Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006716.1 Hibiscus syriacus cultivar Beakdansim tig00016794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83707

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4106--4141
2
18.5
2
94
5
65
47
0
52
0
1.00
4106--4139
17
2.0
17
100
0
68
47
0
52
0
1.00
4106--4143
19
2.0
19
100
0
76
47
0
52
0
1.00
11141--11233
30
3.0
29
74
12
80
44
7
8
39
1.64
11742--11772
2
15.5
2
100
0
62
48
0
0
51
1.00
12727--12759
17
2.1
16
88
11
50
48
3
3
45
1.33
15366--15408
19
2.2
20
83
8
52
51
0
0
48
1.00
17074--17104
2
15.0
2
93
6
53
48
0
3
48
1.17
18596--18632
18
2.0
18
89
5
56
32
0
0
67
0.91
22617--22760
27
5.3
27
94
0
234
43
12
13
31
1.81
29944--29983
16
2.5
16
100
0
80
60
0
0
40
0.97
32743--32783
14
2.9
15
89
10
68
51
21
0
26
1.48
36922--37545
313
2.0
311
95
0
1122
33
22
13
30
1.93
44063--44103
20
1.9
23
85
14
61
14
31
26
26
1.95
46573--46684
24
4.7
24
83
6
138
24
17
18
39
1.92
51308--51423
24
4.8
24
81
6
128
26
13
18
41
1.88
51308--51423
48
2.4
48
85
2
144
26
13
18
41
1.88
51336--51433
24
4.1
24
80
2
83
25
12
19
42
1.86
52994--53020
2
13.5
2
100
0
54
48
0
0
51
1.00
54714--54771
2
29.0
2
96
0
107
50
0
1
48
1.11
55065--55096
2
16.0
2
100
0
64
50
0
0
50
1.00
56457--56513
28
2.0
28
100
0
114
31
21
10
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56739--56787
18
2.8
18
76
14
57
46
0
2
51
1.12
56757--56818
32
1.9
32
90
6
99
50
0
3
46
1.17
56757--56836
32
2.5
31
82
8
81
46
1
3
48
1.28
56966--57001
15
2.4
15
95
0
63
41
0
2
55
1.14
56898--56980
28
2.9
28
83
8
96
51
2
2
43
1.27
60679--60704
13
2.0
13
100
0
52
61
0
0
38
0.96
61141--61190
2
25.5
2
95
4
93
50
0
0
50
1.00
67724--67748
9
2.8
9
100
0
50
56
0
0
44
0.99
68543--68575
2
16.5
2
100
0
66
51
0
0
48
1.00
72985--73058
37
2.0
37
91
0
121
43
22
8
25
1.81
75279--75533
129
2.0
129
96
0
474
33
16
14
34
1.90

Tables:   1

The End!