genome.fa.s6718.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006718.1 Hibiscus syriacus cultivar Beakdansim tig00016800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152405

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924--989	32	2.1	32	85	5	89	30	3	7	59	1.41
924--988	10	6.3	10	77	12	69	30	3	7	58	1.42
919--987	20	3.5	19	77	14	77	33	2	8	55	1.46
8102--8132	2	15.5	2	100	0	62	0	48	0	51	1.00
17645--17724	35	2.3	35	88	0	124	42	22	1	33	1.62
17645--17740	35	2.7	34	81	9	95	40	23	3	32	1.70
18220--18501	143	1.9	142	85	4	384	46	8	6	37	1.61
18660--18753	35	2.7	35	81	0	116	29	2	25	42	1.67
19830--19878	21	2.3	21	86	6	64	34	0	8	57	1.29
21727--21765	2	19.5	2	100	0	78	48	0	0	51	1.00
22140--22256	60	2.0	60	86	3	164	42	5	21	29	1.76
22163--22280	60	2.0	60	82	0	146	44	4	18	33	1.69
26317--27066	257	2.9	257	86	7	962	27	15	19	38	1.92
27331--27444	44	2.6	44	94	0	201	37	20	15	26	1.92
30487--30516	2	15.0	2	100	0	60	50	0	0	50	1.00
30672--30794	20	6.0	21	73	16	71	34	21	12	32	1.90
30717--30829	20	5.7	20	80	2	111	37	22	13	27	1.91
30742--30829	39	2.2	40	84	6	108	37	25	12	25	1.91
30834--30877	20	2.2	20	100	0	88	13	15	18	52	1.75
30915--30992	39	2.0	39	85	7	104	21	14	28	35	1.92
41265--41394	63	2.0	66	94	5	230	27	14	23	34	1.94
41989--42050	25	2.4	27	76	10	67	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42147--42197	28	1.9	25	84	11	66	47	13	7	31	1.72
42790--42831	20	2.1	20	86	0	57	38	19	14	28	1.90
48312--48338	2	13.5	2	100	0	54	51	48	0	0	1.00
49300--49330	16	1.9	16	93	0	53	45	3	3	48	1.34
50908--51039	48	2.8	48	82	4	149	18	18	31	31	1.95
51153--51253	48	2.1	48	84	0	130	18	15	32	32	1.93
51417--51496	39	2.1	39	82	0	97	18	18	28	33	1.95
61752--61800	2	24.5	2	100	0	98	48	0	0	51	1.00
63631--63668	20	1.9	20	88	0	58	31	18	23	26	1.97
78130--78171	14	2.9	14	85	3	57	76	0	2	21	0.90
78214--78290	37	2.1	37	85	7	104	45	3	2	48	1.34
78393--78543	36	4.1	36	80	4	151	41	6	4	47	1.50
78335--78549	36	5.9	37	74	14	139	42	6	5	46	1.52
79122--79958	165	5.1	165	93	1	1387	22	21	26	29	1.99
79122--79958	328	2.5	328	93	1	1408	22	21	26	29	1.99
86455--86496	14	2.9	14	85	3	57	76	0	2	21	0.90
86536--86612	37	2.1	37	85	7	104	45	3	2	48	1.34
86716--86866	36	4.1	36	80	4	151	41	6	5	47	1.52
86629--86868	35	6.6	36	73	10	143	41	6	5	47	1.50
86629--86872	36	6.8	37	74	14	140	40	6	5	47	1.51
91954--92005	22	2.4	22	83	0	59	15	25	25	34	1.95
92707--92773	34	2.0	33	94	2	116	50	5	0	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92719--92779	17	3.6	17	67	8	52	49	4	1	44	1.33
98633--98682	21	2.4	21	100	0	100	30	12	14	44	1.81
100067--100107	19	2.2	19	86	0	55	65	2	0	31	1.05
107233--107314	42	1.9	43	80	7	96	32	10	14	41	1.81
113066--113098	12	2.6	13	90	4	50	45	6	12	36	1.66
113135--113171	17	2.1	17	90	5	56	62	5	0	32	1.18
113566--113623	21	2.8	20	89	5	89	18	18	32	29	1.96
122184--122395	117	1.8	118	84	6	297	29	15	6	48	1.70
124786--124817	7	4.6	7	92	0	55	28	12	12	46	1.78
124833--124863	15	2.1	15	100	0	62	41	19	6	32	1.77
125131--125172	21	2.0	21	90	0	66	30	19	9	40	1.83
125170--125223	20	2.6	21	88	5	83	31	9	16	42	1.80
126633--126697	33	2.0	33	96	0	121	24	7	26	41	1.82
131311--131353	22	2.0	22	90	0	68	48	18	0	32	1.48
134814--134849	2	18.0	2	100	0	72	50	0	0	50	1.00
140028--140135	32	3.2	32	63	14	83	30	23	12	34	1.91
140029--140167	68	2.0	68	100	0	278	33	20	14	31	1.93
140193--140230	19	2.0	19	94	0	67	21	39	7	31	1.82
142011--142611	249	2.4	250	90	1	947	30	17	17	34	1.93
142511--142607	42	2.3	42	87	0	131	24	19	21	34	1.97
142781--142833	3	18.0	3	88	3	63	37	3	0	58	1.16
150330--150418	20	4.4	19	81	9	97	38	17	21	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150326--150418	40	2.3	41	86	3	134	39	17	20	22	1.92
150339--150421	20	4.1	20	85	1	112	40	16	21	20	1.91
150411--150558	57	2.6	57	85	0	188	33	24	15	27	1.95
150910--150958	20	2.5	20	96	0	89	26	14	28	30	1.95
150855--151015	77	2.1	77	94	0	277	27	14	24	34	1.94
150930--151072	57	2.5	57	96	0	259	25	15	24	34	1.95
151062--151156	20	4.7	20	81	1	118	18	16	17	46	1.85
152308--152351	20	2.2	20	83	0	52	29	13	18	38	1.89

Tables:   1

The End!