genome.fa.s6712.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006712.1 Hibiscus syriacus cultivar Beakdansim tig00016734_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170398

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3384--3439	19	2.8	20	89	5	87	42	10	10	35	1.74
10097--10136	19	2.0	20	85	4	55	22	15	0	62	1.32
15630--15669	19	2.0	20	85	4	55	22	15	0	62	1.32
16559--16591	16	1.9	18	88	11	52	72	0	15	12	1.12
16737--16777	11	3.9	11	75	12	50	2	17	2	78	0.98
16746--16783	14	2.6	15	79	8	51	2	15	5	76	1.08
21586--21683	12	8.3	11	73	21	74	31	35	3	29	1.73
21586--21697	35	3.2	36	89	3	165	33	35	3	27	1.74
21668--21736	33	2.1	33	83	5	86	30	36	1	31	1.67
22936--23251	158	2.0	158	100	0	632	29	17	17	34	1.94
23269--23361	47	2.0	47	86	0	132	21	21	29	27	1.99
26347--26421	37	2.0	37	100	0	150	33	13	21	32	1.92
28992--29046	23	2.4	23	100	0	110	29	3	36	30	1.75
33555--33609	23	2.4	23	100	0	110	29	3	36	30	1.75
38083--38150	35	1.9	36	90	3	111	29	2	35	32	1.73
43732--43817	13	7.2	12	72	22	58	29	3	37	30	1.74
43714--43818	36	2.9	36	95	1	185	28	4	36	30	1.78
49451--49536	13	7.2	12	72	22	58	29	3	37	30	1.74
49433--49537	36	2.9	36	95	1	185	28	4	36	30	1.78
50620--50680	30	2.1	29	90	3	95	27	8	21	42	1.81
56133--56176	12	3.7	11	80	14	52	0	13	6	79	0.92
56134--56167	15	2.3	15	90	5	52	0	11	5	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56136--56186	9	5.9	9	77	9	52	0	9	9	80	0.91
56954--57055	50	2.2	45	80	18	104	52	12	0	33	1.46
57034--57079	22	2.0	22	83	12	56	52	13	2	32	1.52
60611--60652	12	3.5	12	86	0	66	7	9	7	76	1.17
61390--61435	22	2.0	22	83	12	56	52	13	2	32	1.52
67476--67501	13	2.0	13	100	0	52	38	0	30	30	1.58
72255--72314	30	2.0	31	83	3	77	26	8	11	53	1.65
74607--74668	24	2.6	25	78	14	76	4	14	16	64	1.45
77981--78034	23	2.3	24	83	3	74	62	12	14	9	1.53
77991--78041	24	2.2	23	85	3	66	60	13	17	7	1.56
79284--79336	24	2.2	25	82	3	63	32	18	20	28	1.97
82078--82130	22	2.5	21	82	17	65	67	0	5	26	1.12
82075--82130	26	2.2	25	87	9	78	67	0	5	26	1.11
82539--82589	19	2.6	20	90	3	77	43	5	15	35	1.71
85593--85707	30	3.8	30	90	0	185	31	12	27	28	1.92
85591--85707	60	2.0	60	94	0	207	31	11	28	28	1.92
87972--88040	33	2.1	33	83	5	86	31	1	36	30	1.67
88026--88090	13	5.4	12	75	21	57	29	3	35	32	1.73
88011--88123	36	3.2	36	91	1	165	28	3	35	32	1.74
93701--93769	33	2.1	33	83	5	86	31	1	36	30	1.67
93740--93852	36	3.2	36	89	1	165	27	3	35	33	1.74
98682--98726	11	4.3	11	88	11	67	77	13	8	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98674--98719	20	2.3	20	92	3	76	82	10	6	0	0.83
98674--98719	19	2.4	19	92	3	74	82	10	6	0	0.83
109765--109817	21	2.7	20	88	5	72	35	13	5	45	1.67
110241--110271	15	2.1	14	94	5	53	12	16	0	70	1.16
110532--110603	34	2.2	31	85	11	92	73	4	16	5	1.18
113737--113788	21	2.6	21	88	11	74	32	11	7	48	1.68
114213--114243	15	2.1	14	94	5	53	12	16	0	70	1.16
121960--122072	36	3.2	36	89	1	165	32	35	3	28	1.74
122043--122111	33	2.1	33	83	5	86	30	36	1	31	1.67
127692--127804	36	3.2	36	87	3	149	33	33	3	29	1.75
130124--130153	13	2.4	13	94	5	53	26	30	0	43	1.55
131720--131752	16	2.1	16	100	0	66	33	18	6	42	1.75
139159--139210	19	2.6	21	90	6	81	46	5	13	34	1.67
144402--144469	35	1.9	36	93	3	120	29	2	36	30	1.72
144813--144863	19	2.6	20	87	3	68	45	5	15	33	1.71

Tables:   1

The End!