Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006717.1 Hibiscus syriacus cultivar Beakdansim tig00016795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70664

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1181--1220
15
2.7
15
88
3
55
35
2
0
62
1.09
3486--3537
23
2.4
22
80
6
61
42
0
0
57
0.98
4248--4288
18
2.3
18
95
0
73
48
19
9
21
1.77
6028--6069
21
2.0
21
100
0
84
28
42
14
14
1.84
8202--8277
37
2.1
36
80
11
84
46
1
3
48
1.29
10472--10529
28
2.1
28
100
0
116
34
13
6
44
1.71
19544--19572
2
14.5
2
100
0
58
48
0
0
51
1.00
21638--21675
12
3.5
11
82
17
53
63
0
0
36
0.95
21677--21730
22
2.5
23
80
17
62
66
0
9
24
1.20
21653--21838
24
8.0
23
67
20
68
62
1
2
33
1.16
21776--21841
12
5.4
12
72
16
55
59
1
0
39
1.07
22858--22949
27
3.4
26
75
11
71
52
1
3
43
1.24
24653--24702
24
2.1
24
81
7
57
30
8
8
54
1.58
30135--30171
16
2.2
17
86
13
51
72
2
8
16
1.19
33371--33422
24
2.2
24
89
6
79
11
17
21
50
1.77
41893--41941
3
16.3
3
100
0
98
67
0
0
32
0.91
42122--42250
40
3.2
39
77
9
134
22
16
34
27
1.95
42291--42488
43
4.6
42
71
16
129
24
19
30
25
1.98
42105--42517
129
3.2
127
76
10
383
23
18
32
25
1.97
42190--42533
129
2.6
129
81
7
415
22
19
32
25
1.97
42566--42627
28
2.2
28
88
5
90
51
12
11
24
1.72
42649--42817
28
5.2
35
68
23
134
44
15
19
20
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42643--42827
64
2.9
64
95
0
325
42
15
20
21
1.89
42695--42817
36
3.7
35
74
21
136
43
14
20
21
1.88
43552--43592
20
2.0
20
85
0
55
41
17
14
26
1.88
43627--43707
30
2.8
29
87
7
112
44
14
12
28
1.82
43632--43693
30
2.1
30
96
0
115
40
14
12
32
1.84
43874--44072
106
1.9
106
89
4
312
40
11
14
33
1.82
44128--44201
37
2.0
37
84
5
96
47
13
12
27
1.78
44721--44751
15
2.1
15
94
5
55
25
32
6
35
1.82
48372--48397
5
5.2
5
100
0
52
42
19
19
19
1.90
52130--52169
3
13.3
3
100
0
80
67
0
0
32
0.91
53381--53483
53
1.9
52
88
7
154
57
6
1
33
1.36
54152--54202
2
25.5
2
100
0
102
50
0
0
49
1.00
54202--54237
2
18.0
2
100
0
72
50
0
50
0
1.00
59706--59763
6
10.3
6
73
14
52
39
29
13
17
1.88
59706--59763
11
5.2
12
70
14
52
39
29
13
17
1.88
60019--60048
13
2.3
13
94
0
51
20
3
30
46
1.66
61135--61175
14
3.1
14
76
20
52
41
0
4
53
1.22
68799--68833
16
2.2
16
89
0
52
37
0
2
60
1.12
69576--69732
81
2.0
80
96
1
287
43
8
14
33
1.76
70213--70239
13
2.1
13
100
0
54
22
25
14
37
1.93

Tables:   1

The End!