genome.fa.s6714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006714.1 Hibiscus syriacus cultivar Beakdansim tig00016763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138598

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4316--4389	37	2.0	37	91	0	121	43	22	8	25	1.81
6609--6862	129	2.0	128	96	0	463	33	16	14	35	1.90
13939--13985	21	2.3	21	82	14	62	17	8	27	46	1.76
16044--16140	51	1.9	51	89	0	149	48	10	4	37	1.56
27838--27879	21	2.0	21	95	0	75	30	35	19	14	1.91
33369--33440	20	3.6	20	100	0	144	50	20	19	9	1.76
33431--33533	20	5.0	21	76	15	99	34	25	20	19	1.96
33426--33528	42	2.5	42	93	0	179	36	24	20	18	1.94
33551--33720	84	2.0	84	100	0	340	30	18	18	32	1.95
33717--33868	6	25.5	6	98	1	297	33	50	16	0	1.46
34366--34471	5	20.2	5	91	3	113	0	18	41	39	1.51
34410--34443	6	5.8	6	86	6	52	0	17	35	47	1.48
34406--34503	12	8.2	12	78	15	87	0	16	41	41	1.48
34370--34501	55	2.5	55	83	12	184	0	17	42	40	1.49
34388--34513	60	2.1	60	86	2	173	2	17	39	40	1.63
34606--34804	20	9.8	20	83	12	212	18	18	26	36	1.94
34599--34810	40	5.2	40	85	4	264	17	18	24	38	1.93
34608--34866	62	4.3	61	81	8	248	16	20	24	38	1.93
34816--34866	19	2.6	20	75	15	52	11	21	25	41	1.87
37387--37429	23	1.9	22	90	4	68	9	20	27	41	1.83
60717--60797	22	3.6	22	96	1	144	24	29	27	18	1.98
60731--60793	10	5.5	13	65	27	52	26	26	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62481--62525	21	2.1	21	87	0	63	15	24	28	31	1.96
65694--65774	22	3.6	22	93	1	135	24	28	27	19	1.99
67458--67502	21	2.1	21	87	0	63	15	24	28	31	1.96
69628--69838	81	2.7	77	89	4	309	39	21	11	27	1.88
72002--72026	12	2.1	12	100	0	50	44	8	8	40	1.63
72047--72099	21	2.5	22	73	8	58	35	5	9	49	1.59
73245--73282	18	2.1	18	95	0	67	52	2	21	23	1.59
73450--73690	134	1.8	133	83	8	319	45	8	9	36	1.67
73450--73741	134	2.2	132	80	9	306	45	7	7	39	1.60
73819--73856	2	19.0	2	100	0	76	50	0	0	50	1.00
73862--73895	17	2.0	17	88	11	52	64	0	5	29	1.17
73893--73933	16	2.6	16	96	3	75	65	0	0	34	0.93
73890--73949	27	2.2	27	88	5	86	65	0	0	35	0.93
73914--73944	11	2.7	11	95	5	53	64	0	0	35	0.94
73897--73950	27	2.0	28	96	3	101	62	0	0	37	0.95
75358--75427	3	23.0	3	81	8	79	62	1	1	34	1.13
75819--76316	73	6.8	73	94	1	867	38	13	17	30	1.88
75819--76316	145	3.4	144	94	1	863	38	13	17	30	1.88
75819--76316	218	2.3	217	95	0	879	38	13	17	30	1.88
76353--76679	165	2.0	165	92	1	539	37	13	13	35	1.85
77192--77246	22	2.5	22	93	0	101	40	14	10	34	1.81
81585--81639	8	6.8	8	78	14	51	3	21	0	74	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81585--81641	17	3.5	16	83	9	71	3	21	0	75	0.95
81598--81651	26	2.2	24	83	12	65	5	20	0	74	1.02
86889--86941	18	2.8	17	81	18	61	75	0	1	22	0.90
87845--87878	17	2.0	17	88	11	52	64	0	5	29	1.17
87881--87915	16	2.3	15	95	5	61	62	0	0	37	0.95
89344--89406	3	20.0	3	83	6	72	58	1	1	38	1.17
93745--93771	14	1.9	14	100	0	54	59	0	0	40	0.98
100109--100356	133	1.9	134	90	0	399	43	12	11	32	1.79
102428--102491	14	4.6	13	74	12	56	45	1	7	45	1.42
103344--103381	18	2.1	18	100	0	76	23	21	26	28	1.99
110201--110358	55	2.9	55	90	4	248	30	25	16	27	1.97
116240--116289	20	2.6	19	78	12	57	62	12	0	26	1.30
118880--118913	2	17.0	2	100	0	68	50	0	0	50	1.00
121237--121299	22	3.0	20	79	9	54	28	23	20	26	1.99
121880--121921	21	2.0	21	95	0	75	30	23	21	23	1.99
121912--121946	7	4.9	7	89	3	52	25	25	17	31	1.97
122447--122503	21	2.8	21	70	21	57	45	1	10	42	1.49
123193--123252	29	2.0	31	83	6	79	36	6	11	45	1.67
123473--123595	59	2.1	60	81	1	140	34	24	4	37	1.74
123573--123628	29	1.9	29	88	0	85	28	21	5	44	1.74
123645--123816	59	2.9	60	81	6	181	38	5	22	33	1.76
124256--124307	21	2.5	21	81	3	61	38	19	25	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124296--124409	20	5.7	20	84	6	122	31	25	19	23	1.98
124293--124409	61	1.9	61	87	0	171	33	24	18	23	1.97
124926--124973	19	2.5	19	77	12	53	45	27	16	10	1.80
124969--125153	19	10.1	19	77	14	174	12	22	21	43	1.86
124969--125153	33	5.1	38	79	12	174	12	22	21	43	1.86
125096--125153	20	2.9	20	80	10	64	13	24	18	43	1.87
127135--127227	42	2.2	42	80	3	107	21	37	16	24	1.93
127991--128026	14	2.6	14	95	0	63	30	0	25	44	1.54
128133--128199	19	3.8	19	71	18	72	43	19	23	13	1.86
128201--128331	65	2.0	65	94	2	228	16	22	19	40	1.91
128208--128332	33	3.8	32	87	5	180	15	23	20	41	1.89
131925--131982	20	2.9	20	94	0	98	37	22	22	17	1.93
132001--132067	18	3.8	19	83	16	92	13	22	17	46	1.83
132184--132220	14	2.6	14	86	0	56	48	21	0	29	1.50
134066--134188	20	6.7	18	76	15	92	41	23	20	14	1.89
134155--134199	18	2.4	18	88	3	63	46	26	17	8	1.78
134217--134274	14	3.9	14	79	16	71	10	17	24	48	1.78
134200--134290	32	2.8	33	94	3	166	12	18	21	47	1.81
134275--134329	20	2.8	19	83	8	65	16	23	23	36	1.94
134812--134856	18	2.5	18	88	0	72	13	15	44	26	1.83

Tables:   1

The End!