:9800 original size:31 final size:31
Alignment explanation
Indices: 9756--9835 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
9746 TTATTAAAAT
*
9756 TATAATATAATTATTAAA-TTTATTAAATTAA
1 TATAAAATAATTATTAAAGTTT-TTAAATTAA
* * *
9787 TATAAAATTATTATTAAAGTTTTTATATTAT
1 TATAAAATAATTATTAAAGTTTTTAAATTAA
* *
9818 TATAAAATAGTCATTAAA
1 TATAAAATAATTATTAAA
9836 ATTATCAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 38 0.93
32 3 0.07
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (31 bp):
TATAAAATAATTATTAAAGTTTTTAAATTAA
Found at i:14366 original size:12 final size:12
Alignment explanation
Indices: 14331--14376 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
14321 TGAAAATATT
*
14331 AATATTTTTTAA
1 AATATTATTTAA
* **
14343 CATATTCGTTAA
1 AATATTATTTAA
14355 AATATTATTTAA
1 AATATTATTTAA
14367 AATATTATTT
1 AATATTATTT
14377 TATTAGAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (12 bp):
AATATTATTTAA
Found at i:14480 original size:22 final size:23
Alignment explanation
Indices: 14413--14480 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 23
14403 ATTTCGATAG
*
14413 AAAAAATAACATTTTATGTA-AC
1 AAAAAATAACATTTTAAGTAGAC
* **
14435 ACATAATATTAACATTTTCGGTAGA-
1 A-A-AA-AATAACATTTTAAGTAGAC
14460 AAAAAATAACATTTTAAGTAG
1 AAAAAATAACATTTTAAGTAG
14481 TATTTTATCG
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
22 15 0.42
23 3 0.08
24 3 0.08
25 14 0.39
26 1 0.03
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (23 bp):
AAAAAATAACATTTTAAGTAGAC
Found at i:14506 original size:80 final size:82
Alignment explanation
Indices: 14420--14583 Score: 226
Period size: 80 Copynumber: 2.0 Consensus size: 82
14410 TAGAAAAAAT
* * *
14420 AACATTTTATGTAACACAT-AATATTAACATTTTCGGTAGAAAAAAA-TAACATTTTAAG-TAGT
1 AACATTTTAGGTAACA-ATCAATATTAACATTTCCGGTAGAAAAAAAGTAACATTTTAAGATAAT
*
14482 ATTTTATCGAAAATATTA
65 ATTTTACCGAAAATATTA
* * * *
14500 AACATTTTAGGTAACAATCAATATTAACATTTCCGGTAGAAAAAAAGTGATATTTTAGGATAATG
1 AACATTTTAGGTAACAATCAATATTAACATTTCCGGTAGAAAAAAAGTAACATTTTAAGATAATA
14565 TTTTACCGAAAATATTA
66 TTTTACCGAAAATATTA
14582 AA
1 AA
14584 AAAATTAACA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
79 2 0.03
80 41 0.56
81 9 0.12
82 21 0.29
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (82 bp):
AACATTTTAGGTAACAATCAATATTAACATTTCCGGTAGAAAAAAAGTAACATTTTAAGATAATA
TTTTACCGAAAATATTA
Found at i:16777 original size:16 final size:17
Alignment explanation
Indices: 16744--16777 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16734 CAATTCATAT
*
16744 TTTTTTCTAACATACAA
1 TTTTTTATAACATACAA
16761 TTTTTTATAACAT-CAA
1 TTTTTTATAACATACAA
16777 T
1 T
16778 ATTATATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTTTATAACATACAA
Found at i:18506 original size:20 final size:22
Alignment explanation
Indices: 18481--18520 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
18471 AGGGATTTAT
18481 AAAGAA-A-AAAAAGAGAGAGG
1 AAAGAAGATAAAAAGAGAGAGG
*
18501 AAAGAAGATATAAAGAGAGA
1 AAAGAAGATAAAAAGAGAGA
18521 TGGGAGTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.05
Consensus pattern (22 bp):
AAAGAAGATAAAAAGAGAGAGG
Found at i:20985 original size:16 final size:18
Alignment explanation
Indices: 20951--20985 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
20941 ATCTTTTAAA
20951 TATAATTAATTTATTTTG
1 TATAATTAATTTATTTTG
20969 TATAATT-ATTT-TTTTG
1 TATAATTAATTTATTTTG
20985 T
1 T
20986 TGCCCTTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 4 0.24
18 7 0.41
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (18 bp):
TATAATTAATTTATTTTG
Found at i:26237 original size:31 final size:30
Alignment explanation
Indices: 26202--26285 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 30
26192 ACTTTTGAAG
* * *
26202 ATTCTAAATTTATCCCCAAATTATGACTCT
1 ATTCTAAATTTATCCCCAAACTACGACCCT
*
26232 CATTCT-AATTTCATCCCTAAACTACGACCCT
1 -ATTCTAAATTT-ATCCCCAAACTACGACCCT
**
26263 ATTTCTAAATTGGTCCCCAAACT
1 A-TTCTAAATTTATCCCCAAACT
26286 TTTGAATATT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
30 6 0.14
31 33 0.77
32 4 0.09
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.36
Consensus pattern (30 bp):
ATTCTAAATTTATCCCCAAACTACGACCCT
Found at i:26524 original size:60 final size:59
Alignment explanation
Indices: 26428--26597 Score: 177
Period size: 60 Copynumber: 2.8 Consensus size: 59
26418 GGTACATGTG
* * *
26428 TATAGTTTGGGG-TGAAATTGGAATGTTCAAAAAGTTTGAGGACCAATTTAG-AGTGA-AGGA
1 TATAGTTTGGGGATGAAATTGAAATATT-TAAAAGTTTGAGGACCAATTTAGTA-TGATA--A
* * *
26488 TATAGTTTGGGGATGAAATTGAAATATTTAATAGTTTGAGGACTAACTTAGTATGATAA
1 TATAGTTTGGGGATGAAATTGAAATATTTAAAAGTTTGAGGACCAATTTAGTATGATAA
** *
26547 TCATAGTTTATGGATGAAATTAAAATATTTAAAAGTTT-AGAGACCAATTTA
1 T-ATAGTTTGGGGATGAAATTGAAATATTTAAAAGTTTGAG-GACCAATTTA
26598 AAAGGAAGGT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.04
60 74 0.80
61 15 0.16
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (59 bp):
TATAGTTTGGGGATGAAATTGAAATATTTAAAAGTTTGAGGACCAATTTAGTATGATAA
Found at i:27126 original size:14 final size:14
Alignment explanation
Indices: 27099--27200 Score: 60
Period size: 14 Copynumber: 6.3 Consensus size: 14
27089 AATCAATCCA
27099 TATTTTATAATAATT
1 TATTTTA-AATAATT
27114 TATTTTAAATAATT
1 TATTTTAAATAATT
* *
27128 TATTAGTATAGATTGATT
1 TATT--T-TA-AATAATT
27146 TATTTTAAAATATGGATTGATT
1 TATTTT-AAATA---A-T---T
27168 TATTTTAAAATAATT
1 TATTTT-AAATAATT
27183 TATTTTAAATAATT
1 TATTTTAAATAATT
27197 TATT
1 TATT
27201 AGTATAGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 25
0.71 0.04 0.25
Matches are distributed among these distances:
14 23 0.32
15 17 0.24
16 3 0.04
17 2 0.03
18 11 0.15
19 2 0.03
22 13 0.18
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTTTAAATAATT
Found at i:27152 original size:69 final size:68
Alignment explanation
Indices: 27051--27224 Score: 225
Period size: 69 Copynumber: 2.6 Consensus size: 68
27041 TATTTAAATA
* *
27051 ATTTTAAATAATTTA--A-TA-AGGTT-ATTTATTTTAAAATA-AATCAATCCATATTTTATAAT
1 ATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATAGAATCAAT--ATATTTTAAAAT
27110 AATTT
64 AATTT
* ** *
27115 ATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATA
1 ATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATA-GAATCAATATATTTTAAAATA
27180 ATTT
65 ATTT
27184 ATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
1 ATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
27225 AATGGATTGA
Statistics
Matches: 97, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
64 15 0.15
66 1 0.01
67 2 0.02
68 4 0.04
69 71 0.73
71 4 0.04
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (68 bp):
ATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATAGAATCAATATATTTTAAAATAA
TTT
Found at i:27163 original size:22 final size:22
Alignment explanation
Indices: 27138--27245 Score: 99
Period size: 22 Copynumber: 4.8 Consensus size: 22
27128 TATTAGTATA
27138 GATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATG
*
27160 GATTGATTTATTTTAAAATAATT
1 GATTGATTTATTTTAAAAT-ATG
* * ** * * * *
27183 TATTTTAAATAATTTATTAGTATA
1 GA-TTGATTTATTTTA-AAATATG
*
27207 GATTGATTTATTTTAAAAAATG
1 GATTGATTTATTTTAAAATATG
27229 GATTGATTTATTTTAAA
1 GATTGATTTATTTTAAA
27246 TAATTTATTA
Statistics
Matches: 65, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
22 39 0.60
23 12 0.18
24 12 0.18
25 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATG
Found at i:27174 original size:54 final size:54
Alignment explanation
Indices: 27111--27536 Score: 492
Period size: 54 Copynumber: 8.1 Consensus size: 54
27101 TTTTATAATA
27111 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
* * * *
27165 ATTTATTTTAAAATAATTTATT--T-TA-AATAATTTA--TT--AGTATAGATTG
1 ATTTATTTT-AAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
* ** * * * ** * * *
27212 ATTTATTTTAAAAAATGGATT-GATTTA-TTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAG-TATAGATTGATTTATTTTA-AAATATGGATTG
*
27266 ATTTATTTTAAATAATTTATTTGTAT-GAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAG-ATTGATTTATTTTAAAATATGGATTG
*
27320 ATTTA--TT--AT--TGTAGTT-GTATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATAGATTGATTTATTTTAAAATATGGATTG
* *
27368 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
*
27422 ATTTATTTTAAATTATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
*
27476 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
27530 ATTTATT
1 ATTTATT
27537 ATTGTAGTTG
Statistics
Matches: 318, Mismatches: 33, Indels: 42
0.81 0.08 0.11
Matches are distributed among these distances:
46 9 0.03
47 18 0.06
48 39 0.12
49 11 0.03
50 4 0.01
51 9 0.03
52 6 0.02
53 3 0.01
54 197 0.62
55 22 0.07
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
Found at i:27230 original size:69 final size:69
Alignment explanation
Indices: 27099--27254 Score: 287
Period size: 69 Copynumber: 2.3 Consensus size: 69
27089 AATCAATCCA
* *
27099 TATTTTATAATAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATT
1 TATTTTAAAATAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAAATGGATT
27164 GATT
66 GATT
27168 TATTTTAAAATAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAAATGGATT
1 TATTTTAAAATAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAAATGGATT
27233 GATT
66 GATT
27237 TATTTT-AAATAATTTATT
1 TATTTTAAAATAATTTATT
27255 AGTATGGATT
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
68 12 0.14
69 73 0.86
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (69 bp):
TATTTTAAAATAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAAATGGATT
GATT
Found at i:27264 original size:32 final size:32
Alignment explanation
Indices: 27226--27519 Score: 231
Period size: 32 Copynumber: 9.6 Consensus size: 32
27216 ATTTTAAAAA
27226 ATGGATTGATTTATTTTAAATAATTTATTAGT
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
*
27258 ATGGATTGATTTATTTTAAATAATTTATTTGT
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
* **
27290 ATGAATTGATTTATTTTAAA-ATATGGATT-G-
1 ATGGATTGATTTATTTTAAATA-ATTTATTAGT
** * * *
27320 ATTTATT-ATTGTAGTTGTATAGATTGATTTATTTTAAAAT
1 ATGGATTGATT-TA-TT-T-TA-AATAATTTA--TT--AGT
27360 ATGGATTGATTTATTTTAAATAATTTATTAGT
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
27392 ATGGATTGATTTATTTT--A-AA---A-TA-T
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
*
27416 A--GATTGATTTATTTTAAATTATTTATTAGT
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
*
27446 ATAGATTGATTTA-TTT---TAA---A--A-T
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
27468 ATGGATTGATTTATTTTAAATAATTTATTAGT
1 ATGGATTGATTTATTTTAAATAATTTATTAGT
27500 ATGGATTGATTTATTTTAAA
1 ATGGATTGATTTATTTTAAA
27520 ATATGGATTG
Statistics
Matches: 209, Mismatches: 19, Indels: 68
0.71 0.06 0.23
Matches are distributed among these distances:
22 27 0.13
23 4 0.02
24 3 0.01
25 4 0.02
26 4 0.02
28 3 0.01
29 8 0.04
30 10 0.05
31 8 0.04
32 106 0.51
33 2 0.01
34 6 0.03
36 9 0.04
37 2 0.01
38 1 0.00
39 2 0.01
40 7 0.03
41 3 0.01
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.53
Consensus pattern (32 bp):
ATGGATTGATTTATTTTAAATAATTTATTAGT
Found at i:27301 original size:18 final size:18
Alignment explanation
Indices: 27248--27305 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
27238 ATTTTAAATA
* *
27248 ATTTATTAGTATGGATTG
1 ATTTATTTGTATGAATTG
*
27266 ATTTATTT-TA--AA-TA
1 ATTTATTTGTATGAATTG
27280 ATTTATTTGTATGAATTG
1 ATTTATTTGTATGAATTG
27298 ATTTATTT
1 ATTTATTT
27306 TAAAATATGG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 9 0.28
15 3 0.09
17 4 0.12
18 16 0.50
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (18 bp):
ATTTATTTGTATGAATTG
Found at i:27314 original size:22 final size:22
Alignment explanation
Indices: 27289--27379 Score: 85
Period size: 22 Copynumber: 4.0 Consensus size: 22
27279 AATTTATTTG
27289 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
* ** *
27311 TATGGATTGATTTATTATTGTAG
1 TATGAATTGATTTATT-TTAAAA
27334 T-TGTATAGATTGATTTATTTTAAAA
1 TATG---A-ATTGATTTATTTTAAAA
*
27359 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
27380 TAATTTATTA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
22 33 0.61
23 4 0.07
25 4 0.07
26 13 0.24
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:27401 original size:188 final size:188
Alignment explanation
Indices: 27180--27819 Score: 702
Period size: 188 Copynumber: 3.4 Consensus size: 188
27170 TTTTAAAATA
*
27180 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAAATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
27245 ATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAA
66 ATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAA
** * * * *
27310 ATATGGATTGATTTATTATTGTAGT-TGTATAGATTGATTTATTTTA-AAATATGGATTG
131 ATATGGATTGATTTATT-TTAAAATATGGATAGATTGA-TTATTGTAGAAATATAGATTG
* *
27368 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
* * * * * * * *
27433 ATTATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTA--T
66 ATAATTTATTAGTATGGATTGATTTATTTT-AAATA---ATTTATTTGTATGAATTGATTTATTT
* * * ***
27496 T--AGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATAGATTG
127 TAAAATATGGATTGATTTATTTTAAAATATGGATAGATTGATTATTGTAGAAATATAGATTG
*
27556 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTTATTTA-TTT--
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
*
27618 -TAA---A--A-TATGGATTGATTTATTTTAAATAATTTATTAGTATTG-ATTGATTTATTTTAA
66 ATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTA-TGAATTGATTTATTTT-A
* * * *** *
27675 ATAATTTATTTGTATAGATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTGTATGG
129 A-AA--TA--TG----GATTGATTTATTTTAAAATATGGATAGATTGATTATTGTAGAAATATAG
27740 ATTG
185 ATTG
* *
27744 ATTTATTTTAAATAATTTATTAATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
27809 ATAATTTATTA
66 ATAATTTATTA
27820 TTGTAGTTGT
Statistics
Matches: 381, Mismatches: 41, Indels: 51
0.81 0.09 0.11
Matches are distributed among these distances:
174 14 0.04
175 1 0.00
176 2 0.01
177 5 0.01
178 17 0.04
179 1 0.00
180 1 0.00
181 1 0.00
182 2 0.01
184 4 0.01
187 14 0.04
188 287 0.75
189 8 0.02
190 2 0.01
192 20 0.05
195 1 0.00
197 1 0.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (188 bp):
ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
ATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAA
ATATGGATTGATTTATTTTAAAATATGGATAGATTGATTATTGTAGAAATATAGATTG
Found at i:27420 original size:22 final size:22
Alignment explanation
Indices: 27395--27643 Score: 84
Period size: 22 Copynumber: 9.8 Consensus size: 22
27385 TATTAGTATG
27395 GATTGATTTATTTTAAAATATA
1 GATTGATTTATTTTAAAATATA
27417 GATTGATTTATTTTAAATTATTTATTA
1 GATTGATTTATTTTAAA--A--TA-TA
* * *
27444 GTATAGATTGATTTATTTTAAAATATG
1 G-ATTGATTTA-TT---TTAAAATATA
27471 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTT-AA-AA--TA-TA
* *
27498 GTATGGATTGATTTATTTTAAAATATG
1 G-ATTGA-T---TTATTTTAAAATATA
***
27525 GATTGATTTATTATTGTAGTTGTATA
1 GATTGATTTA-T-TT-TA-AAATATA
27551 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTT-AA-AA--TA-TA
* *
27578 GTATAGATTGATTTATTTTAAAATATG
1 G-ATTGA-T---TTATTTTAAAATATA
* *
27605 GATTTATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATA
27627 GATTGATTTATTTTAAA
1 GATTGATTTATTTTAAA
27644 TAATTTATTA
Statistics
Matches: 172, Mismatches: 21, Indels: 68
0.66 0.08 0.26
Matches are distributed among these distances:
22 53 0.31
23 4 0.02
24 8 0.05
25 7 0.04
26 33 0.19
27 14 0.08
28 21 0.12
29 4 0.02
30 5 0.03
31 4 0.02
32 19 0.11
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATA
Found at i:27489 original size:210 final size:209
Alignment explanation
Indices: 27133--27675 Score: 667
Period size: 210 Copynumber: 2.6 Consensus size: 209
27123 TAATTTATTA
* *
27133 GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATAATTTATT-T-T-AAATAA
1 GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTT-AAATAATTTATTATATGGATTAA
* * ** * * * ** *
27195 TTTA--TT--AGTATAGATTGATTTATTTTAAAAAATGGATT-GATTTA-TTTTAAATAATTTAT
65 TTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAG-TATAGATTGATTTATTTTA-
* * *
27254 TAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAAATATGGATT
128 AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATT
27319 GATTTATTATTGTAGTT
193 GATTTATTATTGTAGTT
*
27336 GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
1 GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA-TATGGATTAA
*
27401 TTTATTTTAAAATATAGATTGATTTATTTTAAATTATTTATTAGTATAGATTGATTTATTTTAAA
65 TTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAA
*
27466 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
130 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGA
27531 TTTATTATTGTAGTT
195 TTTATTATTGTAGTT
** * * * ** * **
27546 GTATAGATTGATTTATTTT-AAATAATTTATT-AGTATAGATTGATTTATTTTAAAATATGGATT
1 GTATAGATTGATTTATTTTAAAAT-ATGGATTGA-TTTA-TTTTAAATAATTTATTATATGGATT
* * *
27609 TATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTA
63 AATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTA
27674 AA
128 AA
27676 TAATTTATTT
Statistics
Matches: 295, Mismatches: 32, Indels: 19
0.85 0.09 0.05
Matches are distributed among these distances:
202 12 0.04
203 41 0.14
204 1 0.00
205 1 0.00
206 7 0.02
208 2 0.01
209 5 0.02
210 206 0.70
211 20 0.07
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (209 bp):
GTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTATATGGATTAAT
TTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGAT
TTATTATTGTAGTT
Found at i:27587 original size:32 final size:32
Alignment explanation
Indices: 27546--27707 Score: 189
Period size: 32 Copynumber: 4.7 Consensus size: 32
27536 TATTGTAGTT
27546 GTATAGATTGATTTATTTTAAATAATTTATTA
1 GTATAGATTGATTTATTTTAAATAATTTATTA
27578 GTATAGATTGATTTATTTTAAAATATGGATTTATTTA
1 GTATAGATTGATTTATTTT-AAATA---ATTTA-TTA
*
27615 TTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
1 --GT---ATA--GATTGATTTATTTTAAATAATTTATTA
* *
27654 GTATTGATTGATTTATTTTAAATAATTTATTT
1 GTATAGATTGATTTATTTTAAATAATTTATTA
27686 GTATAGATTGATTTATTTTAAA
1 GTATAGATTGATTTATTTTAAA
27708 ATATAGATTG
Statistics
Matches: 113, Mismatches: 5, Indels: 24
0.80 0.04 0.17
Matches are distributed among these distances:
32 66 0.58
33 5 0.04
34 2 0.02
36 5 0.04
37 4 0.04
39 4 0.04
40 5 0.04
42 3 0.03
43 5 0.04
44 14 0.12
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (32 bp):
GTATAGATTGATTTATTTTAAATAATTTATTA
Found at i:27593 original size:18 final size:17
Alignment explanation
Indices: 27413--27594 Score: 61
Period size: 18 Copynumber: 10.9 Consensus size: 17
27403 TATTTTAAAA
27413 TATAGATTGATTTATT-
1 TATAGATTGATTTATTG
*
27429 T-TAAATT-ATTTATTAG
1 TATAGATTGATTTATT-G
*
27445 TATAGATTGATTTATTT
1 TATAGATTGATTTATTG
27462 TAAAATATGGATTGATTTATT-
1 T---ATA--GATTGATTTATTG
* *
27483 T-TA-AATAATTTATTAG
1 TATAGATTGATTTATT-G
* *
27499 TATGGATTGATTTATTT
1 TATAGATTGATTTATTG
* *
27516 TA-AAATATGGATTGATT-
1 TATAGAT-T-GATTTATTG
*
27533 TAT-TATTG---TAGTTG
1 TATAGATTGATTTA-TTG
27547 TATAGATTGATTTATT-
1 TATAGATTGATTTATTG
* *
27563 T-TA-AATAATTTATTAG
1 TATAGATTGATTTATT-G
27579 TATAGATTGATTTATT
1 TATAGATTGATTTATT
27595 TTAAAATATG
Statistics
Matches: 121, Mismatches: 19, Indels: 50
0.64 0.10 0.26
Matches are distributed among these distances:
12 1 0.01
13 2 0.02
14 28 0.23
15 12 0.10
16 8 0.07
17 20 0.17
18 34 0.28
20 3 0.02
21 1 0.01
22 12 0.10
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (17 bp):
TATAGATTGATTTATTG
Found at i:27781 original size:18 final size:19
Alignment explanation
Indices: 27758--27804 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 19
27748 ATTTTAAATA
27758 ATTTATT-AATATGGATTG
1 ATTTATTAAATATGGATTG
27776 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT-AAATATGGATTG
27798 ATTTATT
1 ATTTATT
27805 TTAAATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 5 0.20
20 4 0.16
22 16 0.64
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (19 bp):
ATTTATTAAATATGGATTG
Found at i:27790 original size:22 final size:22
Alignment explanation
Indices: 27765--27809 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
27755 ATAATTTATT
27765 AATATGGATTGATTTATTTTAA
1 AATATGGATTGATTTATTTTAA
27787 AATATGGATTGATTTATTTTAA
1 AATATGGATTGATTTATTTTAA
27809 A
1 A
27810 TAATTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (22 bp):
AATATGGATTGATTTATTTTAA
Found at i:27816 original size:54 final size:54
Alignment explanation
Indices: 27599--27819 Score: 218
Period size: 54 Copynumber: 4.0 Consensus size: 54
27589 TTTATTTTAA
*
27599 AATATGGATTTATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATT
1 AATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATT
* * * * * * *
27653 AGTATTGATTGATTTATTTT-AAATA---ATTTATTT-GTATAGATTGATTTATTTT
1 AATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTA-AATAATTTA--TT
* ***
27705 AAAATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATT
1 --AATATGGATTGATTTA-T-TT-TA-AAATATGGATTGATTTATTTTAAATAATTTATT
27765 AATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATT
1 AATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATT
27819 A
1 A
27820 TTGTAGTTGT
Statistics
Matches: 131, Mismatches: 22, Indels: 28
0.72 0.12 0.15
Matches are distributed among these distances:
49 3 0.02
50 14 0.11
52 2 0.02
53 5 0.04
54 62 0.47
55 3 0.02
56 4 0.03
57 2 0.02
58 15 0.11
59 2 0.02
60 2 0.02
62 14 0.11
63 3 0.02
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.53
Consensus pattern (54 bp):
AATATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATT
Found at i:27885 original size:31 final size:31
Alignment explanation
Indices: 27834--27892 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
27824 AGTTGTATAG
* * *
27834 ATTATTTAAATTTTAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
*
27865 ATTATTTAAATCTCATTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
27893 CTTTTAAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.44
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:39802 original size:20 final size:20
Alignment explanation
Indices: 39779--39817 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
39769 AACTGAACAC
39779 ATATAC-GAATAATTAAAAAT
1 ATATACTGAATAA-TAAAAAT
39799 ATATACTTGAATAATAAAA
1 ATATAC-TGAATAATAAAA
39818 CAAAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (20 bp):
ATATACTGAATAATAAAAAT
Found at i:39988 original size:24 final size:24
Alignment explanation
Indices: 39960--40017 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
39950 TAAATAAATG
* * *
39960 AACTAATAAATGACCTTATAAACA
1 AACTAATAAATAAACTTAAAAACA
* *
39984 TACTAGTAAATAAACTTAAAAACA
1 AACTAATAAATAAACTTAAAAACA
*
40008 AACAAATAAA
1 AACTAATAAA
40018 CGAGTTTATA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.22
Consensus pattern (24 bp):
AACTAATAAATAAACTTAAAAACA
Found at i:40039 original size:24 final size:23
Alignment explanation
Indices: 40012--40066 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
40002 AAAACAAACA
40012 AATAAACGAGTTTA-TAGATGAACT
1 AATAAACGAGTTTATTAG-TGAA-T
** *
40036 AATAAATAAGTTTATTTGTGAAT
1 AATAAACGAGTTTATTAGTGAAT
40059 AATAAACG
1 AATAAACG
40067 GATCAAAGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 7 0.28
24 16 0.64
25 2 0.08
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (23 bp):
AATAAACGAGTTTATTAGTGAAT
Found at i:41786 original size:23 final size:24
Alignment explanation
Indices: 41760--41814 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
41750 TGCATACTAA
*
41760 AATATAAACATATAA-AATTATAT
1 AATATAAACACATAATAATTATAT
** *
41783 AATATCTACACATAATATTTATAT
1 AATATAAACACATAATAATTATAT
41807 ATATATAA
1 A-ATATAA
41815 TATTATAAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 12 0.50
24 8 0.33
25 4 0.17
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATAAACACATAATAATTATAT
Found at i:45280 original size:253 final size:246
Alignment explanation
Indices: 44790--45290 Score: 715
Period size: 253 Copynumber: 2.0 Consensus size: 246
44780 TTATTTCGGG
* *
44790 TCGGGTCGGGTGAAACTTTATTTTGGTCGTGTCGGGTCGGTTTTTTTAAGTGTGATATTCAAGTA
1 TCGGATCGGGTGAAACTTTATTTT-GTCGTGTCGGGTCGGGTTTTTTAAGTGTGATATTCAAGTA
*
44855 GGGTCGAGTTCGGGTTTAGGGTGAAAAATACCCGACCCGAAAATATATAAATTTTTATATATTTA
65 GGGTCGAGTTCGGGTTTAGGGTGAAAAAGACCCGACCCGAAAATATATAAATTTTTATATATTTA
* * *
44920 GGAATAATTACAATAATACCCATCTATATATAATTTTTTTCAATTAAGTCACTGTTTTTATTGAA
130 GGAATAATTACAATAATACCCATCTATATATAATTTTTTTCAAGTAAGTCAATATTTTTATTGAA
*
44985 TAAAAATAATTTTTTTATTATTTCGGTCGGGTCGGATTTCTAATTCATATAT
195 TAAAAATAATTTTTTTATTATTTCGGTCGAGTCGGATTTCTAATTCATATAT
** *
45037 TCGGATCGGGTGAAACTTTA-TTT-T-GT-TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCG
1 TCGGATCGGGTGAAACTTTATTTTGTCGTGTCGGGTCGGGTTTTTTAAGTGTGATATTCAAGTAG
* *
45098 GGTCGGGTTCGGGTTTAGGGTGAAAAAAACCGGACCCGACCCGAAAAAAATATATAATTTTACCT
66 GGTCGAGTTCGGGTTTAGGGTG--AAAAA---GACCCGACCCG---AAAATATATAAATTT---T
*
45163 TATATATTTAGGAATAATTACAATAATACCCCTCTATATATAA-TTTTTTCAAGTAAGTCAATAT
120 TATATATTTAGGAATAATTACAATAATACCCATCTATATATAATTTTTTTCAAGTAAGTCAATAT
* *
45227 TTTTATTGAATAAAAATAATTTTTTTATTATTTCGTGTCTAGTCGGGTTTCTAATTCATATAT
185 TTTTATTGAATAAAAATAATTTTTTTATTATTTCG-GTCGAGTCGGATTTCTAATTCATATAT
45290 T
1 T
45291 GAATAAAAAT
Statistics
Matches: 227, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
242 52 0.23
243 2 0.01
244 6 0.03
246 3 0.01
247 29 0.13
250 14 0.06
252 53 0.23
253 68 0.30
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (246 bp):
TCGGATCGGGTGAAACTTTATTTTGTCGTGTCGGGTCGGGTTTTTTAAGTGTGATATTCAAGTAG
GGTCGAGTTCGGGTTTAGGGTGAAAAAGACCCGACCCGAAAATATATAAATTTTTATATATTTAG
GAATAATTACAATAATACCCATCTATATATAATTTTTTTCAAGTAAGTCAATATTTTTATTGAAT
AAAAATAATTTTTTTATTATTTCGGTCGAGTCGGATTTCTAATTCATATAT
Found at i:45893 original size:59 final size:59
Alignment explanation
Indices: 45826--45953 Score: 256
Period size: 59 Copynumber: 2.2 Consensus size: 59
45816 CATTGCATTA
45826 TGCATGCAAATGAATTGTGGCTTAATAATTGTTTATTAAATTATATTTTACTCTCAATT
1 TGCATGCAAATGAATTGTGGCTTAATAATTGTTTATTAAATTATATTTTACTCTCAATT
45885 TGCATGCAAATGAATTGTGGCTTAATAATTGTTTATTAAATTATATTTTACTCTCAATT
1 TGCATGCAAATGAATTGTGGCTTAATAATTGTTTATTAAATTATATTTTACTCTCAATT
45944 TGCATGCAAA
1 TGCATGCAAA
45954 GGATGCAAAG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 69 1.00
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (59 bp):
TGCATGCAAATGAATTGTGGCTTAATAATTGTTTATTAAATTATATTTTACTCTCAATT
Found at i:52395 original size:17 final size:17
Alignment explanation
Indices: 52375--52430 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
52365 TTGAAAATAC
52375 ATTTACTGTTGACATCA
1 ATTTACTGTTGACATCA
* *
52392 ATTTA-TTTTGAAAAT-A
1 ATTTACTGTTG-ACATCA
52408 CATTTACTGTTGACATCA
1 -ATTTACTGTTGACATCA
*
52426 TTTTA
1 ATTTA
52431 ATAACTTGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
16 5 0.17
17 20 0.67
18 5 0.17
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.46
Consensus pattern (17 bp):
ATTTACTGTTGACATCA
Found at i:52395 original size:34 final size:34
Alignment explanation
Indices: 52352--52430 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
52342 ACAAATTATA
52352 ACATCAATTTATTTTGAAAATACATTTACTGTTG
1 ACATCAATTTATTTTGAAAATACATTTACTGTTG
52386 ACATCAATTTATTTTGAAAATACATTTACTGTTG
1 ACATCAATTTATTTTGAAAATACATTTACTGTTG
*
52420 ACATCATTTTA
1 ACATCAATTTA
52431 ATAACTTGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (34 bp):
ACATCAATTTATTTTGAAAATACATTTACTGTTG
Done.