Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006713.1 Hibiscus syriacus cultivar Beakdansim tig00016753_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59811

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9960--10027
35
1.9
36
93
3
120
32
13
11
42
1.80
11031--11342
166
1.9
166
81
4
387
32
18
16
33
1.93
13148--13199
25
2.1
24
82
10
61
57
0
7
34
1.27
14386--14867
163
2.9
164
90
2
738
32
14
21
31
1.93
14869--15505
164
3.9
163
84
3
834
32
12
21
32
1.91
14873--15505
326
1.9
326
87
2
914
32
12
21
32
1.92
25848--25879
2
16.0
2
100
0
64
50
0
0
50
1.00
29064--29100
2
18.5
2
100
0
74
0
48
0
51
1.00
31188--31275
44
2.0
44
100
0
176
34
9
11
45
1.72
31196--31266
23
3.2
23
61
15
58
32
7
12
47
1.68
38318--38373
26
2.1
27
81
15
64
53
0
1
44
1.11
43830--43932
26
3.9
27
80
15
101
56
1
0
41
1.10
43887--43956
26
2.8
25
81
16
83
52
1
0
45
1.09
43829--43963
62
2.1
63
94
2
236
55
1
0
42
1.08
43950--43989
19
2.1
19
90
9
64
70
0
0
30
0.88
43829--43984
62
2.5
63
88
4
208
57
1
0
41
1.07
43993--44056
32
2.0
32
100
0
128
40
9
28
21
1.84
46793--47127
131
2.6
131
80
0
384
43
14
9
32
1.77
48494--48520
2
13.5
2
100
0
54
51
0
0
48
1.00
49062--49094
3
11.0
3
100
0
66
66
0
0
33
0.92
50242--50280
2
19.5
2
100
0
78
48
0
0
51
1.00
50864--51134
60
4.6
59
72
11
196
33
19
4
41
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50926--51134
60
3.5
60
74
9
212
32
22
5
40
1.76
50864--51124
119
2.2
120
93
4
440
33
19
4
42
1.73
51271--51421
59
2.6
59
83
7
166
49
4
13
33
1.62
52514--52541
2
14.0
2
100
0
56
50
0
0
50
1.00
59181--59210
15
2.0
15
93
0
51
63
3
6
26
1.35
59339--59429
40
2.3
40
83
11
107
43
23
14
18
1.86
59364--59429
20
3.3
20
89
4
98
42
25
15
16
1.87

Tables:   1

The End!